prot_C-linearis_contig8.15488.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig8.15488.1
Unique Nameprot_C-linearis_contig8.15488.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length155
Homology
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BLAST of mRNA_C-linearis_contig8.15488.1 vs. uniprot
Match: A0A6H5KN98_9PHAE (PAS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN98_9PHAE)

HSP 1 Score: 182 bits (463), Expect = 2.650e-56
Identity = 89/146 (60.96%), Postives = 115/146 (78.77%), Query Frame = 0 
Query:    8 NKNYCRESRLRKHQTELLLREEVEVLTLYEMLVEQGPELFSCHRVEPEAPFSFVCESFYHRLQVTPDDLVGKPLASIVDPRDGLILTTALSQVLANRKETGGDDHAEPEGGTLVNLRISVRGITCGASMTMALGEQGLIVVTRLYG 153
            N+ +CRE+R RK + E LL+EEVE+L+LY+ LVE+GP+LFSCHRVEP+APFSF CE+++H+LQ+ P+D VGKPLASIVDP D  IL  AL++VLAN+   G    +EP  G LV LR+S   I+C ASM+M +G QGL+VVTRLYG
Sbjct:   24 NRIHCRETRERKRRAEALLKEEVEILSLYKALVEEGPDLFSCHRVEPDAPFSFACENYFHQLQLAPEDAVGKPLASIVDPEDAPILAEALNEVLANKTNIGD---SEPGSGKLVKLRVSCGSISCSASMSMVIGSQGLVVVTRLYG 166
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BLAST of mRNA_C-linearis_contig8.15488.1 vs. uniprot
Match: A0A6H5KRF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRF4_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.870e-28
Identity = 65/152 (42.76%), Postives = 94/152 (61.84%), Query Frame = 0 
Query:    2 EGSAQRNKNYCRESRLRKHQTELLLREEVEVLTLYEMLVEQGPELFSCHRVEPEAPFSFVCESFYHRLQVTPDDLVGKPLASIVDPRDGLILTTALSQVLANRKETGGDDHAEPEGG-TLVNLRISVRGITCGASMTMALGEQGLIVVTRLY 152
            E S + N+ +C+E+R R+ + E  L E VE+L L + +VE GP+LFS H    +APFS++C++F  RLQ+ P+ +VG+ L SIVD R+ L L  A+ QVL   +               +V++RI+   I C ASM++A G  GLIVVTRLY
Sbjct:   23 ERSREANRIHCKETRDRRRERERALSEHVELLKLCQSIVEHGPDLFSLHNATIDAPFSYLCDNFTMRLQMPPEAMVGRSLLSIVDEREALSLRNAIFQVLNEAQHXXXXXXXXXXXXXAVVHVRIAHGQIFCEASMSIACGSHGLIVVTRLY 174
[Close]
BLAST of mRNA_C-linearis_contig8.15488.1 vs. uniprot
Match: D8LCA0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCA0_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 5.440e-21
Identity = 58/153 (37.91%), Postives = 81/153 (52.94%), Query Frame = 0 
Query:   28 EEVEVLTLYEMLVEQGPELFSCHRVEPEAPFSFVCESFYHRLQVTPDDLVGKPLASIVDPRDGLILTTALSQVLANRKETGGDDHAEPEGG-----------------------------TLVNLRISVRGITCGASMTMALGEQGLIVVTRL 151
            +E +VL +Y  +VE GP+LFS H    +APFSFV +S   + Q+  + L+GKPL ++VDP D  +LTTAL  VL     +GG      +GG                             T+V L +   G +C ASM++ALG +GLIVVTR+
Sbjct:    8 QEEDVLEVYRDIVENGPDLFSLHGTTLDAPFSFVSKSLNLKFQLPSEYLLGKPLKTVVDPDDWGVLTTALLAVLGPNPTSGGKSGNSRDGGXXXXXXXXXXXXXXXXXXXXXXXVAVGSGTVVELNVMCGGASCLASMSIALGCRGLIVVTRM 160
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15488.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KN98_9PHAE2.650e-5660.96PAS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KRF4_9PHAE1.870e-2842.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCA0_ECTSI5.440e-2137.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR035965PAS domain superfamilySUPERFAMILY55785PYP-like sensor domain (PAS domain)coord: 29..130

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:705412..708270 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15488.1mRNA_C-linearis_contig8.15488.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig8 705412..708282 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig8.15488.1 ID=prot_C-linearis_contig8.15488.1|Name=mRNA_C-linearis_contig8.15488.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=155bp
MEGSAQRNKNYCRESRLRKHQTELLLREEVEVLTLYEMLVEQGPELFSCH
RVEPEAPFSFVCESFYHRLQVTPDDLVGKPLASIVDPRDGLILTTALSQV
LANRKETGGDDHAEPEGGTLVNLRISVRGITCGASMTMALGEQGLIVVTR
LYGI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR035965PAS-like_dom_sf