prot_C-linearis_contig79.15439.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig79.15439.1
Unique Nameprot_C-linearis_contig79.15439.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length201
Homology
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BLAST of mRNA_C-linearis_contig79.15439.1 vs. uniprot
Match: A0A6H5JJ53_9PHAE (Ion_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJ53_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 6.060e-20
Identity = 63/88 (71.59%), Postives = 67/88 (76.14%), Query Frame = 0 
Query:   45 MSDKPGGAFSGLRPTSFSRGTRPARSRVSSITEEEQ-TGEQPLVSQSYSGGFGRSESSLGGGDKGNGGGDRPISSRRIAGTRSGDREG 131
            MSDKPGGAFSGLR TSFS    PARSRVSSI EE++  G QPLVSQSYSGGFGRSESSLG G          ISSRRIAG+RS DR+G
Sbjct:    1 MSDKPGGAFSGLRSTSFSIARGPARSRVSSIEEEDRRAGNQPLVSQSYSGGFGRSESSLGVGGA--------ISSRRIAGSRSADRDG 80
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig79.15439.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JJ53_9PHAE6.060e-2071.59Ion_trans domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig79contigC-linearis_contig79:725929..730244 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig79.15439.1mRNA_C-linearis_contig79.15439.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig79 725603..730244 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig79.15439.1 ID=prot_C-linearis_contig79.15439.1|Name=mRNA_C-linearis_contig79.15439.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=201bp
MARSRGRSRGRSGHLPAPVASVLQSPKDAPLEFFQESSRPLSARMSDKPG
GAFSGLRPTSFSRGTRPARSRVSSITEEEQTGEQPLVSQSYSGGFGRSES
SLGGGDKGNGGGDRPISSRRIAGTRSGDREGRGRSSRGDKDGRRRLSSRS
RSTSQAGTRSAASASKSSAAAVVSAGDRADGSGSVGKGGGSGSGGGSGSG
G
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