mRNA_C-linearis_contig79.15398.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig79.15398.1 vs. uniprot
Match: D8LMJ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMJ5_ECTSI) HSP 1 Score: 618 bits (1593), Expect = 7.520e-214 Identity = 326/551 (59.17%), Postives = 367/551 (66.61%), Query Frame = 1
Query: 412 EGNPKRPKKGLLGLGDRLAAKAAAIAKTAGKAMQAVTGGGRLRETPPYATASCFKRCNCGDGVPMDSTAFVPLQDGRTLQHEAVGMVTVRTEPLEGADFEFENRPPLAQVPPPPYALRLFLEYMDSRTVARCARASSEWHRECYEMNEEGLPVHPTYAGIHYMEPESSLDACQDKIDALFFHQPPSGNAGQLFTSGQRKVTVWRREEIKVQHFPCVASYENVGSGSQKNGESSAVVSQAEKSDSTSRIEVSWKTAGVCVRDTAPFTTIRPVNNSIICCSSNGSIREWSVAHEVKNTRFLAQMWEHNGFITDVVFTEPSVGFCKAHSAPQHSCYMYSVSDDRYLKVWDLANKECLHTVKPRVSDCGTLQSVTKSDFHLYVGSSIGRVIVFALGRVCQRPEKHRCHLHVEPQWFCEQESFELGKDPVQHMVCGGAGGRYKYLFTGARDGTIQVWNVPKASFGHTKVCTFREHKRAITALSLTKAHLFSASDEGHVRVWSLGTLCLQRVVRQDWRIKCIWVHHAPPDSPDAGTGSLFLGLATGLVLSYPITDAV 2064
+G PK+PKKGLLGLGDRLAA+AAAIAKTAG A+QAVTG GR RETPP+A A+CF+RCNC GVP DSTAFVPLQ+GR L+HEAVG+VTVRTEPLEGA+ EFENRPPL + PPPPY LRLFLEYMDSRTVARCA S EWHRECY+ NEEG+P+HP Y G+H+ME S +DACQDKID +FFHQPP+G+ GQLFT+GQR+VT WRR+E +V S + GSGS K+GESS + D+ RIEVSW++AGVC+RDTAPFT I PVN+ + ++A NT W+ FT PSVGFCKAH APQHSCYMYSVSDDRYLKVWDLA K+CLHTVKP++SDCGT VWNVPKASFGHTKVCTFREHKRAITALSLTKAHLFSASDEGHV VRQD RIKCIWVHHAPPDSPD G GSLFLGLATGLVL+YPITDAV
Sbjct: 96 DGTPKKPKKGLLGLGDRLAARAAAIAKTAGNALQAVTGEGRRRETPPWARAACFRRCNCNHGVPTDSTAFVPLQEGRKLEHEAVGVVTVRTEPLEGAELEFENRPPLERTPPPPYVLRLFLEYMDSRTVARCAHTSKEWHRECYQRNEEGVPMHPAYIGMHFMELGSQVDACQDKIDGMFFHQPPTGSPGQLFTAGQRRVTAWRRQETEVD-TEREQSTASEGSGSTKSGESSET--SHSEGDAAPRIEVSWQSAGVCLRDTAPFTMILPVNSR--------PRKNPNMAFHSANTSSCFLAWQ--------AFTAPSVGFCKAHGAPQHSCYMYSVSDDRYLKVWDLATKDCLHTVKPKISDCGT------------------------------------------------------------------------------------VWNVPKASFGHTKVCTFREHKRAITALSLTKAHLFSASDEGHV-------------VRQDRRIKCIWVHHAPPDSPDPGNGSLFLGLATGLVLAYPITDAV 530
BLAST of mRNA_C-linearis_contig79.15398.1 vs. uniprot
Match: A0A6U4D539_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4D539_9STRA) HSP 1 Score: 195 bits (496), Expect = 5.890e-51 Identity = 127/429 (29.60%), Postives = 202/429 (47.09%), Query Frame = 1
Query: 703 DFEFENRPPLAQVPPPPYALRLFLEYMDSRTVARCARASSEWHRECYEMNEEGLPVHPTYAGIHYMEPESSLDACQDKIDALFFHQPPSGNAGQLFTSGQRKVTVWRREEIKVQHFPCVASYENVGSGSQKNGESSAVVSQAEKSDSTSRIEVSWKTAGVCVRDTAPFTTIRPVNNSIICCSSNGSIREWSVAHEVKNTRFLAQMWEHNGFITDVVFTEPSVG-----FCKAHSAPQHSCYMYSVSDDRYLKVWDLANKECLHTVKPRVSDCGTLQSVTKSDFHLYVGSSIGRVIVFALGRVCQRPEKHRCHLHVEPQW-FCEQESFELGKDPVQHMVCGGAGGRYKYLFTGARDGTIQVWNVP-KASFGHTKVCTFREHKR--AITALSLTKAHLFSASDEGHVRVWSLGTLCLQRVVRQDWRIKCIW 1962
D EF P + P L +Y+ ++ +A+ A W RE +M + + + +++C L F+ G+L+T+G ++V VW E + C+A VR+TA I+ VN +++ C+SNGSIR+WS+ H KN ++A WEH +I D + +EP FC+ ++YSVSDDR +KVWD K CL ++ P CGT++SV +S HLYVGSS G + V+ L R C R ++H C + FC Q + GK + + CGG + K+L++ + DGT +VW++P K+ + H + H A++ T AHLF+A + +RVW+L T+ LQ+V+ + KC++
Sbjct: 147 DPEFGWAEPQKVMNPAAEVLDFVFQYVGAKELAKVATVDRLW-RERIDMQTHFIDMKQLANDYEHQVHSGRVESC------LEFN-------GRLYTAGDKRVKVWNLET-----YECLAE---------------------------------------AVRETAVINDIQVVNGALLVCASNGSIRQWSLTHNPKNIAYVAAYWEHRSWINDFIPSEPEPDDDGEMFCR---------FLYSVSDDRTVKVWDANKKVCLFSMDPPNRTCGTMRSVARSARHLYVGSSNGVIYVYPLKRECDREDRHGCSISEHGALPFCLQTELQHGKGIILQLECGGYRRQVKHLYSASTDGTFRVWSLPGKSGYEHECLRVIDAHAPGGALSCFCTTWAHLFTAGQDKVIRVWNLHTMELQKVLHPEELCKCMY 508
BLAST of mRNA_C-linearis_contig79.15398.1 vs. uniprot
Match: A0A7S2H458_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H458_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 6.340e-19 Identity = 73/314 (23.25%), Postives = 131/314 (41.72%), Query Frame = 1
Query: 772 LEYMDSRTVARCARASSEWHRECYEMNEEGLPVHPTYAGIHYMEPESSLDACQDKIDALFFHQPPSGNAGQLFTSGQRKVTVWRREEIKVQHFPCVASYENVGSGSQKNGESSAVVSQAEKSDSTSRIEVSWKTAGVCVRDTAPFTTIRPVNNSIICCSSNGSIREWSVAHEVKNTRFLAQMWEHNGFITDVVFTEPSVGFCKAHSAPQHSCYMYSVSDDRYLKVWDLANKECLHTVKPRVSDCGTLQSVTKSDFHLYVGSSIGRVIVFALGRV-CQRPEKHRCHLHVEPQWFCEQESFELGKDP-VQHMVCGG 1707
+ Y++ R++ R + S + E V P Y + E A + ++ + ++ G+ +T G + V VW+ + + S+ R+E+ V D P T + ++ +++ SSNG++R W++ H +K A MWEHN + D +H +++ SDDR +K WDL C HT++P T++SV SD L+VG S G + V+ C R ++H C+ + P+ +C Q++ + + V +V GG
Sbjct: 1 MPYLNPRSLGRASSVSVVFWSEA--------AVQPHYDDMKRFGVEMKFTAHEKRVKGVVSYR------GRCYTGGDKCVKVWKLQRASAE------------------------------SEEFDRVELIHT-----VHDLCPVTFCQEIDGNLLVGSSNGAVRMWTMPHSIKKMNQRAVMWEHNALVHDA-----------SHWQRGKFSTLFTASDDRTIKAWDLHQVRCEHTLEPLDRRGATMRSVAVSDSFLFVGHSRGVIYVYLTDTSSCLREDRHECY--ISPRPYCLQKTLQDTEGQIVSSIVVGG 252
BLAST of mRNA_C-linearis_contig79.15398.1 vs. uniprot
Match: A0A835Z1Z8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1Z8_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 8.210e-6 Identity = 39/113 (34.51%), Postives = 55/113 (48.67%), Query Frame = 1
Query: 1747 DGTIQVWNVPKASFGHTKVCT-----FREHKRAITALSLTKAHLFSASDEGHVRVWSLGTLCLQRVVRQDWRIKCIWVHHAPPDSP-----------DAGTGSLFLGLATGLV 2037
DG++ VW P+ FGH AIT +++ AH+ SA D G VR++S GTL LQRV+R R+K + + + D G G L+LGL+ G V
Sbjct: 3 DGSLWVWAAPRRRFGHRGRALRSGGXXXXXGAAITHIAVGNAHVLSADDAGEVRIYSAGTLRLQRVLRAGARVKSVCLRQPAAAATAXXXXXXXRGGDDG-GRLYLGLSDGTV 114 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig79.15398.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig79.15398.1 >prot_C-linearis_contig79.15398.1 ID=prot_C-linearis_contig79.15398.1|Name=mRNA_C-linearis_contig79.15398.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=689bp MTAQEHRWKCKQCSHDNPDEEDFCDTCFAPRGASAAPRESCRTCGHRHSMback to top mRNA from alignment at C-linearis_contig79:236503..247282- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig79.15398.1 ID=mRNA_C-linearis_contig79.15398.1|Name=mRNA_C-linearis_contig79.15398.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=10780bp|location=Sequence derived from alignment at C-linearis_contig79:236503..247282- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig79:236503..247282- >mRNA_C-linearis_contig79.15398.1 ID=mRNA_C-linearis_contig79.15398.1|Name=mRNA_C-linearis_contig79.15398.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=4134bp|location=Sequence derived from alignment at C-linearis_contig79:236503..247282- (Chordaria linearis ClinC8C monoicous)back to top |