prot_C-linearis_contig8.15509.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig8.15509.1
Unique Nameprot_C-linearis_contig8.15509.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length164
Homology
BLAST of mRNA_C-linearis_contig8.15509.1 vs. uniprot
Match: A0A6H5KPP3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPP3_9PHAE)

HSP 1 Score: 172 bits (437), Expect = 8.050e-47
Identity = 88/148 (59.46%), Postives = 109/148 (73.65%), Query Frame = 0
Query:   18 AGFVSQQQTAGSHGGVASAVGGLCEHATIAFRHMALRLLKKTKVVGVGIESGNYAAVKEAVATARSGGHLGDDEHNDVMAMVEGAERRGVWPVVETESNQYVVLDTRTRTSEHDWACVKFNQ---GGGARRMTPGRSFMCRVSLQNDA 162
            AGFVSQQ+T GSHGGVASAVGGLC+HA +A  HMA + +K+   V  G+ S +YAA KE V  A+ G HL  +E NDVM++VEGAER GVWPVVE E +QY+VLD R+RT+E DW  VKF+Q   G  +RRM+  R FMC+V L +DA
Sbjct:   96 AGFVSQQRTVGSHGGVASAVGGLCQHAALALEHMAAKTMKRATSVLGGVASTDYAAAKELVTAAKLGSHLTAEECNDVMSIVEGAERSGVWPVVEVERHQYMVLDMRSRTTELDWGSVKFDQVSEGEASRRMSSSRHFMCKVFLDSDA 243          
BLAST of mRNA_C-linearis_contig8.15509.1 vs. uniprot
Match: D7FR12_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR12_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 1.170e-45
Identity = 87/149 (58.39%), Postives = 106/149 (71.14%), Query Frame = 0
Query:   17 RAGFVSQQQTAGSHGGVASAVGGLCEHATIAFRHMALRLLKKTKVV-GVGIESGNYAAVKEAVATARSGGHLGDDEHNDVMAMVEGAERRGVWPVVETESNQYVVLDTRTRTSEHDWACVKFNQ---GGGARRMTPGRSFMCRVSLQND 161
            RAG V+QQQTAGSHGGVASA+GGLC+HA  A  HM  + +K  + V G G +   + A KE VATA+S GHL   EH  +M MVE AE  GVWPV ETE N +VV D RTRTSEHD+ACVK++    G  +RR+TP ++FMCRVSL+ D
Sbjct:  110 RAGLVAQQQTAGSHGGVASAIGGLCKHAKAALEHMRKKTVKDAREVKGDGWD---WDAAKEHVATAKSDGHLSVVEHTVIMTMVERAEGSGVWPVYETEPNHFVVRDDRTRTSEHDYACVKYDTVEPGKSSRRLTPPKNFMCRVSLRID 255          
BLAST of mRNA_C-linearis_contig8.15509.1 vs. uniprot
Match: D8LSV9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSV9_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 7.280e-43
Identity = 83/143 (58.04%), Postives = 101/143 (70.63%), Query Frame = 0
Query:   17 RAGFVSQQQTAGSHGGVASAVGGLCEHATIAFRHMALRLLKKTKVV-GVGIESGNYAAVKEAVATARSGGHLGDDEHNDVMAMVEGAERRGVWPVVETESNQYVVLDTRTRTSEHDWACVKFNQ---GGGARRMTPGRSFMCR 155
            RAG V+QQQTAGSHGGVASA+GGLC+HA  A  HM  + +K  + V G G +   + A KE VATA+S GHL   EH  +M MVE AE  GVWPV ETE N +VV D RTRTSEHD+ACVK++    G  +RR+TP ++FMCR
Sbjct:  146 RAGLVAQQQTAGSHGGVASAIGGLCKHAKAALEHMRKKTVKDAREVKGDGWD---WDAAKEHVATAKSDGHLSVVEHTAIMTMVERAEGSGVWPVYETEPNHFVVRDDRTRTSEHDYACVKYDTVEPGKSSRRLTPPKNFMCR 285          
BLAST of mRNA_C-linearis_contig8.15509.1 vs. uniprot
Match: D7G2H3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2H3_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 1.140e-29
Identity = 60/109 (55.05%), Postives = 75/109 (68.81%), Query Frame = 0
Query:   51 MALRLLKKTKVVGVGIESGNYAAVKEAVATARSGGHLGDDEHNDVMAMVEGAERRGVWPVVETESNQYVVLDTRTRTSEHDWACVKFNQ---GGGARRMTPGRSFMCRV 156
            MA   +K+   V  G+ S +YAA KE V  A+ G HL  +E NDVM++VEGAER GVWPVVETE +QY+VLD R+RT+E DW  VKF+Q   G  +RRMT  R FMC+ 
Sbjct:    1 MAANTMKRATSVLGGVSSRDYAAAKELVTAAKLGSHLTAEECNDVMSIVEGAERSGVWPVVETERHQYMVLDMRSRTTELDWGSVKFDQVSEGEASRRMTSSRHFMCKA 109          
BLAST of mRNA_C-linearis_contig8.15509.1 vs. uniprot
Match: D7FR86_ECTSI (Autophagy protein 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR86_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 1.710e-19
Identity = 45/70 (64.29%), Postives = 55/70 (78.57%), Query Frame = 0
Query:   96 MAMVEGAERRGVWPVVETESNQYVVLDTRTRTSEHDWACVKFNQ---GGGARRMTPGRSFMCRVSLQNDA 162
            M++VEGAER GVWPVVETE +QY+VLD R+RT+E DW  VKF+Q   G G+RRMT  R FMC+V L +DA
Sbjct:    1 MSIVEGAERSGVWPVVETERHQYMVLDMRSRTTELDWGSVKFDQVSEGEGSRRMTSSRHFMCKVFLDSDA 70          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15509.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KPP3_9PHAE8.050e-4759.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FR12_ECTSI1.170e-4558.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LSV9_ECTSI7.280e-4358.04Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7G2H3_ECTSI1.140e-2955.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FR86_ECTSI1.710e-1964.29Autophagy protein 5 n=1 Tax=Ectocarpus siliculosus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..14
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 15..163
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..10
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 11..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:891638..892129 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15509.1mRNA_C-linearis_contig8.15509.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig8 890030..892441 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig8.15509.1 ID=prot_C-linearis_contig8.15509.1|Name=mRNA_C-linearis_contig8.15509.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=164bp
MKFVLLFCMFRSYRRRRAGFVSQQQTAGSHGGVASAVGGLCEHATIAFRH
MALRLLKKTKVVGVGIESGNYAAVKEAVATARSGGHLGDDEHNDVMAMVE
GAERRGVWPVVETESNQYVVLDTRTRTSEHDWACVKFNQGGGARRMTPGR
SFMCRVSLQNDAL*
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