prot_C-linearis_contig8.15599.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_C-linearis_contig8.15599.1
Unique Name	prot_C-linearis_contig8.15599.1
Type	polypeptide
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length	167

Homology

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BLAST of mRNA_C-linearis_contig8.15599.1 vs. uniprot
Match: D7G8H7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8H7_ECTSI)

HSP 1 Score: 223 bits (567), Expect = 5.800e-72
Identity = 120/166 (72.29%), Postives = 133/166 (80.12%), Query Frame = 0

Query:    1 MDDPLQPTCCAGMQAMGTLLGTMGGFVSAALLTPIHGREQEHGLPAAPGVVIGSSLGVLAAHSAGEGNQPLRQLANLLVLGVAAAAATTAACSWLVGEILQNGGSAGIIALATVASLGSTAAFTLLKHNTLLRRAAAVGALDDRDDHDVLPPTHAECAPLMCSKDI 166
            MDD LQPTC AGMQAMGTLLGTM GFVSAALLTPI G E+EHGLPAAPGV++GSSLGVLAA+SAGEG QPLRQL  LL+L V AAA TTAACSWL G++LQNGGS GI+ LATVASLGSTA FT+ KHN LL RAA   A DDR+ H+ LP  H +   LM  K +
Sbjct:    1 MDDLLQPTCWAGMQAMGTLLGTMFGFVSAALLTPIDGGEREHGLPAAPGVIMGSSLGVLAAYSAGEGTQPLRQLLYLLLLSVGAAAVTTAACSWLTGDVLQNGGSVGIMVLATVASLGSTAVFTIDKHNMLLTRAATAAAFDDRERHEGLP--HLQEESLMDLKAV 164

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig8.15599.1 vs. uniprot

BLAST of mRNA_C-linearis_contig8.15599.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D7G8H7_ECTSI	5.800e-72	72.29	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 97..107
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 12..32
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 127..166
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 74..96
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 44..62
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..11
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 108..126
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 63..73
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 33..43
None	No IPR available	TMHMM	TMhelix		coord: 10..32
None	No IPR available	TMHMM	TMhelix		coord: 104..126
None	No IPR available	TMHMM	TMhelix		coord: 77..99

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig8	contig	C-linearis_contig8:1741887..1744214 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig8.15599.1	mRNA_C-linearis_contig8.15599.1	Chordaria linearis ClinC8C monoicous	mRNA	C-linearis_contig8 1741604..1744792 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_C-linearis_contig8.15599.1 ID=prot_C-linearis_contig8.15599.1|Name=mRNA_C-linearis_contig8.15599.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=167bp
MDDPLQPTCCAGMQAMGTLLGTMGGFVSAALLTPIHGREQEHGLPAAPGV
VIGSSLGVLAAHSAGEGNQPLRQLANLLVLGVAAAAATTAACSWLVGEIL
QNGGSAGIIALATVASLGSTAAFTLLKHNTLLRRAAAVGALDDRDDHDVL
PPTHAECAPLMCSKDI*