prot_C-linearis_contig79.15404.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig79.15404.1
Unique Nameprot_C-linearis_contig79.15404.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length74
Homology
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BLAST of mRNA_C-linearis_contig79.15404.1 vs. uniprot
Match: A0A6H5K9W9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9W9_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.710e-13
Identity = 37/50 (74.00%), Postives = 43/50 (86.00%), Query Frame = 0 
Query:   19 RGGSGAGAEDSSRELLELRQELSDLRELIAARAGTTHQLQAEIDDLRLRV 68
            RG SG G  + S EL+ELR+ELSD+RELIA RAGTT+QLQAEIDDLRLR+
Sbjct:   59 RGASGVGEVEPSAELVELRRELSDMRELIATRAGTTYQLQAEIDDLRLRL 108
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig79.15404.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K9W9_9PHAE1.710e-1374.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 26..46

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig79contigC-linearis_contig79:320004..320316 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig79.15404.1mRNA_C-linearis_contig79.15404.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig79 320004..320318 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig79.15404.1 ID=prot_C-linearis_contig79.15404.1|Name=mRNA_C-linearis_contig79.15404.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=74bp
DGKHAIGSRPFGLEGGGGRGGSGAGAEDSSRELLELRQELSDLRELIAAR
AGTTHQLQAEIDDLRLRVSSDADG
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