prot_C-linearis_contig8.15619.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig8.15619.1
Unique Nameprot_C-linearis_contig8.15619.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length152
Homology
BLAST of mRNA_C-linearis_contig8.15619.1 vs. uniprot
Match: A0A6H5KEX7_9PHAE (Ribosomal_S13_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KEX7_9PHAE)

HSP 1 Score: 285 bits (728), Expect = 2.150e-96
Identity = 147/151 (97.35%), Postives = 150/151 (99.34%), Query Frame = 0
Query:    1 MGRMHTAGKGISKSSLPYKRSPPSWLKISAQEVTEHVCKLAKKGLTPSQIGVILRDSNGIAQVRAITGSKILRVLKANGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLSRYYRTNRKLAANWKYESASASALVA 151
            MGRMH+ GKGISKSSLPYKRSPPSWLKISAQEVTEHVCKLAKKGLTPSQIGVILRDSNGIAQVRAITGSKILRVLKANGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRL+RYYRTNRKLAANWKYES+SASALVA
Sbjct:   38 MGRMHSGGKGISKSSLPYKRSPPSWLKISAQEVTEHVCKLAKKGLTPSQIGVILRDSNGIAQVRAITGSKILRVLKANGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLARYYRTNRKLAANWKYESSSASALVA 188          
BLAST of mRNA_C-linearis_contig8.15619.1 vs. uniprot
Match: A0A6H5KYF2_9PHAE (Ribosomal_S13_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYF2_9PHAE)

HSP 1 Score: 272 bits (695), Expect = 1.280e-91
Identity = 140/151 (92.72%), Postives = 146/151 (96.69%), Query Frame = 0
Query:    1 MGRMHTAGKGISKSSLPYKRSPPSWLKISAQEVTEHVCKLAKKGLTPSQIGVILRDSNGIAQVRAITGSKILRVLKANGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLSRYYRTNRKLAANWKYESASASALVA 151
            MGRMH+ GKGISKSSLPY+R  P WLK+SAQEVTEHVCKLAKKGLTPSQIGVILRDSNGIAQV AITG+KILRVLKANGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRL+RYYRTNRKLAANWKY+SASASALVA
Sbjct:   21 MGRMHSGGKGISKSSLPYRRRVPLWLKVSAQEVTEHVCKLAKKGLTPSQIGVILRDSNGIAQVSAITGAKILRVLKANGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLARYYRTNRKLAANWKYQSASASALVA 171          
BLAST of mRNA_C-linearis_contig8.15619.1 vs. uniprot
Match: D7FP13_ECTSI (Ribosomal_S13_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP13_ECTSI)

HSP 1 Score: 265 bits (678), Expect = 4.680e-89
Identity = 137/146 (93.84%), Postives = 143/146 (97.95%), Query Frame = 0
Query:    6 TAGKGISKSSLPYKRSPPSWLKISAQEVTEHVCKLAKKGLTPSQIGVILRDSNGIAQVRAITGSKILRVLKANGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLSRYYRTNRKLAANWKYESASASALVA 151
            + GKGISKSSLPY+RS PSWLK+SAQEVTEHVCKLAKKGLTPSQIGVILRDSNGIAQV AITG+KILRVLKANGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRL+RYYRTNRKLAANWKY+SASASALVA
Sbjct:   24 SGGKGISKSSLPYRRSAPSWLKVSAQEVTEHVCKLAKKGLTPSQIGVILRDSNGIAQVSAITGAKILRVLKANGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLARYYRTNRKLAANWKYQSASASALVA 169          
BLAST of mRNA_C-linearis_contig8.15619.1 vs. uniprot
Match: A0A7S2V1V2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1V2_9STRA)

HSP 1 Score: 259 bits (661), Expect = 9.900e-87
Identity = 128/151 (84.77%), Postives = 145/151 (96.03%), Query Frame = 0
Query:    1 MGRMHTAGKGISKSSLPYKRSPPSWLKISAQEVTEHVCKLAKKGLTPSQIGVILRDSNGIAQVRAITGSKILRVLKANGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLSRYYRTNRKLAANWKYESASASALVA 151
            MGRMH+ GKG++ S+LPYKR+PPSWLKISA++V +HVCKLAKKGL+PSQIGVILRDSNGIAQVR++TGSK+LR+LK NGLA EIPEDLYMLIKKAVAVRKHLERNR+DKDSKFRLILIESRIHRL+RYYRTNRKLA NWKYES++ASALVA
Sbjct:    1 MGRMHSRGKGMASSALPYKRTPPSWLKISAKDVEDHVCKLAKKGLSPSQIGVILRDSNGIAQVRSVTGSKVLRLLKKNGLAPEIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLARYYRTNRKLAPNWKYESSTASALVA 151          
BLAST of mRNA_C-linearis_contig8.15619.1 vs. uniprot
Match: A0A6V1RUJ0_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RUJ0_HETAK)

HSP 1 Score: 254 bits (648), Expect = 9.490e-85
Identity = 126/151 (83.44%), Postives = 142/151 (94.04%), Query Frame = 0
Query:    1 MGRMHTAGKGISKSSLPYKRSPPSWLKISAQEVTEHVCKLAKKGLTPSQIGVILRDSNGIAQVRAITGSKILRVLKANGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLSRYYRTNRKLAANWKYESASASALVA 151
            MGRMHT+GKG+SKSS PYKRSPPSWLKI+A++V  H+CKLAKKGLTPSQIGV+LRDSNGIAQV+++TGSKILR+LK NGLA EIPEDLYMLIKKAV VRKHLERNR+D D+KFRLILIESRIHRL+RYYR NRKLA+NWKYES +ASALVA
Sbjct:    1 MGRMHTSGKGMSKSSRPYKRSPPSWLKITARDVETHICKLAKKGLTPSQIGVMLRDSNGIAQVKSVTGSKILRILKKNGLAPEIPEDLYMLIKKAVQVRKHLERNRKDHDAKFRLILIESRIHRLARYYRLNRKLASNWKYESDTASALVA 151          
BLAST of mRNA_C-linearis_contig8.15619.1 vs. uniprot
Match: H3G9F0_PHYRM (Ribosomal_S13_N domain-containing protein n=30 Tax=Oomycota TaxID=4762 RepID=H3G9F0_PHYRM)

HSP 1 Score: 249 bits (637), Expect = 4.510e-83
Identity = 121/151 (80.13%), Postives = 142/151 (94.04%), Query Frame = 0
Query:    1 MGRMHTAGKGISKSSLPYKRSPPSWLKISAQEVTEHVCKLAKKGLTPSQIGVILRDSNGIAQVRAITGSKILRVLKANGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLSRYYRTNRKLAANWKYESASASALVA 151
            MGRMH+ GKG+SKS+ PYKRSPPSWLK+++++V +H+CK AKKGLTPSQIGVILRDS+GIAQV+++TGSK+LR+LK NGLA E+PEDLYMLIKKAVAVRKHLERNR+DKDSKFRLILIESRIHRL+RYYR NRKL+ NWKYESA+AS LVA
Sbjct:    1 MGRMHSHGKGMSKSARPYKRSPPSWLKVTSEDVEDHICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKVLRLLKKNGLAPELPEDLYMLIKKAVAVRKHLERNRQDKDSKFRLILIESRIHRLARYYRKNRKLSPNWKYESATASTLVA 151          
BLAST of mRNA_C-linearis_contig8.15619.1 vs. uniprot
Match: A0A6U5KTU7_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5KTU7_9STRA)

HSP 1 Score: 246 bits (629), Expect = 7.470e-82
Identity = 120/151 (79.47%), Postives = 138/151 (91.39%), Query Frame = 0
Query:    1 MGRMHTAGKGISKSSLPYKRSPPSWLKISAQEVTEHVCKLAKKGLTPSQIGVILRDSNGIAQVRAITGSKILRVLKANGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLSRYYRTNRKLAANWKYESASASALVA 151
            MGRMH  GKGISKS+LPYKRSPPSWLKI++ +V EH+CKLAKKGLTPSQIGV+LRD +GIAQVR++TGSKI+R+LK  GLA EIPEDLYMLIKKAV+VRKHLE+NR+DKDSKFRLILIESRIHRL+RYYRT RKL  NW+Y SA+AS +VA
Sbjct:    1 MGRMHAPGKGISKSALPYKRSPPSWLKITSSDVEEHICKLAKKGLTPSQIGVVLRDQHGIAQVRSVTGSKIVRILKVQGLAPEIPEDLYMLIKKAVSVRKHLEKNRKDKDSKFRLILIESRIHRLARYYRTTRKLPPNWRYASATASTMVA 151          
BLAST of mRNA_C-linearis_contig8.15619.1 vs. uniprot
Match: B7FNY4_PHATC (Predicted protein n=3 Tax=Naviculales TaxID=38748 RepID=B7FNY4_PHATC)

HSP 1 Score: 244 bits (623), Expect = 6.130e-81
Identity = 119/150 (79.33%), Postives = 137/150 (91.33%), Query Frame = 0
Query:    1 MGRMHTAGKGISKSSLPYKRSPPSWLKISAQEVTEHVCKLAKKGLTPSQIGVILRDSNGIAQVRAITGSKILRVLKANGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLSRYYRTNRKLAANWKYESASASALV 150
            MGRMH  GKGIS+ +LP+KR+PPSWLK+S+ +V + VCKLAKKGLTPSQIGVILRDSNGIAQV+ +TG K++R+LKANGLA EIPEDLYMLIKKAV VRKHLERNR+DKDSKFRLILIESRIHRL+RYYRT RKL +NWKYESA+AS +V
Sbjct:    1 MGRMHAPGKGISRRALPFKRTPPSWLKVSSADVEDQVCKLAKKGLTPSQIGVILRDSNGIAQVKFVTGQKVVRILKANGLAPEIPEDLYMLIKKAVQVRKHLERNRKDKDSKFRLILIESRIHRLARYYRTTRKLPSNWKYESATASTIV 150          
BLAST of mRNA_C-linearis_contig8.15619.1 vs. uniprot
Match: K0TMJ2_THAOC (Ribosomal_S13_N domain-containing protein n=14 Tax=Bacillariophyta TaxID=2836 RepID=K0TMJ2_THAOC)

HSP 1 Score: 242 bits (618), Expect = 3.540e-80
Identity = 122/151 (80.79%), Postives = 133/151 (88.08%), Query Frame = 0
Query:    1 MGRMHTAGKGISKSSLPYKRSPPSWLKISAQEVTEHVCKLAKKGLTPSQIGVILRDSNGIAQVRAITGSKILRVLKANGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLSRYYRTNRKLAANWKYESASASALVA 151
            MGRMH  GKGISKS+ PYKR+PP W K SA +V EHVCKLAKKGLTPSQIGVILRDS+GI QV  +TG KI+R+LKA GLA EIPEDLYMLIKKAV VRKHLERNR+DKDSKFRLILIESRIHRL+RYYRT RKL ANWKYESA+AS +VA
Sbjct:    1 MGRMHAPGKGISKSARPYKRTPPGWCKQSAADVEEHVCKLAKKGLTPSQIGVILRDSHGIPQVHTVTGQKIVRILKAKGLAPEIPEDLYMLIKKAVQVRKHLERNRQDKDSKFRLILIESRIHRLARYYRTTRKLPANWKYESATASTMVA 151          
BLAST of mRNA_C-linearis_contig8.15619.1 vs. uniprot
Match: A0A7S0SUB1_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SUB1_9STRA)

HSP 1 Score: 242 bits (617), Expect = 5.030e-80
Identity = 123/151 (81.46%), Postives = 138/151 (91.39%), Query Frame = 0
Query:    1 MGRMHTAGKGISKSSLPYKRSPPSWLKISAQEVTEHVCKLAKKGLTPSQIGVILRDSNGIAQVRAITGSKILRVLKANGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLSRYYRTNRKLAANWKYESASASALVA 151
            MGRMH+ GKGISKSSLPYKRSPPSWLKISA +V + V KLAKKGLTPSQIGVILRD +G+AQV+++TG+K +R+LK  GLA  IPEDLYMLIKKAVAVRKHLERN++DKDSKFRLILIESRIHRL+RYYRT RKL ANWKYESA+ASALVA
Sbjct:    1 MGRMHSGGKGISKSSLPYKRSPPSWLKISAAQVEDLVIKLAKKGLTPSQIGVILRDQHGVAQVKSVTGNKTVRILKKAGLAPTIPEDLYMLIKKAVAVRKHLERNKKDKDSKFRLILIESRIHRLARYYRTARKLEANWKYESATASALVA 151          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15619.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KEX7_9PHAE2.150e-9697.35Ribosomal_S13_N domain-containing protein n=2 Tax=... [more]
A0A6H5KYF2_9PHAE1.280e-9192.72Ribosomal_S13_N domain-containing protein n=1 Tax=... [more]
D7FP13_ECTSI4.680e-8993.84Ribosomal_S13_N domain-containing protein n=1 Tax=... [more]
A0A7S2V1V2_9STRA9.900e-8784.77Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6V1RUJ0_HETAK9.490e-8583.44Hypothetical protein n=3 Tax=Heterosigma akashiwo ... [more]
H3G9F0_PHYRM4.510e-8380.13Ribosomal_S13_N domain-containing protein n=30 Tax... [more]
A0A6U5KTU7_9STRA7.470e-8279.47Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
B7FNY4_PHATC6.130e-8179.33Predicted protein n=3 Tax=Naviculales TaxID=38748 ... [more]
K0TMJ2_THAOC3.540e-8080.79Ribosomal_S13_N domain-containing protein n=14 Tax... [more]
A0A7S0SUB1_9STRA5.030e-8081.46Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012606Ribosomal protein S13/S15, N-terminalSMARTSM01386Ribosomal_S13_N_2coord: 1..60
e-value: 7.3E-37
score: 138.5
IPR012606Ribosomal protein S13/S15, N-terminalPFAMPF08069Ribosomal_S13_Ncoord: 1..60
e-value: 9.1E-31
score: 105.7
IPR000589Ribosomal protein S15SMARTSM01387Ribosomal_S15_2coord: 70..149
e-value: 3.3E-11
score: 53.2
IPR000589Ribosomal protein S15PFAMPF00312Ribosomal_S15coord: 76..145
e-value: 1.3E-13
score: 50.9
IPR000589Ribosomal protein S15PROSITEPS00362RIBOSOMAL_S15coord: 98..128
NoneNo IPR availableGENE3D1.10.8.1030coord: 35..82
e-value: 2.2E-26
score: 93.3
NoneNo IPR availableGENE3D1.10.287.10coord: 83..151
e-value: 9.0E-35
score: 120.4
NoneNo IPR availablePANTHERPTHR11885:SF640S RIBOSOMAL PROTEIN S13coord: 1..151
IPR023029Ribosomal protein S15PPANTHERPTHR11885RIBOSOMAL PROTEIN S15P/S13Ecoord: 1..151
IPR023029Ribosomal protein S15PHAMAPMF_01343_ARibosomal_S15_Acoord: 3..149
score: 29.86
IPR009068S15/NS1, RNA-bindingSUPERFAMILY47060S15/NS1 RNA-binding domaincoord: 66..142

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:1939187..1940423 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15619.1mRNA_C-linearis_contig8.15619.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig8 1938718..1941323 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig8.15619.1 ID=prot_C-linearis_contig8.15619.1|Name=mRNA_C-linearis_contig8.15619.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=152bp
MGRMHTAGKGISKSSLPYKRSPPSWLKISAQEVTEHVCKLAKKGLTPSQI
GVILRDSNGIAQVRAITGSKILRVLKANGLAAEIPEDLYMLIKKAVAVRK
HLERNRRDKDSKFRLILIESRIHRLSRYYRTNRKLAANWKYESASASALV
A*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012606Ribosomal_S13/S15_N
IPR000589Ribosomal_S15
IPR023029Ribosomal_S15P
IPR009068S15_NS1_RNA-bd