mRNA_C-linearis_contig79.15439.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig79.15439.1
Unique NamemRNA_C-linearis_contig79.15439.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig79.15439.1 vs. uniprot
Match: A0A6H5JJ53_9PHAE (Ion_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJ53_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 9.620e-19
Identity = 63/88 (71.59%), Postives = 67/88 (76.14%), Query Frame = 3 
Query:  459 MSDKPGGAFSGLRPTSFSRGTRPARSRVSSITEEEQ-TGEQPLVSQSYSGGFGRSESSLGGGDKGNGGGDRPISSRRIAGTRSGDREG 719
            MSDKPGGAFSGLR TSFS    PARSRVSSI EE++  G QPLVSQSYSGGFGRSESSLG G          ISSRRIAG+RS DR+G
Sbjct:    1 MSDKPGGAFSGLRSTSFSIARGPARSRVSSIEEEDRRAGNQPLVSQSYSGGFGRSESSLGVGGA--------ISSRRIAGSRSADRDG 80
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig79.15439.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JJ53_9PHAE9.620e-1971.59Ion_trans domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig79contigC-linearis_contig79:725603..730244 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.6
Seed ortholog evalue1.1e-19
Seed eggNOG ortholog2880.D7FTQ3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.calcium ion transmembrane transport
EggNOG OGsKOG3676@1,KOG3676@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size931
Cds size603
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig79.15439.1prot_C-linearis_contig79.15439.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig79 725929..730244 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930486.6377726-UTR-C-linearis_contig79:725602..7259281622930486.6377726-UTR-C-linearis_contig79:725602..725928Chordaria linearis ClinC8C monoicousUTRC-linearis_contig79 725603..725928 +
1690881094.8115678-UTR-C-linearis_contig79:725602..7259281690881094.8115678-UTR-C-linearis_contig79:725602..725928Chordaria linearis ClinC8C monoicousUTRC-linearis_contig79 725603..725928 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930486.6554787-CDS-C-linearis_contig79:725928..7259661622930486.6554787-CDS-C-linearis_contig79:725928..725966Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 725929..725966 +
1690881094.8239982-CDS-C-linearis_contig79:725928..7259661690881094.8239982-CDS-C-linearis_contig79:725928..725966Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 725929..725966 +
1622930486.6800108-CDS-C-linearis_contig79:729679..7302441622930486.6800108-CDS-C-linearis_contig79:729679..730244Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 729680..730244 +
1690881094.8331618-CDS-C-linearis_contig79:729679..7302441690881094.8331618-CDS-C-linearis_contig79:729679..730244Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 729680..730244 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig79.15439.1

>prot_C-linearis_contig79.15439.1 ID=prot_C-linearis_contig79.15439.1|Name=mRNA_C-linearis_contig79.15439.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=201bp
MARSRGRSRGRSGHLPAPVASVLQSPKDAPLEFFQESSRPLSARMSDKPG
GAFSGLRPTSFSRGTRPARSRVSSITEEEQTGEQPLVSQSYSGGFGRSES
SLGGGDKGNGGGDRPISSRRIAGTRSGDREGRGRSSRGDKDGRRRLSSRS
RSTSQAGTRSAASASKSSAAAVVSAGDRADGSGSVGKGGGSGSGGGSGSG
G
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mRNA from alignment at C-linearis_contig79:725603..730244+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig79.15439.1 ID=mRNA_C-linearis_contig79.15439.1|Name=mRNA_C-linearis_contig79.15439.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4642bp|location=Sequence derived from alignment at C-linearis_contig79:725603..730244+ (Chordaria linearis ClinC8C monoicous)
CTCGTGTGGGAGCTCCATCAAGAGCTCAAGAGCCCGGGAAATATGAACAC
AGAACATCAGAACATACATAGCTCGGGAAAGGCCCCGCGCTAGACAGGAG
AGGATAACACCGGGGTAGTGCGTGGAAGGGAGAACGCGAGACTGGGGGGT
AGGTAAAACAAGGGGAGAAGAAACAAGGAGGACAGGAGCACAGCAGTAGT
GAATCGCGGGGCGGTTGGGAGATTCTGGGCTCTTGGCTGAGCGACGGGGC
TGTGTTTGAAACACTCGCAGCAGGGGCAAGGACAGGAAGCAAGAGGGCGG
AGATCAGCCAGGGGAGCCGAAAGAGGATGGCTCGCAGTCGCGGTCGCAGT
CGCGGTCGAAGCGGGTGAGTGGTGGAGAAAGAGAAAGCCAGCGGTGTTTC
TGTGAGCCAGCCATACGTGCTTTGGTTCTGAACCGTGGTCGGCCCAACAC
GTAAACGCAGGCACGGAACTGCGACCTAGAGGCCATGGGCTTTGTACGTG
CCCCTGAACGGCCGGTACTGCCTCTGCCGCTTCTCACGCTACCTTGGCCC
TTCAAGGAAAGGGTGTTTACCCGGTTGTCAGAGTGATTGGGTTCTTCGCT
TGTCTACACATCTATTGTTGTACCCATCCTCTTCCGGCCCTCGTACGATA
CGATATCTCCGCGAACGAAGACAGAAGGGTCGCACAACCAATGACAAGTT
ACCATCTCTCGCCCATGAGAAGGAAGACACAACCGCTTACAGGAGCTTTT
ACCGTCGAATGCTTAAATGCACCCGCGTCCGGACACAAGGCGCACACCGC
GCACAAGCTTTACCTGTCGCATCGAACTGGAAATCCGTGAGAGACCATAA
GTACAGTATCTGCATCACCGGTAGGGCTTGCTCACGAGAGGCAAAAGTGT
AACAGCACAGAAAACATGTGCCACTTTTCAGTCACCAGAGAGTTGTTTGG
CCGCTTACAGCAGTAGTACATAAAATAAAGGACAGCGTCCGTGGACCGAC
ATACTGGTAAATAATATAGTCAACCCGTGTTCCTGATTCGAGCCAGCAGT
GTGTGTGAGAGGGATTCTGTCTGGGTGCTCAAAAGCTGAAAAGCCGGAGG
AGGTGCCTGCTGGGACAGGCACCCCCATTTTTGCATTTTTGTGGTGTTTC
GTTCATCTCCGAGTAGACTACTTGAAGTACATATCAAAAACAAGAAAACA
AGTCGTTGACACCTGCCCGGCCTACGCAACAAGTAAATGTCCAGTTGGGC
TCCAGAATGCGCTACGTAGATACTTCGTATGTGCACATGAATCCAAAAGT
TAAAGTTACGATGGTTAATTGATTCTGATCTTTGATCCACGACGATGTTG
AATAAAGGGACGCACACCCGCCCTTCCTTTCCCCCCTGCACGGCGTTTTG
CCCCTTGGGACTGCTGTAAGCATCAGCACTGAACGTACGCCCTTTTTTTG
CGCAATACTTATACTTGACCATCCCAACACCTCAACACCTCTGCCTGCCG
CCTTCTTGCGACTACCGGAGGGAGTGCCTGTGGTGTCCAGTGTCGATAGA
AAAGGTACAGCGTATGAACTCGTTAGCTTCCGAATTGTGGCTCGATCAAG
AGGCGAACCCAAACCGTTCTCGAGGCGAGCAGGGGGGTGGCAGCAGAGAG
CTCAAGGTGCCGAGAAACAGAAGCAGCCCAGCTCCAGCCTGCTGGGGTGT
CTTGTTTTCTCTTTGTTGGGAGAGAGAATCATGTGTGCATTGCGATGCGT
CAAGATTGTTGCGTATAAATTACATGGCCACGCGGAGAGCGGTTGTTGTT
GCCGAGCTCGGGCGTAAGTAGCGCAGCCCCGCGACGCGCCTGTTGGCTTG
ATTGATTGTGTCGCGAGATTTTGTCCGGTGCCTGTCTAGTTTAATTAATT
TGTCGAGAGTTTCGAGTTTCGGAATTATATGCCGTTTGGCGGCATCCCAT
CTCAATAAAATACAGTATACAACACGATATTCTGAACAACAGAGATTACG
GTATTCGTGGTCTTGGGTCGGGTTTTTGTTTGCGTTGTCCGATACCATAC
TTCGTATGTAGGTGTTGTTTGTTTGATGTGTGATGTTGGGTGAGTGCATT
CAGCAAGCGGCAGCAATTGGCTGCACTGCTCATTTACTTCCCGACCGATC
AATTGCGCGCACCGACTCTACATCTGTCTCTCTGAGTTGCGCTGCGTGGT
ATGCCTCTCCGTGTCTGACTGAACCCCTCTGGAATCGCAGTTTAGTTGCG
CACCCGTTTGATACAGCCTAACCCTAACCCTAAATGTCTGCACGCTCTTC
ATCTTCATCATGCACCATGAGTCTCAAGATAGGACCTGGGGACCTGGGGA
TGTGTACCCCCGGGGTTGGTGATTTTGATGTCTCCAGTTTTATTTAATTT
TTATTTGTATCTCGCACAGCAGCTTAGCCGGTCGCCCCGGTGGTCTAGTT
GGTTAAACCGCACACCTTCTAGCGCCCAGGTCACGGGTTCGAATCTCGGC
GTATGCGATCTTTTCTCACAATAAAAACCTTGAGTTTTTCTCTCGAAGAC
GTCCCTGGTTGTGGAAAGCGCTATAGTAGTCGTGTGTACACAGAGGGAAG
AGGTTGCCGCGCTCTTCCCGCATTAAAAATCGAAGGCGAGGCACCGCAGG
AGGGGAGGGCGGGGGGCCTCAGGGAGAGGAACCCTTCTGTGTGACCACGG
GCTACAGCAGTAGAGCTCCTATCCGGCAGAAATGCTGTGAGCACTGGTTA
TATGTGAAGATAAAATAAAATAAAAATAAAATAGCGTGCAGAGGGGAGCG
GAGGGCTCCAAACTCTTTGTTTTGATTTTAAATTTTATCGCTCTGCTGAC
CCTTCGGGTTCATTTATTTTTAGTGTTTTAGTTTTTTATAAGGTAAGTTA
ACCTGTGACCGCGGGAATTGGCCGTGTCTGTTGGATCAGTACGGACAAAA
GGGGATACTGGGTGGAGAGAGACGGGATGCTTTTTAATGTGAGTACAACA
ACAAGAACAACAAGAACAACAAAAACAACAGCATGAGTCTGTTTATTGAG
GCTCTCCTCCCATTCCACACCGTATCTCATTCCACACCAATGTCTGCCAT
CGCGTCGATGCTCTGTACGTACCCATACAAAGCAAGGCAGACGGACTTAC
CTGGTACCTGGTACCTGGTACCTGGTACTTGGTACAACAATAGCCATTGT
TACCCTGGAAAAGAGCTTTCTTGACAGGTTCGACTCTACCTGCCGCCGTG
TTAATAAACACATCTATAATAACTCTTTAACTCTATAAACTCTATAATTC
TAACGTACCTGGTACAAGTAAGTGATGAGAGAGGCTGCTGGACCTTGACG
TTCTGTTCTGCTTGTTCCCCGCGGAAGTCCATACTTGTAGAAGTACATAT
GCTTAGGCCTTCCATGTCCGGCACTGCTGTCCTGTGAAGTGGAGCCAAAA
CGGGCCGTGAGCGCGCGGTGAATACAACGTGCACCCTGAGGTTTTTACCT
CCTTAAGAGCCGGAAACTGTCGCGAATGCCATCCCGCATATCATGATCAT
GATTTGACTCATCATGCTTATCTTGTTAGCTTGACGTCGGTCCTCAACCC
TGAGCATGCATTGGCATGTACATAAAAAAAAAAAATCGAAGAGCGTGTTC
CAAGCCTTTAGTTATAGTTCTACGAGTACAGTACCTGGTATGTAGTTTTG
AGCATTTGTTTTCGCACGCCATTGATGTTGTTTGATTTTTCCCGCATGTT
ACGGGTTGCGTGTGTCGTTACTGATGGACTCATGGAACTTCCGCTTGCCG
CCACTTGCCGGGGAGTGGTGTGTCCCCGGCGTATATTCTAGCCGCCCCCC
ATCTCATTCGCCGCGGGGCCGTCGCTGCTACATACTGCTGCCTCTTGGTC
TCTAAAACACTCCTCTGTCGCCTGCTGCCTGCTGCCTGTTGCCTGCTACA
ATACTTTTTTTCTTCTTGTCTTTTGTCTTTGTCTTTGTCTTTGTCTTCGT
CTTCGTCTTCGTCTTGTGTTTTGTCTTCCTCTTCGTCTTCGTCTCTGTCT
TTTTTTCCTCTGCGGAAATGAGCACAGCCACCTACCGGCCCCGGTGGCGT
CCGTGCTACAGTCCCCGAAGGACGCCCCCTTGGAATTCTTCCAGGAATCG
AGCCGCCCGCTATCGGCGCGCATGAGTGACAAGCCCGGCGGGGCATTCTC
AGGACTACGACCGACATCGTTCTCGCGCGGAACCAGGCCTGCAAGGTCCC
GCGTGTCGTCCATCACGGAGGAGGAGCAGACCGGGGAGCAGCCGCTGGTG
TCTCAGTCCTACTCTGGGGGTTTCGGGAGGTCGGAATCGTCCCTAGGCGG
GGGAGACAAGGGCAACGGGGGCGGGGACCGGCCGATTTCGTCGCGAAGGA
TAGCGGGCACCAGGTCTGGGGACCGGGAGGGCCGCGGGCGCAGCAGCAGG
GGGGACAAGGACGGGCGGCGGCGACTGAGCAGCAGGAGCCGCAGCACCAG
CCAAGCGGGCACGAGATCCGCCGCCAGCGCATCGAAATCTAGCGCTGCTG
CGGTGGTGTCCGCCGGGGACCGTGCGGACGGTAGCGGCAGCGTCGGTAAA
GGCGGCGGTAGTGGCAGCGGTGGCGGTAGTGGCAGCGGTGGC
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Coding sequence (CDS) from alignment at C-linearis_contig79:725603..730244+

>mRNA_C-linearis_contig79.15439.1 ID=mRNA_C-linearis_contig79.15439.1|Name=mRNA_C-linearis_contig79.15439.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1206bp|location=Sequence derived from alignment at C-linearis_contig79:725603..730244+ (Chordaria linearis ClinC8C monoicous)
ATGGCTCGCAGTCGCGGTCGCAGTCGCGGTCGAAGCGGATGGCTCGCAGT
CGCGGTCGCAGTCGCGGTCGAAGCGGCCACCTACCGGCCCCGGTGGCGTC
CGTGCTACAGTCCCCGAAGGACGCCCCCTTGGAATTCTTCCAGGAATCGA
GCCGCCCGCTATCGGCGCGCATGAGTGACAAGCCCGGCGGGGCATTCTCA
GGACTACGACCGACATCGTTCTCGCGCGGAACCAGGCCTGCAAGGTCCCG
CGTGTCGTCCATCACGGAGGAGGAGCAGACCGGGGAGCAGCCGCTGGTGT
CTCAGTCCTACTCTGGGGGTTTCGGGAGGTCGGAATCGTCCCTAGGCGGG
GGAGACAAGGGCAACGGGGGCGGGGACCGGCCGATTTCGTCGCGAAGGAT
AGCGGGCACCAGGTCTGGGGACCGGGAGGGCCGCGGGCGCAGCAGCAGGG
GGGACAAGGACGGGCGGCGGCGACTGAGCAGCAGGAGCCGCAGCACCAGC
CAAGCGGGCACGAGATCCGCCGCCAGCGCATCGAAATCTAGCGCTGCTGC
GGTGGTGTCCGCCGGGGACCGTGCGGACGGTAGCGGCAGCGTCGGTAAAG
GCGGCGGTAGTGGCAGCGGTGGCGGTAGTGGCAGCGGTGGCCCACCTACC
GGCCCCGGTGGCGTCCGTGCTACAGTCCCCGAAGGACGCCCCCTTGGAAT
TCTTCCAGGAATCGAGCCGCCCGCTATCGGCGCGCATGAGTGACAAGCCC
GGCGGGGCATTCTCAGGACTACGACCGACATCGTTCTCGCGCGGAACCAG
GCCTGCAAGGTCCCGCGTGTCGTCCATCACGGAGGAGGAGCAGACCGGGG
AGCAGCCGCTGGTGTCTCAGTCCTACTCTGGGGGTTTCGGGAGGTCGGAA
TCGTCCCTAGGCGGGGGAGACAAGGGCAACGGGGGCGGGGACCGGCCGAT
TTCGTCGCGAAGGATAGCGGGCACCAGGTCTGGGGACCGGGAGGGCCGCG
GGCGCAGCAGCAGGGGGGACAAGGACGGGCGGCGGCGACTGAGCAGCAGG
AGCCGCAGCACCAGCCAAGCGGGCACGAGATCCGCCGCCAGCGCATCGAA
ATCTAGCGCTGCTGCGGTGGTGTCCGCCGGGGACCGTGCGGACGGTAGCG
GCAGCGTCGGTAAAGGCGGCGGTAGTGGCAGCGGTGGCGGTAGTGGCAGC
GGTGGC
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