prot_C-linearis_contig8.15485.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig8.15485.1
Unique Nameprot_C-linearis_contig8.15485.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length180
Homology
BLAST of mRNA_C-linearis_contig8.15485.1 vs. uniprot
Match: D7G590_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G590_ECTSI)

HSP 1 Score: 306 bits (783), Expect = 2.180e-104
Identity = 165/182 (90.66%), Postives = 170/182 (93.41%), Query Frame = 0
Query:    1 MARTFALVACLVAFVAQASAFMIASASAGAAATIR---QGAAMSGFTGCSPVCQRDATADRSTLRMMRHRKGFKKLNLPADQRKALLRGLTTQIIRHGRITTTMVRAKAVRKRVDHMITLSKNGSLHARRQAMGYMYDKQLVHALFESGAERYGERPGGYTRIIRTTPRKGDNAKMAIIELV 179
            MARTFALVACLVA +AQAS+FMI     GAAATIR   QGAA+SGFTGC+PVCQRDAT DRS LRMMRHRKGFKKLNLPADQRKALLRGLTTQIIRHGRITTTMVRAKAVRK VDHMITLSKNGSLHARRQAMGY+YDKQLVHALFESGAERYGERPGGYTRIIRTTPRKGDNAKMAIIELV
Sbjct:    1 MARTFALVACLVALIAQASSFMIGP-GGGAAATIRAQRQGAAVSGFTGCNPVCQRDATTDRSALRMMRHRKGFKKLNLPADQRKALLRGLTTQIIRHGRITTTMVRAKAVRKHVDHMITLSKNGSLHARRQAMGYIYDKQLVHALFESGAERYGERPGGYTRIIRTTPRKGDNAKMAIIELV 181          
BLAST of mRNA_C-linearis_contig8.15485.1 vs. uniprot
Match: A0A7S1DX23_9STRA (Hypothetical protein n=2 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1DX23_9STRA)

HSP 1 Score: 194 bits (494), Expect = 2.030e-60
Identity = 103/155 (66.45%), Postives = 123/155 (79.35%), Query Frame = 0
Query:   28 AGAAATIRQGAAMSGFTGCSPVCQRDATA---DRSTLRMMRHRKGFKKLNLPADQRKALLRGLTTQIIRHGRITTTMVRAKAVRKRVDHMITLSKNGSLHARRQAMGYMYDKQLVHALFESGAERYGERPGGYTRIIRTTPRKGDNAKMAIIELV 179
            AGA+A +  G+A +G+ G + + Q   T     +S L MMRHRKGFKKL  PADQRKALLR LTT+IIRHGRI TT+VRA+AVRK VDHMITL K G LHARRQAM ++YDK LVHALF++  ERYG+R GGYTR++RT PR+GDNAKMA+IELV
Sbjct:   27 AGASAYVVGGSAFTGY-GMATLQQAPPTTISRTKSNLDMMRHRKGFKKLGKPADQRKALLRALTTEIIRHGRIKTTLVRARAVRKHVDHMITLGKRGDLHARRQAMSWVYDKNLVHALFDAAPERYGDRNGGYTRVLRTVPRQGDNAKMAVIELV 180          
BLAST of mRNA_C-linearis_contig8.15485.1 vs. uniprot
Match: A0A6V2NXL1_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2NXL1_9STRA)

HSP 1 Score: 191 bits (484), Expect = 4.270e-59
Identity = 107/176 (60.80%), Postives = 124/176 (70.45%), Query Frame = 0
Query:    9 ACLVAFVAQASAFMIASASAGAAATIRQGAAMSGFTGCSPVCQ-----RDATADRSTLRMMRHRKGFKKLNLPADQRKALLRGLTTQIIRHGRITTTMVRAKAVRKRVDHMITLSKNGSLHARRQAMGYMYDKQLVHALFESGAERYGERPGGYTRIIRTTPRKGDNAKMAIIELV 179
            A L  FVA A+AF + S              +S FTG S   +     R A A RS L MMRHR   KKLN PADQRKALLR LTT++IRHGRI TT+VRAKAVRK VDHMI L K G LHARRQA+G++YDK LVH+LFE+  ERY +R GGYTR++RT PR+GDNAKMA+IELV
Sbjct:    5 ALLATFVAAANAFGVGS--------------LSSFTGTSITLEPTYVVRGAPAGRSDLSMMRHRNKLKKLNKPADQRKALLRALTTEVIRHGRIKTTLVRAKAVRKHVDHMIELGKRGDLHARRQALGWVYDKDLVHSLFEAAPERYSDRNGGYTRVLRTMPRQGDNAKMAVIELV 166          
BLAST of mRNA_C-linearis_contig8.15485.1 vs. uniprot
Match: A0A7S3P3S4_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P3S4_9STRA)

HSP 1 Score: 190 bits (483), Expect = 6.060e-59
Identity = 93/125 (74.40%), Postives = 107/125 (85.60%), Query Frame = 0
Query:   55 TADRSTLRMMRHRKGFKKLNLPADQRKALLRGLTTQIIRHGRITTTMVRAKAVRKRVDHMITLSKNGSLHARRQAMGYMYDKQLVHALFESGAERYGERPGGYTRIIRTTPRKGDNAKMAIIELV 179
            TA RS L MMRHRKGFK L  PADQRKALLR LTT++IRHGRI TT+VRAKAVRK VDH+I L K G LHARRQAM ++YDKQLVHALFE+  +RYG++ GGYTR++RT PR+GDNAKMA+IELV
Sbjct:   42 TAARSELSMMRHRKGFKTLGKPADQRKALLRALTTEVIRHGRIKTTLVRAKAVRKHVDHIIELGKRGDLHARRQAMAWVYDKQLVHALFEAAPDRYGDQNGGYTRVLRTVPRQGDNAKMAVIELV 166          
BLAST of mRNA_C-linearis_contig8.15485.1 vs. uniprot
Match: A0A448ZH01_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZH01_9STRA)

HSP 1 Score: 187 bits (475), Expect = 7.950e-58
Identity = 97/138 (70.29%), Postives = 112/138 (81.16%), Query Frame = 0
Query:   43 FTGCSPVCQRD-ATADRSTLRMMRHRKGFKKLNLPADQRKALLRGLTTQIIRHGRITTTMVRAKAVRKRVDHMITLSKNGSLHARRQAMGYMYDKQLVHALFESGAERYGERPGGYTRIIRTTPRKGDNAKMAIIELV 179
            FTG SPVC  + A+A  + L M+ HRKGFKKL  PADQRKALLR LTT+ IRHGRI TT+VRA+AVRK VDHMI L K G LHARRQAMG+MYDKQLVH+LFE+  +RY +R GGY R++RT  R+GDNAKMAIIELV
Sbjct:   23 FTG-SPVCLSERASAPSTQLSMISHRKGFKKLGKPADQRKALLRALTTETIRHGRIKTTLVRARAVRKHVDHMIELGKRGDLHARRQAMGWMYDKQLVHSLFEAAPDRYADRNGGYCRVLRTVARQGDNAKMAIIELV 159          
BLAST of mRNA_C-linearis_contig8.15485.1 vs. uniprot
Match: A0A7S1C082_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1C082_9STRA)

HSP 1 Score: 186 bits (473), Expect = 2.000e-57
Identity = 107/165 (64.85%), Postives = 123/165 (74.55%), Query Frame = 0
Query:   19 SAFMIASASAGAAATIRQGAAMSGFTGCSPVCQRDA---TADRST-LRMMRHRKGFKKLNLPADQRKALLRGLTTQIIRHGRITTTMVRAKAVRKRVDHMITLSKNGSLHARRQAMGYMYDKQLVHALFESGAERYGERPGGYTRIIRTTPRKGDNAKMAIIELV 179
            S+ +IA ASA A A       MS FTG S V Q  A    A R T L MMRHRK   +   PADQRKAL+R LTT+IIRHGRI TT+VRA+AVRK VDHMI L K+GSLH+RRQAM +MYDKQLVHALFE+  ERY +R GGYTR++RT PR+GDNAKMA+IELV
Sbjct:    8 SSLLIAGASAFAPA------GMSSFTGASVVSQDTAFYRLASRGTDLSMMRHRKKIARCGRPADQRKALMRALTTEIIRHGRIKTTLVRARAVRKHVDHMIQLGKDGSLHSRRQAMAWMYDKQLVHALFEAAPERYEDRNGGYTRVLRTMPRQGDNAKMAVIELV 166          
BLAST of mRNA_C-linearis_contig8.15485.1 vs. uniprot
Match: A0A7S2HZN5_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HZN5_9STRA)

HSP 1 Score: 186 bits (472), Expect = 2.930e-57
Identity = 92/133 (69.17%), Postives = 107/133 (80.45%), Query Frame = 0
Query:   47 SPVCQRDATADRSTLRMMRHRKGFKKLNLPADQRKALLRGLTTQIIRHGRITTTMVRAKAVRKRVDHMITLSKNGSLHARRQAMGYMYDKQLVHALFESGAERYGERPGGYTRIIRTTPRKGDNAKMAIIELV 179
            S    R  +  R+ L MMRHRK  KKLN PADQRKALLR LTT++IRHGRI TT+VRAKAVRK VDHMI L K G LHARRQA+G++YDK LVH+LFE+  ERY +R GGYTR++RT PR+GDNAKMA+IELV
Sbjct:   35 STYAARGVSNGRADLSMMRHRKKLKKLNKPADQRKALLRALTTEVIRHGRIKTTLVRAKAVRKHVDHMIELGKRGDLHARRQALGWVYDKDLVHSLFEAAPERYSDRNGGYTRVLRTMPRQGDNAKMAVIELV 167          
BLAST of mRNA_C-linearis_contig8.15485.1 vs. uniprot
Match: A0A1Z5J8C0_FISSO (Large subunit ribosomal protein L17 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J8C0_FISSO)

HSP 1 Score: 184 bits (467), Expect = 1.980e-56
Identity = 90/122 (73.77%), Postives = 103/122 (84.43%), Query Frame = 0
Query:   58 RSTLRMMRHRKGFKKLNLPADQRKALLRGLTTQIIRHGRITTTMVRAKAVRKRVDHMITLSKNGSLHARRQAMGYMYDKQLVHALFESGAERYGERPGGYTRIIRTTPRKGDNAKMAIIELV 179
            RS L MMRHRKGFK L  PADQRKALLR LTT++IRHGRI TT+VRAKAVRK VDHMI L K G LHARRQAM ++YDK LVH+LFE+  +RYGE+ GGYTR++RT  R+GDNAKMAI+ELV
Sbjct:   51 RSELNMMRHRKGFKTLGKPADQRKALLRALTTEVIRHGRIKTTLVRAKAVRKHVDHMIELGKRGDLHARRQAMAWVYDKNLVHSLFEAAPDRYGEQNGGYTRVLRTVARQGDNAKMAILELV 172          
BLAST of mRNA_C-linearis_contig8.15485.1 vs. uniprot
Match: A0A836CL42_9STRA (Ribosomal protein L17 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL42_9STRA)

HSP 1 Score: 183 bits (464), Expect = 4.510e-56
Identity = 98/150 (65.33%), Postives = 113/150 (75.33%), Query Frame = 0
Query:   30 AAATIRQGAAMSGFTGCSPVCQRDATADRSTLRMMRHRKGFKKLNLPADQRKALLRGLTTQIIRHGRITTTMVRAKAVRKRVDHMITLSKNGSLHARRQAMGYMYDKQLVHALFESGAERYGERPGGYTRIIRTTPRKGDNAKMAIIELV 179
            AAA     A +S F G + V  R+       L+MMRH K   KL  PADQRKALLR LTT++IRHGRI TT+VRA+AVRK VDHMI L K+GSLH+RRQAMG+MYDK LVHALFE   ERYGER GGY R+++T PR+GDNAKMAIIELV
Sbjct:   17 AAAFCMPTARVSSFQGAA-VASRNVVVAEGGLQMMRHMKRVAKLGKPADQRKALLRSLTTEVIRHGRIKTTLVRARAVRKFVDHMIQLGKDGSLHSRRQAMGFMYDKALVHALFEQAPERYGERNGGYCRVLKTMPRQGDNAKMAIIELV 165          
BLAST of mRNA_C-linearis_contig8.15485.1 vs. uniprot
Match: K0TAZ9_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TAZ9_THAOC)

HSP 1 Score: 184 bits (468), Expect = 9.610e-56
Identity = 99/145 (68.28%), Postives = 112/145 (77.24%), Query Frame = 0
Query:   40 MSGFTGC--SPVCQRDATADRS---TLRMMRHRKGFKKLNLPADQRKALLRGLTTQIIRHGRITTTMVRAKAVRKRVDHMITLSKNGSLHARRQAMGYMYDKQLVHALFESGAERYGERPGGYTRIIRTTPRKGDNAKMAIIELV 179
            +S FTG   S V +  A A  S   +L MMRHRK   KL  PADQRKALLR LTT+IIRHGRI TT VRAKAVRK VDHM+ L K G LHARRQA+G++YDK LVHALFE+  ERYGER GGYTR++RT PR+GDNAKMA+IELV
Sbjct:   90 VSSFTGTHISTVMEPAARAHHSKSSSLEMMRHRKRVPKLGKPADQRKALLRALTTEIIRHGRIKTTAVRAKAVRKHVDHMVELGKRGDLHARRQALGWIYDKDLVHALFEAAPERYGERNGGYTRVLRTMPRQGDNAKMAVIELV 234          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15485.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G590_ECTSI2.180e-10490.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1DX23_9STRA2.030e-6066.45Hypothetical protein n=2 Tax=Thalassionema nitzsch... [more]
A0A6V2NXL1_9STRA4.270e-5960.80Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S3P3S4_9STRA6.060e-5974.40Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A448ZH01_9STRA7.950e-5870.29Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S1C082_9STRA2.000e-5764.85Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S2HZN5_9STRA2.930e-5769.17Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A1Z5J8C0_FISSO1.980e-5673.77Large subunit ribosomal protein L17 n=2 Tax=Fistul... [more]
A0A836CL42_9STRA4.510e-5665.33Ribosomal protein L17 n=1 Tax=Tribonema minus TaxI... [more]
K0TAZ9_THAOC9.610e-5668.28Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000456Ribosomal protein L17PFAMPF01196Ribosomal_L17coord: 83..179
e-value: 4.6E-34
score: 117.2
IPR000456Ribosomal protein L17TIGRFAMTIGR00059TIGR00059coord: 70..179
e-value: 4.1E-41
score: 137.8
IPR000456Ribosomal protein L17PANTHERPTHR14413RIBOSOMAL PROTEIN L17coord: 41..179
IPR000456Ribosomal protein L17PROSITEPS01167RIBOSOMAL_L17coord: 97..119
IPR000456Ribosomal protein L17HAMAPMF_01368Ribosomal_L17coord: 68..179
score: 25.562
IPR036373Ribosomal protein L17 superfamilyGENE3D3.90.1030.10coord: 64..179
e-value: 8.6E-46
score: 157.0
IPR036373Ribosomal protein L17 superfamilySUPERFAMILY64263Prokaryotic ribosomal protein L17coord: 64..179
NoneNo IPR availablePANTHERPTHR14413:SF1850S RIBOSOMAL PROTEIN L17, CHLOROPLASTICcoord: 41..179
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..16
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 29..179
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..20
score: 0.917
NoneNo IPR availableTMHMMTMhelixcoord: 5..27

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:691995..695639 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15485.1mRNA_C-linearis_contig8.15485.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig8 691917..696492 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig8.15485.1 ID=prot_C-linearis_contig8.15485.1|Name=mRNA_C-linearis_contig8.15485.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=180bp
MARTFALVACLVAFVAQASAFMIASASAGAAATIRQGAAMSGFTGCSPVC
QRDATADRSTLRMMRHRKGFKKLNLPADQRKALLRGLTTQIIRHGRITTT
MVRAKAVRKRVDHMITLSKNGSLHARRQAMGYMYDKQLVHALFESGAERY
GERPGGYTRIIRTTPRKGDNAKMAIIELV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000456Ribosomal_L17
IPR036373Ribosomal_L17_sf