prot_C-linearis_contig79.15398.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig79.15398.1
Unique Nameprot_C-linearis_contig79.15398.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length689
Homology
BLAST of mRNA_C-linearis_contig79.15398.1 vs. uniprot
Match: D8LMJ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMJ5_ECTSI)

HSP 1 Score: 618 bits (1593), Expect = 7.520e-214
Identity = 326/551 (59.17%), Postives = 367/551 (66.61%), Query Frame = 0
Query:  138 EGNPKRPKKGLLGLGDRLAAKAAAIAKTAGKAMQAVTGGGRLRETPPYATASCFKRCNCGDGVPMDSTAFVPLQDGRTLQHEAVGMVTVRTEPLEGADFEFENRPPLAQVPPPPYALRLFLEYMDSRTVARCARASSEWHRECYEMNEEGLPVHPTYAGIHYMEPESSLDACQDKIDALFFHQPPSGNAGQLFTSGQRKVTVWRREEIKVQHFPCVASYENVGSGSQKNGESSAVVSQAEKSDSTSRIEVSWKTAGVCVRDTAPFTTIRPVNNSIICCSSNGSIREWSVAHEVKNTRFLAQMWEHNGFITDVVFTEPSVGFCKAHSAPQHSCYMYSVSDDRYLKVWDLANKECLHTVKPRVSDCGTLQSVTKSDFHLYVGSSIGRVIVFALGRVCQRPEKHRCHLHVEPQWFCEQESFELGKDPVQHMVCGGAGGRYKYLFTGARDGTIQVWNVPKASFGHTKVCTFREHKRAITALSLTKAHLFSASDEGHVRVWSLGTLCLQRVVRQDWRIKCIWVHHAPPDSPDAGTGSLFLGLATGLVLSYPITDAV 688
            +G PK+PKKGLLGLGDRLAA+AAAIAKTAG A+QAVTG GR RETPP+A A+CF+RCNC  GVP DSTAFVPLQ+GR L+HEAVG+VTVRTEPLEGA+ EFENRPPL + PPPPY LRLFLEYMDSRTVARCA  S EWHRECY+ NEEG+P+HP Y G+H+ME  S +DACQDKID +FFHQPP+G+ GQLFT+GQR+VT WRR+E +V       S  + GSGS K+GESS       + D+  RIEVSW++AGVC+RDTAPFT I PVN+           +  ++A    NT      W+         FT PSVGFCKAH APQHSCYMYSVSDDRYLKVWDLA K+CLHTVKP++SDCGT                                                                                    VWNVPKASFGHTKVCTFREHKRAITALSLTKAHLFSASDEGHV             VRQD RIKCIWVHHAPPDSPD G GSLFLGLATGLVL+YPITDAV
Sbjct:   96 DGTPKKPKKGLLGLGDRLAARAAAIAKTAGNALQAVTGEGRRRETPPWARAACFRRCNCNHGVPTDSTAFVPLQEGRKLEHEAVGVVTVRTEPLEGAELEFENRPPLERTPPPPYVLRLFLEYMDSRTVARCAHTSKEWHRECYQRNEEGVPMHPAYIGMHFMELGSQVDACQDKIDGMFFHQPPTGSPGQLFTAGQRRVTAWRRQETEVD-TEREQSTASEGSGSTKSGESSET--SHSEGDAAPRIEVSWQSAGVCLRDTAPFTMILPVNSR--------PRKNPNMAFHSANTSSCFLAWQ--------AFTAPSVGFCKAHGAPQHSCYMYSVSDDRYLKVWDLATKDCLHTVKPKISDCGT------------------------------------------------------------------------------------VWNVPKASFGHTKVCTFREHKRAITALSLTKAHLFSASDEGHV-------------VRQDRRIKCIWVHHAPPDSPDPGNGSLFLGLATGLVLAYPITDAV 530          
BLAST of mRNA_C-linearis_contig79.15398.1 vs. uniprot
Match: A0A6U4D539_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4D539_9STRA)

HSP 1 Score: 195 bits (496), Expect = 5.890e-51
Identity = 127/429 (29.60%), Postives = 202/429 (47.09%), Query Frame = 0
Query:  235 DFEFENRPPLAQVPPPPYALRLFLEYMDSRTVARCARASSEWHRECYEMNEEGLPVHPTYAGIHYMEPESSLDACQDKIDALFFHQPPSGNAGQLFTSGQRKVTVWRREEIKVQHFPCVASYENVGSGSQKNGESSAVVSQAEKSDSTSRIEVSWKTAGVCVRDTAPFTTIRPVNNSIICCSSNGSIREWSVAHEVKNTRFLAQMWEHNGFITDVVFTEPSVG-----FCKAHSAPQHSCYMYSVSDDRYLKVWDLANKECLHTVKPRVSDCGTLQSVTKSDFHLYVGSSIGRVIVFALGRVCQRPEKHRCHLHVEPQW-FCEQESFELGKDPVQHMVCGGAGGRYKYLFTGARDGTIQVWNVP-KASFGHTKVCTFREHKR--AITALSLTKAHLFSASDEGHVRVWSLGTLCLQRVVRQDWRIKCIW 654
            D EF    P   + P    L    +Y+ ++ +A+ A     W RE  +M    + +        +      +++C      L F+       G+L+T+G ++V VW  E      + C+A                                         VR+TA    I+ VN +++ C+SNGSIR+WS+ H  KN  ++A  WEH  +I D + +EP        FC+         ++YSVSDDR +KVWD   K CL ++ P    CGT++SV +S  HLYVGSS G + V+ L R C R ++H C +       FC Q   + GK  +  + CGG   + K+L++ + DGT +VW++P K+ + H  +     H    A++    T AHLF+A  +  +RVW+L T+ LQ+V+  +   KC++
Sbjct:  147 DPEFGWAEPQKVMNPAAEVLDFVFQYVGAKELAKVATVDRLW-RERIDMQTHFIDMKQLANDYEHQVHSGRVESC------LEFN-------GRLYTAGDKRVKVWNLET-----YECLAE---------------------------------------AVRETAVINDIQVVNGALLVCASNGSIRQWSLTHNPKNIAYVAAYWEHRSWINDFIPSEPEPDDDGEMFCR---------FLYSVSDDRTVKVWDANKKVCLFSMDPPNRTCGTMRSVARSARHLYVGSSNGVIYVYPLKRECDREDRHGCSISEHGALPFCLQTELQHGKGIILQLECGGYRRQVKHLYSASTDGTFRVWSLPGKSGYEHECLRVIDAHAPGGALSCFCTTWAHLFTAGQDKVIRVWNLHTMELQKVLHPEELCKCMY 508          
BLAST of mRNA_C-linearis_contig79.15398.1 vs. uniprot
Match: A0A7S2H458_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H458_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 6.340e-19
Identity = 73/314 (23.25%), Postives = 131/314 (41.72%), Query Frame = 0
Query:  258 LEYMDSRTVARCARASSEWHRECYEMNEEGLPVHPTYAGIHYMEPESSLDACQDKIDALFFHQPPSGNAGQLFTSGQRKVTVWRREEIKVQHFPCVASYENVGSGSQKNGESSAVVSQAEKSDSTSRIEVSWKTAGVCVRDTAPFTTIRPVNNSIICCSSNGSIREWSVAHEVKNTRFLAQMWEHNGFITDVVFTEPSVGFCKAHSAPQHSCYMYSVSDDRYLKVWDLANKECLHTVKPRVSDCGTLQSVTKSDFHLYVGSSIGRVIVFALGRV-CQRPEKHRCHLHVEPQWFCEQESFELGKDP-VQHMVCGG 569
            + Y++ R++ R +  S  +  E          V P Y  +     E    A + ++  +  ++      G+ +T G + V VW+ +    +                              S+   R+E+        V D  P T  + ++ +++  SSNG++R W++ H +K     A MWEHN  + D            +H        +++ SDDR +K WDL    C HT++P      T++SV  SD  L+VG S G + V+      C R ++H C+  + P+ +C Q++ +  +   V  +V GG
Sbjct:    1 MPYLNPRSLGRASSVSVVFWSEA--------AVQPHYDDMKRFGVEMKFTAHEKRVKGVVSYR------GRCYTGGDKCVKVWKLQRASAE------------------------------SEEFDRVELIHT-----VHDLCPVTFCQEIDGNLLVGSSNGAVRMWTMPHSIKKMNQRAVMWEHNALVHDA-----------SHWQRGKFSTLFTASDDRTIKAWDLHQVRCEHTLEPLDRRGATMRSVAVSDSFLFVGHSRGVIYVYLTDTSSCLREDRHECY--ISPRPYCLQKTLQDTEGQIVSSIVVGG 252          
BLAST of mRNA_C-linearis_contig79.15398.1 vs. uniprot
Match: A0A835Z1Z8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1Z8_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 8.210e-6
Identity = 39/113 (34.51%), Postives = 55/113 (48.67%), Query Frame = 0
Query:  583 DGTIQVWNVPKASFGHTKVCT-----FREHKRAITALSLTKAHLFSASDEGHVRVWSLGTLCLQRVVRQDWRIKCIWVHHAPPDSP-----------DAGTGSLFLGLATGLV 679
            DG++ VW  P+  FGH                AIT +++  AH+ SA D G VR++S GTL LQRV+R   R+K + +      +            D G G L+LGL+ G V
Sbjct:    3 DGSLWVWAAPRRRFGHRGRALRSGGXXXXXGAAITHIAVGNAHVLSADDAGEVRIYSAGTLRLQRVLRAGARVKSVCLRQPAAAATAXXXXXXXRGGDDG-GRLYLGLSDGTV 114          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig79.15398.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LMJ5_ECTSI7.520e-21459.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6U4D539_9STRA5.890e-5129.60Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2H458_9STRA6.340e-1923.25Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A835Z1Z8_9STRA8.210e-634.51Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 107..128
NoneNo IPR availablePANTHERPTHR44489FAMILY NOT NAMEDcoord: 575..638
coord: 62..638
NoneNo IPR availablePANTHERPTHR44489:SF1WD REPEAT DOMAIN 86coord: 62..638
NoneNo IPR availablePANTHERPTHR44489:SF1WD REPEAT DOMAIN 86coord: 575..638
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 597..634
e-value: 0.0047
score: 26.1
coord: 388..425
e-value: 110.0
score: 4.1
coord: 550..590
e-value: 6.1
score: 12.1
coord: 432..484
e-value: 0.5
score: 18.9
IPR001680WD40 repeatPFAMPF00400WD40coord: 601..634
e-value: 0.078
score: 13.9
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 576..599
score: 8.871
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 604..635
score: 9.339
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 470..493
score: 8.537
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 550..679
e-value: 1.0E-12
score: 49.3
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 295..549
e-value: 8.5E-14
score: 53.1
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 577..591
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 471..485
IPR001876Zinc finger, RanBP2-typePROSITEPS01358ZF_RANBP2_1coord: 8..27
IPR001876Zinc finger, RanBP2-typePROSITEPS50199ZF_RANBP2_2coord: 4..33
score: 8.242
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 576..643
score: 12.262
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 409..657

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig79contigC-linearis_contig79:236503..247282 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig79.15398.1mRNA_C-linearis_contig79.15398.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig79 236503..247282 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig79.15398.1 ID=prot_C-linearis_contig79.15398.1|Name=mRNA_C-linearis_contig79.15398.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=689bp
MTAQEHRWKCKQCSHDNPDEEDFCDTCFAPRGASAAPRESCRTCGHRHSM
GKHCHIFVINKKRWKRKTAKWNKPRQPAGEEGTEETGSSSSEGSSDDDSS
EQGSSGKEEEEKEEEDDEEEENDSSENSSDSSGSEDEEGNPKRPKKGLLG
LGDRLAAKAAAIAKTAGKAMQAVTGGGRLRETPPYATASCFKRCNCGDGV
PMDSTAFVPLQDGRTLQHEAVGMVTVRTEPLEGADFEFENRPPLAQVPPP
PYALRLFLEYMDSRTVARCARASSEWHRECYEMNEEGLPVHPTYAGIHYM
EPESSLDACQDKIDALFFHQPPSGNAGQLFTSGQRKVTVWRREEIKVQHF
PCVASYENVGSGSQKNGESSAVVSQAEKSDSTSRIEVSWKTAGVCVRDTA
PFTTIRPVNNSIICCSSNGSIREWSVAHEVKNTRFLAQMWEHNGFITDVV
FTEPSVGFCKAHSAPQHSCYMYSVSDDRYLKVWDLANKECLHTVKPRVSD
CGTLQSVTKSDFHLYVGSSIGRVIVFALGRVCQRPEKHRCHLHVEPQWFC
EQESFELGKDPVQHMVCGGAGGRYKYLFTGARDGTIQVWNVPKASFGHTK
VCTFREHKRAITALSLTKAHLFSASDEGHVRVWSLGTLCLQRVVRQDWRI
KCIWVHHAPPDSPDAGTGSLFLGLATGLVLSYPITDAV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR019775WD40_repeat_CS
IPR001876Znf_RanBP2
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf