mRNA_C-linearis_contig8.15488.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15488.1
Unique NamemRNA_C-linearis_contig8.15488.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig8.15488.1 vs. uniprot
Match: A0A6H5KN98_9PHAE (PAS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN98_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 2.180e-56
Identity = 93/158 (58.86%), Postives = 120/158 (75.95%), Query Frame = 1 
Query:    1 GAKSMEGSAQ-RNKNYCRESRLRKHQTELLLREEVEVLTLYEMLVEQGPELFSCHRVEPEAPFSFVCESFYHRLQVTPDDLVGKPLASIVDPRDGLILTTALSQVLANRKETGGDDHAEPEGGTLVNLRISVRGITCGASMTMALGEQGLIVVTRLYG 471
            GA  ME   +  N+ +CRE+R RK + E LL+EEVE+L+LY+ LVE+GP+LFSCHRVEP+APFSF CE+++H+LQ+ P+D VGKPLASIVDP D  IL  AL++VLAN+   G    +EP  G LV LR+S   I+C ASM+M +G QGL+VVTRLYG
Sbjct:   12 GATDMEQKRRIANRIHCRETRERKRRAEALLKEEVEILSLYKALVEEGPDLFSCHRVEPDAPFSFACENYFHQLQLAPEDAVGKPLASIVDPEDAPILAEALNEVLANKTNIGD---SEPGSGKLVKLRVSCGSISCSASMSMVIGSQGLVVVTRLYG 166
[Close]
BLAST of mRNA_C-linearis_contig8.15488.1 vs. uniprot
Match: A0A6H5KRF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRF4_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 2.690e-29
Identity = 67/155 (43.23%), Postives = 96/155 (61.94%), Query Frame = 1 
Query:    7 KSMEGSAQRNKNYCRESRLRKHQTELLLREEVEVLTLYEMLVEQGPELFSCHRVEPEAPFSFVCESFYHRLQVTPDDLVGKPLASIVDPRDGLILTTALSQVLANRKETGGDDHAEPEGG-TLVNLRISVRGITCGASMTMALGEQGLIVVTRLY 468
            KS E S + N+ +C+E+R R+ + E  L E VE+L L + +VE GP+LFS H    +APFS++C++F  RLQ+ P+ +VG+ L SIVD R+ L L  A+ QVL   +               +V++RI+   I C ASM++A G  GLIVVTRLY
Sbjct:   20 KSDERSREANRIHCKETRDRRRERERALSEHVELLKLCQSIVEHGPDLFSLHNATIDAPFSYLCDNFTMRLQMPPEAMVGRSLLSIVDEREALSLRNAIFQVLNEAQHXXXXXXXXXXXXXAVVHVRIAHGQIFCEASMSIACGSHGLIVVTRLY 174
[Close]
BLAST of mRNA_C-linearis_contig8.15488.1 vs. uniprot
Match: D8LCA0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCA0_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 6.180e-21
Identity = 58/153 (37.91%), Postives = 81/153 (52.94%), Query Frame = 1 
Query:   94 EEVEVLTLYEMLVEQGPELFSCHRVEPEAPFSFVCESFYHRLQVTPDDLVGKPLASIVDPRDGLILTTALSQVLANRKETGGDDHAEPEGG-----------------------------TLVNLRISVRGITCGASMTMALGEQGLIVVTRL 465
            +E +VL +Y  +VE GP+LFS H    +APFSFV +S   + Q+  + L+GKPL ++VDP D  +LTTAL  VL     +GG      +GG                             T+V L +   G +C ASM++ALG +GLIVVTR+
Sbjct:    8 QEEDVLEVYRDIVENGPDLFSLHGTTLDAPFSFVSKSLNLKFQLPSEYLLGKPLKTVVDPDDWGVLTTALLAVLGPNPTSGGKSGNSRDGGXXXXXXXXXXXXXXXXXXXXXXXVAVGSGTVVELNVMCGGASCLASMSIALGCRGLIVVTRM 160
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KN98_9PHAE2.180e-5658.86PAS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KRF4_9PHAE2.690e-2943.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCA0_ECTSI6.180e-2137.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:705412..708282 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBasic leucine zipper and PAS domain protein
Ec32 orthologEc-14_006560.1
Exons4
Model size477
Cds size465
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15488.1prot_C-linearis_contig8.15488.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 705412..708270 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930514.8596034-CDS-C-linearis_contig8:705411..7056281622930514.8596034-CDS-C-linearis_contig8:705411..705628Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 705412..705628 -
1690881108.7969556-CDS-C-linearis_contig8:705411..7056281690881108.7969556-CDS-C-linearis_contig8:705411..705628Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 705412..705628 -
1622930514.8713918-CDS-C-linearis_contig8:705963..7060351622930514.8713918-CDS-C-linearis_contig8:705963..706035Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 705964..706035 -
1690881108.8079603-CDS-C-linearis_contig8:705963..7060351690881108.8079603-CDS-C-linearis_contig8:705963..706035Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 705964..706035 -
1622930514.884734-CDS-C-linearis_contig8:707729..7078211622930514.884734-CDS-C-linearis_contig8:707729..707821Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 707730..707821 -
1690881108.8171363-CDS-C-linearis_contig8:707729..7078211690881108.8171363-CDS-C-linearis_contig8:707729..707821Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 707730..707821 -
1622930514.9021175-CDS-C-linearis_contig8:708186..7082701622930514.9021175-CDS-C-linearis_contig8:708186..708270Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 708187..708270 -
1690881108.8260972-CDS-C-linearis_contig8:708186..7082701690881108.8260972-CDS-C-linearis_contig8:708186..708270Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 708187..708270 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930514.9205527-UTR-C-linearis_contig8:708270..7082821622930514.9205527-UTR-C-linearis_contig8:708270..708282Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 708271..708282 -
1690881108.8354008-UTR-C-linearis_contig8:708270..7082821690881108.8354008-UTR-C-linearis_contig8:708270..708282Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 708271..708282 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15488.1

>prot_C-linearis_contig8.15488.1 ID=prot_C-linearis_contig8.15488.1|Name=mRNA_C-linearis_contig8.15488.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=155bp
MEGSAQRNKNYCRESRLRKHQTELLLREEVEVLTLYEMLVEQGPELFSCH
RVEPEAPFSFVCESFYHRLQVTPDDLVGKPLASIVDPRDGLILTTALSQV
LANRKETGGDDHAEPEGGTLVNLRISVRGITCGASMTMALGEQGLIVVTR
LYGI*
back to top

mRNA from alignment at C-linearis_contig8:705412..708282-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15488.1 ID=mRNA_C-linearis_contig8.15488.1|Name=mRNA_C-linearis_contig8.15488.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2871bp|location=Sequence derived from alignment at C-linearis_contig8:705412..708282- (Chordaria linearis ClinC8C monoicous)
GGAGCCAAGAGCATGGAGGGATCAGCTCAGCGCAACAAGAACTATTGCCG
GGAGAGCAGATTGCGGAAACATCAAACGGAACTGCTTTTGCGGGAGGTAC
GTCTTCTAGGTGTGTCCGACGAAATGCGTTGATGACGTCGGTCGCGGGGG
CTGAGGGTTTGATCTATTTAGAACACCGAGCGCTCCTCCTGCTTTTGAAA
AACGCGAAAAAACGCTGAAACACACCTGACGTTCATGATGAACACAGATT
ATATCATTATGCCCAATCTAAACATACATCTAAACACACCTACTACCTAC
ACCTCAATAACAATCCCTTCTTGGCATTATTGGATGAAATGATGTTTTCT
CTAACTTCCTCGCACCCGTTCCCCGCTCTCGGTGTTTCCGCCCACTCAAC
TGCCTGCCTGTCTATACCCTGCCTGTTTGTGTGCCTGCGCGCCTGCTCCC
CGCAACACCAGGAGGTCGAAGTGCTCACTCTGTATGAAATGCTGGTGGAG
CAGGGCCCTGAACTATTCTCCTGTCACCGAGTTGAGCCGGAGGCCCCTTT
CAGGTAGTAACACGATCGACTCGCTCGCGCCGTTTTTTTTTGTCGGTATC
ATAGCGGCGTAGGACTGAGCGGTCGACGGTCGCGGTCTTCTAGGTTAAAT
TATGTACTACCTACACAGACAGAGTGTTCGATGTTTTATTTTTGTCGACA
TGTATGTCTCCTTGTCTGCTTCCCTTGTACAGACAGTAACATATAATATA
TATATGCACCTTACTTAGTCGGTAGAGAGGGATCCGACTATCTAGATATA
GTATTTTCCTTGCCGGGGGAACTGGGACGGAACGCCCCGGCTTCGTAGGG
GTAGCAAGATAGAATCGGGAGGTTATACCCCCCCTGGTTGGTGATGTTTG
CGCTCCACTCTTTCTTATGTTATTTTTATTTTTGCCTCAAATAGCGTGTA
GACTAGAGGGGAGCGGAGGGCTCCAGACTAATTGTTTCTTCCTGATTCTT
TTATTTTTCTCGTATTTTATCGCTCTGCTGACCCTTGGGGTCCGTTTTAT
TTTTCAGTATGCCTTTTTAGGTAAGTTAGCTTGTGACCACGGAAATTGGC
CGCGTCAAGTGATGGATTAGTACGGAGAGGTTGAGACAGAAGGAGGTACT
GGATAGAGACGAGACCGGGATGGTTTTTAATGTGAAGACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAGTAACAACAACACAG
CCTACAGACAGCAGTAAGTGCCAGGTCATGGGTTCGAGTCCCGACGAAGC
GAGTTTTTTTCTCACTTTCTTTCGTTCCTGGTACTACGTTGAAAGCGATA
AACATTGGAAAGCTCGTCAGTCAACACAAAAACGTCGACGTCATTGTTTG
ATGACGAGGGGAGGGATTGCTGTACCCGCCTCGCGATAAAAAGTTCAGAA
GAGGCAGGCACCGCAGGAGGAGGTAGTAGGTGGGGACAAAATATTAAAAG
AAAAAGAAGAAAAAAAAACGGCGTGGGTACCCCCTCCTGTGTGACCCCGA
TGTACATCTAGCTTGTTGTAGGGGCAGCAGTTCACCGAAAGGTGTATTAT
GTATGTGCACCTACTACACCGCAACGTGTAGACAGTGCGCACCAAACCGA
AGAGGAGAAGGCAGGCTAGGCCATTGTTTTTATTTTATTTCATTTTTTTA
TCTTCATATCTCGACTAACAACCGGAGCTCACAGCATTTCTGCCGGATAG
GAGCTCTAGCCCGTGGTCACACAGAAGGGTTCCTCTCCCTGAGGCCCCCC
ACCTTGATGGGACGACGAACAAAAAAAACAAAGTTGATGTGTTCCATGTT
TTTTGGTCTGCAGATTTTGTGATTTTGTTTGCTCTTGCTCCGCCACACAG
ACAGGAGAATTCCTGTGTCAAACATAGTAGGTAGTGCCCCCCCTACGATG
GAGGCGAGCTGAAATGAACCAACCAATGATTCACCCGCGGGGGGGGTTCT
CAAAGTTGGGAGCATGTTGTCGCGTTTCGGGGGGAGCTGGGAAGCTTGTT
GGGGGCCCGGGGCGTTCTCAAAGGATCATGTTGCTTGTTATTGCAAGAAC
AATCATCGCCTCACTCCAGAATATCTTCTACAGAATAGCATACCAGTAAA
TATACGGAGGAGGATAGGCGTGAGTGTACCTCATGTACGAAGTTCCATTC
TTGACCACATCGCCCCCCCCCGGCCCCCCCTCTCATTCTCTACCCAGCTT
CGTCTGCGAGAGCTTCTACCATCGGCTTCAAGTCACCCCGGACGATCTCG
TCGGGAAACCACTCGCAAGGTAGTACCATGGTTGTGGAGGGGTAGAGCTT
GTTGCTGTGGGGTTAGTCGAAAGTTAGTTGCTGTAATTTCTGATCAACAT
GCTCCTATCTGGCAGAAATGCTGTGAGCTCTGGTTACATGTGAAAATAAA
TAAAAATAAAATGAGGGAGAAGTCATGTTCTCGAAAGGCTGGTTTGTATG
GAGCTGGTGTTTTTTCTCCGGGGGAAGGGCTCTTCGGCTGCTATTTTAGA
AGCGTGGGATATACTGATGATGCCTGCATCCTACGAAATTGACATCCTAT
CCCTTTCTCCCTCCGTCCATGCTTGTCCGTTCCCCTCCCTGTTCGCGTCA
CCAGCATCGTGGATCCGCGAGACGGGTTGATTTTGACGACGGCTCTTAGC
CAAGTCTTGGCCAACCGCAAGGAAACTGGAGGAGACGACCATGCAGAGCC
CGAGGGCGGCACCTTGGTGAACTTGCGGATTTCCGTTCGGGGGATCACGT
GCGGGGCGAGCATGACAATGGCACTCGGCGAACAGGGACTTATCGTTGTC
ACTAGACTATACGGTATCTGA
back to top

Coding sequence (CDS) from alignment at C-linearis_contig8:705412..708282-

>mRNA_C-linearis_contig8.15488.1 ID=mRNA_C-linearis_contig8.15488.1|Name=mRNA_C-linearis_contig8.15488.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=930bp|location=Sequence derived from alignment at C-linearis_contig8:705412..708282- (Chordaria linearis ClinC8C monoicous)
ATGGAGGGATCAGCTCAGCGCAACAAGAACTATTGCCGGGAGAGCAGATT
GCGGAAACATCAAACGGAACTGCTTTTGCGGGAGATGGAGGGATCAGCTC
AGCGCAACAAGAACTATTGCCGGGAGAGCAGATTGCGGAAACATCAAACG
GAACTGCTTTTGCGGGAGGAGGTCGAAGTGCTCACTCTGTATGAAATGCT
GGTGGAGCAGGGCCCTGAACTATTCTCCTGTCACCGAGTTGAGCCGGAGG
CCCCTTTCAGGAGGTCGAAGTGCTCACTCTGTATGAAATGCTGGTGGAGC
AGGGCCCTGAACTATTCTCCTGTCACCGAGTTGAGCCGGAGGCCCCTTTC
AGCTTCGTCTGCGAGAGCTTCTACCATCGGCTTCAAGTCACCCCGGACGA
TCTCGTCGGGAAACCACTCGCAAGCTTCGTCTGCGAGAGCTTCTACCATC
GGCTTCAAGTCACCCCGGACGATCTCGTCGGGAAACCACTCGCAAGCATC
GTGGATCCGCGAGACGGGTTGATTTTGACGACGGCTCTTAGCCAAGTCTT
GGCCAACCGCAAGGAAACTGGAGGAGACGACCATGCAGAGCCCGAGGGCG
GCACCTTGGTGAACTTGCGGATTTCCGTTCGGGGGATCACGTGCGGGGCG
AGCATGACAATGGCACTCGGCGAACAGGGACTTATCGTTGTCACTAGACT
ATACGGTATCTGACATCGTGGATCCGCGAGACGGGTTGATTTTGACGACG
GCTCTTAGCCAAGTCTTGGCCAACCGCAAGGAAACTGGAGGAGACGACCA
TGCAGAGCCCGAGGGCGGCACCTTGGTGAACTTGCGGATTTCCGTTCGGG
GGATCACGTGCGGGGCGAGCATGACAATGGCACTCGGCGAACAGGGACTT
ATCGTTGTCACTAGACTATACGGTATCTGA
back to top