mRNA_C-linearis_contig79.15404.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig79.15404.1
Unique NamemRNA_C-linearis_contig79.15404.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig79.15404.1 vs. uniprot
Match: A0A6H5K9W9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9W9_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.710e-13
Identity = 37/50 (74.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:   55 RGGSGAGAEDSSRELLELRQELSDLRELIAARAGTTHQLQAEIDDLRLRV 204
            RG SG G  + S EL+ELR+ELSD+RELIA RAGTT+QLQAEIDDLRLR+
Sbjct:   59 RGASGVGEVEPSAELVELRRELSDMRELIATRAGTTYQLQAEIDDLRLRL 108
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig79.15404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K9W9_9PHAE1.710e-1374.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig79contigC-linearis_contig79:320004..320318 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size224
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930486.4242496-CDS-C-linearis_contig79:320003..3200491622930486.4242496-CDS-C-linearis_contig79:320003..320049Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 320004..320049 +
1690881094.7051075-CDS-C-linearis_contig79:320003..3200491690881094.7051075-CDS-C-linearis_contig79:320003..320049Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 320004..320049 +
1622930486.437994-CDS-C-linearis_contig79:320140..3203161622930486.437994-CDS-C-linearis_contig79:320140..320316Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 320141..320316 +
1690881094.7257235-CDS-C-linearis_contig79:320140..3203161690881094.7257235-CDS-C-linearis_contig79:320140..320316Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 320141..320316 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig79.15404.1prot_C-linearis_contig79.15404.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig79 320004..320316 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig79.15404.1

>prot_C-linearis_contig79.15404.1 ID=prot_C-linearis_contig79.15404.1|Name=mRNA_C-linearis_contig79.15404.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=74bp
DGKHAIGSRPFGLEGGGGRGGSGAGAEDSSRELLELRQELSDLRELIAAR
AGTTHQLQAEIDDLRLRVSSDADG
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mRNA from alignment at C-linearis_contig79:320004..320318+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig79.15404.1 ID=mRNA_C-linearis_contig79.15404.1|Name=mRNA_C-linearis_contig79.15404.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=315bp|location=Sequence derived from alignment at C-linearis_contig79:320004..320318+ (Chordaria linearis ClinC8C monoicous)
GATGGTAAACACGCGATCGGGTCGAGGCCGTTCGGCCTCGAGGGGGGCGA
GCCGAGCCGCGGGGCGATCGACGTCGCGGACGGCGGCAGCGGTTGCAGCA
CAGCGGTCGGGCACGCCCCGACCACGTCGAGGACGAGGCGGCGGGCGCGG
CGGCAGTGGCGCCGGGGCGGAGGACTCCAGCAGGGAACTGCTCGAGCTTC
GCCAAGAACTCAGCGACCTGCGTGAGCTAATCGCGGCTCGCGCGGGTACT
ACCCACCAGTTGCAGGCGGAGATCGACGATCTCCGTCTGCGAGTGTCGAG
CGACGCGGACGGTGC
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Coding sequence (CDS) from alignment at C-linearis_contig79:320004..320318+

>mRNA_C-linearis_contig79.15404.1 ID=mRNA_C-linearis_contig79.15404.1|Name=mRNA_C-linearis_contig79.15404.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at C-linearis_contig79:320004..320318+ (Chordaria linearis ClinC8C monoicous)
GATGGTAAACACGCGATCGGGTCGAGGCCGTTCGGCCTCGAGGGGGGATG
GTAAACACGCGATCGGGTCGAGGCCGTTCGGCCTCGAGGGGGGCGGCGGG
CGCGGCGGCAGTGGCGCCGGGGCGGAGGACTCCAGCAGGGAACTGCTCGA
GCTTCGCCAAGAACTCAGCGACCTGCGTGAGCTAATCGCGGCTCGCGCGG
GTACTACCCACCAGTTGCAGGCGGAGATCGACGATCTCCGTCTGCGAGTG
TCGAGCGACGCGGACGGTGCGGCGGGCGCGGCGGCAGTGGCGCCGGGGCG
GAGGACTCCAGCAGGGAACTGCTCGAGCTTCGCCAAGAACTCAGCGACCT
GCGTGAGCTAATCGCGGCTCGCGCGGGTACTACCCACCAGTTGCAGGCGG
AGATCGACGATCTCCGTCTGCGAGTGTCGAGCGACGCGGACGGT
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