prot_C-linearis_contig8.15549.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig8.15549.1
Unique Nameprot_C-linearis_contig8.15549.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length442
Homology
BLAST of mRNA_C-linearis_contig8.15549.1 vs. uniprot
Match: D8LM21_ECTSI (Stn1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM21_ECTSI)

HSP 1 Score: 555 bits (1430), Expect = 4.840e-195
Identity = 296/445 (66.52%), Postives = 331/445 (74.38%), Query Frame = 0
Query:    1 MTRGRAAGQEKVDE---VVGSPGLRYGREGDAKPAAIHEPESTTSLLRVHEWGLNPVFWSYVKLFARDIHGLGTLEGIDDSHVLYRNKAVHRVEVSGIVVHIKPGATKAFGSYVKYILDDGTGLLPCTQYERSAGSGAVHRGHSARHELGELLVVQGKLKRYKGAREVVITSASKPADPNEETLHWLRCIELGKTVYHPPFQQRNEYVDQDLVLRSSQARPTRCDCGAAYAEALGYCRCVAAPVALDPAFEFRDALLAHLAAREESLPDPDEHLRFQFARDVRDDPFLREAAVRVVASTAAGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSGVQQARVMELLRAVMSSLHRDGALHFSDKAEDVYVLVSRGRVLQPAVEEACRQRRLGLTHENEIIRVLQGSALFHHVPGARVRACVHRMKK-GXXXXXXXXXXQLPESP 441
            M R RA+ +E+ +    VV   G   GR G A   A+    S T  LRVHEWGLNP+FWSYVKL  RD+HGLGTL GIDDSHVL+ NKA+HRVEVSG+VVH+KPGATKA GSYVKYILDDGTGLLPCTQYER AG+GA HRGHS RHELGELLVVQGKLKRY+GAREV ITSASKP DPN+E LHWLRC+ELGKTVY PPFQ R++Y+D++LV  SSQARPT+C CGAAYAEA+GYCRCVAAP+ALDP FEFRDALLA LAA+EESL  PDEHLRFQFARD          A    A+ AA R                                  +QQA+ +ELLRAVMSSLHRDGALHF D+A DVYVLVSRGRVL+PAVEEACR+RRLGL+ ENEIIR LQGSAL HHVPGAR+RACV+RMKK G          Q P+SP
Sbjct:    1 MKRDRASSEEEAEAGKAVVERRG--EGRGGRATEPALDG--SNTPGLRVHEWGLNPLFWSYVKLLIRDVHGLGTLGGIDDSHVLHGNKAIHRVEVSGVVVHVKPGATKASGSYVKYILDDGTGLLPCTQYERHAGTGATHRGHSERHELGELLVVQGKLKRYRGAREVAITSASKPTDPNQEALHWLRCVELGKTVYRPPFQ-RDDYIDEELVAGSSQARPTQCGCGAAYAEAVGYCRCVAAPLALDPTFEFRDALLARLAAKEESLAGPDEHLRFQFARD--------RPAEAGAAAAAAPRGV--------------------------------MQQAKALELLRAVMSSLHRDGALHFLDRARDVYVLVSRGRVLRPAVEEACRRRRLGLSQENEIIRALQGSALLHHVPGARIRACVYRMKKAGRSAQQQQHQQQQPDSP 400          
BLAST of mRNA_C-linearis_contig8.15549.1 vs. uniprot
Match: A0A2B4SF39_STYPI (CST complex subunit STN1 n=2 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4SF39_STYPI)

HSP 1 Score: 97.8 bits (242), Expect = 6.160e-19
Identity = 58/187 (31.02%), Postives = 94/187 (50.27%), Query Frame = 0
Query:   36 EPESTTSLLRVHEWGLNPVFWSYVKLFARDIHGLGTLEGIDDSHVLYRNKAVHRVEVSGIVVHIKPGATKAFGSYVKYILDDGTGLLPCTQY---ERSAGSGAVHRGHSARHELGELLVVQGKLKRYKGAREVVITSASKPADPNEETLHWLRCIELGKTVYHPPFQQRNE--YVDQDLVLRSSQAR 217
            +PE  +S L V  WGLNP+FW+++K+F  ++  L         +    N  V RVEV+G +V I             Y +DDG+G + C ++   +  AG     RG  + ++LG+L+ VQGK+  ++  R++ +       DPN E L WL  + L  TVY  PF    E  +   + VL+ ++ +
Sbjct:    4 KPEEGSSSLPVRFWGLNPLFWTHIKMFVTEVQSLKDNSDYKGVYWYSNNFPVVRVEVTGYIVSIDVRE-----KLTTYGVDDGSGTISCCKWHSLDLKAG-----RGQES-YDLGQLVTVQGKISVFREQRQLTVDLIYPETDPNAEVLFWLEAVNLSNTVYKEPFNPSLEEFHARHNPVLKETELK 179          
BLAST of mRNA_C-linearis_contig8.15549.1 vs. uniprot
Match: A0A0H5R9L4_9EUKA (OB domain-containing protein (Fragment) n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5R9L4_9EUKA)

HSP 1 Score: 89.7 bits (221), Expect = 3.660e-16
Identity = 55/150 (36.67%), Postives = 81/150 (54.00%), Query Frame = 0
Query:   49 WGLNPVFWSYVKLFARDIHGLGTLEGID-DSHVLYRNKAVHRVEVSGIVVHIKPGATKAFGSYVKYILDDGTGLLPCTQYERSAGSGAVHRGHSARHELGELLVVQGKLKRYKGAREVVITSASKPADPNEETLHWLRCIELGKTVYHPP 197
            WGL  ++WSY++LF  DI  LG        S+ LYR+  +HRV + G+VV ++  AT      V  ++DDGTG++  T++          R  S   ELG+L+ + GKL  ++  R+V I S S   DPN E LH  + I+L   +Y  P
Sbjct:   26 WGLESLYWSYIRLFIGDISRLGEFPAHPGQSYALYRHP-IHRVCILGVVVDLRLHATN-----VNVMVDDGTGIILATRWFND-------RPSSTELELGKLVQIYGKLSTFREERQVQILSWSVVVDPNVELLHCAQVIDLHDNLYRLP 162          
BLAST of mRNA_C-linearis_contig8.15549.1 vs. uniprot
Match: UPI001068F5E4 (CST complex subunit STN1-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI001068F5E4)

HSP 1 Score: 88.2 bits (217), Expect = 1.460e-15
Identity = 52/157 (33.12%), Postives = 82/157 (52.23%), Query Frame = 0
Query:   44 LRVHEWGLNPVFWSYVKLFARDIHGLGTLEGIDDSHVLYRNKAVHRVEVSGIVVHIKPGATKAFGSYVKYILDDGTGLLPCTQY-ERSAGSGAVHRGHSARHELGELLVVQGKLKRYKGAREVVITSASKPADPNEETLHWLRCIELGKTVYHPPFQ 199
            L V  WGL+P++W++VKLFARD+  L    G    + +  +  VH + V  IV   K      +G      +DDGTG LPC  + ++S G  A         + G+L+ V G++  ++  R++ ++  +   D N E LHWL  ++L K VY  PF+
Sbjct:    5 LPVKFWGLDPLYWTHVKLFARDVLKLKEYPGFTGVYAISNHPIVHALVVGYIVKVDKREKLTNYG------VDDGTGFLPCCMWHDQSNGIEA---------DFGDLVTVMGRISTFREERQITLSKLNIETDSNVEVLHWLEVMKL-KEVYQKPFK 145          
BLAST of mRNA_C-linearis_contig8.15549.1 vs. uniprot
Match: L8GR52_ACACA (OBfold nucleic acid binding domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GR52_ACACA)

HSP 1 Score: 84.3 bits (207), Expect = 3.070e-15
Identity = 53/153 (34.64%), Postives = 72/153 (47.06%), Query Frame = 0
Query:   46 VHEWGLNPVFWSYVKLFARDIHGLGTLEGIDDSHVLYRN-KAVHRVEVSGIVVHIKPGATKAFGSYVKYILDDGTGLLPCTQYERSAGSGAVHRGHSARHELGELLVVQGKLKRYKGAREVVITSASKPADPNEETLHWLRCIELGKTVYHPP 197
            V  WGL+P+FW++VKLF  D      L   D +     N   V RV V GI+V   P        ++   +DDGTG + C  Y  S   G V        ++G L  +QGKL  ++  R + I       DPN ET H L  + LG+T+Y  P
Sbjct:   47 VEHWGLDPLFWTHVKLFIGDALTNLPLSEPDATEPFNLNGHPVTRVAVMGIIVEALPRPR-----HLALSVDDGTGRIQCAYYANSVDEGGVPYSDL---QVGCLASIQGKLHHFRQQRSIAIYRIGIEEDPNAETQHMLDVVRLGETIYQRP 191          
BLAST of mRNA_C-linearis_contig8.15549.1 vs. uniprot
Match: A0A7I8IHQ6_SPIIN (Hypothetical protein n=3 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8IHQ6_SPIIN)

HSP 1 Score: 82.4 bits (202), Expect = 8.780e-15
Identity = 50/164 (30.49%), Postives = 82/164 (50.00%), Query Frame = 0
Query:   51 LNPVFWSYVKLFARDIHGLGTLEGIDDSHVLYRNKAVHRVEVSGIVVHIKPGATKAFGSYVKYILDDGTGLLPCTQY-------ERSAGSGAVHR----------GHSARHELGELLVVQGKLKRYKGAREVVITSASKPADPNEETLHWLRCIELGKTVYHPP 197
            + P   ++VKL AR++ GL    G   S  +   +AV R E  G+VV     A +     ++++LDDGTG +PC  +        R  G+ A  R          GH++R ++G L+ V+G+L  ++G  ++ +       DPN E LHWL+C+ L +  +  P
Sbjct:    1 MGPTEDAHVKLLARELLGLA---GRSASFCMAGGRAVSRAEAVGVVV-----AWERREKLIRFLLDDGTGCIPCVLWLNHRLLAGRPPGATAAPRQSLATWRAAPGHASRAQMGALVRVRGRLTAFRGTLQLTVGGVVAERDPNAEALHWLQCLRLARRCHGRP 156          
BLAST of mRNA_C-linearis_contig8.15549.1 vs. uniprot
Match: UPI001F0352F5 (CST complex subunit STN1-like isoform X1 n=3 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F0352F5)

HSP 1 Score: 83.6 bits (205), Expect = 1.170e-14
Identity = 50/158 (31.65%), Postives = 79/158 (50.00%), Query Frame = 0
Query:   42 SLLRVHEWGLNPVFWSYVKLFARDIHGLGTLEGIDDSHVLYRNKAVHRVEVSGIVVHIKPGATKAFGSYVKYILDDGTGLLPCTQYERSAGSGAVHRGHSARHELGELLVVQGKLKRYKGAREVVITSASKPADPNEETLHWLRCIELGKTVYHPPFQ 199
            +++ V  WG +P++WS+VKLF RD+  L    G D  + +  N  V +V + G VV +           + + +DDGTGL+ C  +                  LG+L+ V GK+  Y  AR+++I+S     D N E LHWL  + + + +Y  PFQ
Sbjct:    3 NVVPVKFWGSDPLYWSHVKLFVRDVLCLREYPGFDSVYAI-SNHPVVQVLIVGYVVKVHKKE-----KLITFEVDDGTGLISCCYWYNE-------HVDMVDANLGDLVTVMGKISNYHNARQIIISSFYIETDHNVEVLHWLDVMNI-REIYLKPFQ 146          
BLAST of mRNA_C-linearis_contig8.15549.1 vs. uniprot
Match: A0A6S7J3X3_PARCT (CST complex subunit STN1 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7J3X3_PARCT)

HSP 1 Score: 80.5 bits (197), Expect = 5.630e-13
Identity = 48/161 (29.81%), Postives = 78/161 (48.45%), Query Frame = 0
Query:   44 LRVHEWGLNPVFWSYVKLFARDIHGLGTLEGIDDSHVLYRNKAVHRVEVSGIVVHIKPGATKAFGSYVKYILDDGTGLLPCTQYERSAGSGAVHRGHSARHEL-----GELLVVQGKLKRYKGAREVVITSASKPADPNEETLHWLRCIELGKTVYHPPFQ 199
            L V  WGL+P++W++VKLF RD+  L    G    + +  N  + +V V G +V +             Y +DDGTG L C  +            H+  ++L     G+L+ V GK+  ++  R++  +S     DPN E  HWL  ++L + +Y  PF+
Sbjct:    5 LPVKSWGLDPLYWTHVKLFVRDVLQLKNYSGFKGVYAI-SNHPIAQVLVVGYIVKVDKRE-----KLTTYGVDDGTGCLSCCMW------------HNQNNDLVEATFGDLVTVMGKISVFREERQITASSFYIETDPNVEVFHWLEVMKL-REIYEKPFE 146          
BLAST of mRNA_C-linearis_contig8.15549.1 vs. uniprot
Match: UPI001CC48546 (CST complex subunit STN1 n=1 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC48546)

HSP 1 Score: 75.1 bits (183), Expect = 2.480e-12
Identity = 48/163 (29.45%), Postives = 76/163 (46.63%), Query Frame = 0
Query:   51 LNPVFWSYVKLFARDIHGLGTLEGIDDSH----VLYRN-KAVHRVEVSGIVVHIKPGATKAFGSYVKYILDDGTGLLPCTQYERSAGSGAVHRG--------------HSARHELGELLVVQGKLKRYKGAREVVITSASKPADPNEETLHWLRCIELGKTVY 194
            ++P+  +YVKL A D   L     +  S       YR  + V R E  G+VV     + +  G ++K+++DDGTG +PC  +     S    R               H++  +LG L  V+G++  Y+G  ++ ++      DPN E LHWL CI+L    Y
Sbjct:    1 MDPMQSTYVKLLAFDFLSLSVKSSLSSSSSDPICFYRKGRPVSRTETLGVVV-----SRELKGKFLKFLIDDGTGCVPCILWLNHHDSPYFSRHNPSDVQILAKMAAQHASDAQLGVLARVRGRITAYRGNLQITVSDVLIERDPNAEILHWLDCIKLASKCY 158          
BLAST of mRNA_C-linearis_contig8.15549.1 vs. uniprot
Match: A0A1X2ITM2_9FUNG (Uncharacterized protein n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2ITM2_9FUNG)

HSP 1 Score: 75.5 bits (184), Expect = 2.610e-11
Identity = 44/164 (26.83%), Postives = 79/164 (48.17%), Query Frame = 0
Query:   49 WGLNPVFWSYVKLFARDIHGLGTLEGIDDSHVLYRNKAVHRVEVSGIVVHIKPGATKAFGSYVKYILDDGTGLLPCTQYERSAGSGAVHRGHSARHELGELLVVQGKLKRYKGAREVVITSASKPADPNEETLHWLRCIELGKTVYHPPFQQRNEYVDQDLVLR 212
            WGL+P+FW+ VKLF +DI  L  +    D    + +  +   ++ G++V     A +   S + Y +DDG+G+LPC +++ +     +         +G+ + + G++  Y G R+V I   +   DPN E L  L  + L +  Y  PF+        +  L+
Sbjct:    6 WGLDPLFWTNVKLFIKDILNLTEVPDYKDIFTFFDHH-IRYTQLCGVIV-----AVEQTSSMMIYTVDDGSGVLPCVRWKDNIKKREMVN-------MGDCVRITGRIATYNGTRQVKIFDLAVLTDPNWELLFNLEIMALRRDHYSKPFRVPTRITQHEEELK 156          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15549.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
D8LM21_ECTSI4.840e-19566.52Stn1 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A2B4SF39_STYPI6.160e-1931.02CST complex subunit STN1 n=2 Tax=Stylophora pistil... [more]
A0A0H5R9L4_9EUKA3.660e-1636.67OB domain-containing protein (Fragment) n=1 Tax=Sp... [more]
UPI001068F5E41.460e-1533.12CST complex subunit STN1-like n=1 Tax=Dendronephth... [more]
L8GR52_ACACA3.070e-1534.64OBfold nucleic acid binding domain containing prot... [more]
A0A7I8IHQ6_SPIIN8.780e-1530.49Hypothetical protein n=3 Tax=Spirodela intermedia ... [more]
UPI001F0352F51.170e-1431.65CST complex subunit STN1-like isoform X1 n=3 Tax=X... [more]
A0A6S7J3X3_PARCT5.630e-1329.81CST complex subunit STN1 n=1 Tax=Paramuricea clava... [more]
UPI001CC485462.480e-1229.45CST complex subunit STN1 n=1 Tax=Telopea speciosis... [more]
A0A1X2ITM2_9FUNG2.610e-1126.83Uncharacterized protein n=1 Tax=Absidia repens Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018856CST complex subunit Stn1, N-terminalPFAMPF10451Stn1coord: 79..196
e-value: 3.1E-6
score: 26.4
NoneNo IPR availableGENE3D2.40.50.140coord: 51..200
e-value: 2.0E-22
score: 81.4
NoneNo IPR availablePANTHERPTHR13989:SF33CST COMPLEX SUBUNIT STN1coord: 53..197
IPR040260Replication factor A protein-likePANTHERPTHR13989REPLICATION PROTEIN A-RELATEDcoord: 53..197
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 76..187

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:1249820..1253209 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15549.1mRNA_C-linearis_contig8.15549.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig8 1249820..1253238 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig8.15549.1 ID=prot_C-linearis_contig8.15549.1|Name=mRNA_C-linearis_contig8.15549.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=442bp
MTRGRAAGQEKVDEVVGSPGLRYGREGDAKPAAIHEPESTTSLLRVHEWG
LNPVFWSYVKLFARDIHGLGTLEGIDDSHVLYRNKAVHRVEVSGIVVHIK
PGATKAFGSYVKYILDDGTGLLPCTQYERSAGSGAVHRGHSARHELGELL
VVQGKLKRYKGAREVVITSASKPADPNEETLHWLRCIELGKTVYHPPFQQ
RNEYVDQDLVLRSSQARPTRCDCGAAYAEALGYCRCVAAPVALDPAFEFR
DALLAHLAAREESLPDPDEHLRFQFARDVRDDPFLREAAVRVVASTAAGR
SGGSGCTGQPSKPADAAAAAAAAAAAAAVGATSGVQQARVMELLRAVMSS
LHRDGALHFSDKAEDVYVLVSRGRVLQPAVEEACRQRRLGLTHENEIIRV
LQGSALFHHVPGARVRACVHRMKKGGSAQQQQQQQQLPESP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018856Stn1_N
IPR040260RFA2-like
IPR012340NA-bd_OB-fold