prot_C-linearis_contig79.15395.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig79.15395.1
Unique Nameprot_C-linearis_contig79.15395.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length563
Homology
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BLAST of mRNA_C-linearis_contig79.15395.1 vs. uniprot
Match: A0A6H5K945_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K945_9PHAE)

HSP 1 Score: 282 bits (721), Expect = 4.160e-84
Identity = 252/583 (43.22%), Postives = 308/583 (52.83%), Query Frame = 0 
Query:    8 ILSAYSTHQCWAFAVSAFRAGLASS-DDALTRDASRPRWSCCGNAPGGRHLPHQRRPRSFLCAAAEEGGGEAEGGDDV----GDGNGVVAGXXXXXXLGGEWQVKSGEGRKTRPG---EGVGAVPGQLPEKTQDGQSWAEWAREWREDPQGKADRLVGQWEAESK--ETGGFQVGQPRRKRXXXXXXXXXXGSAGPSRGVVGSGFGGAARPTKSVPKGLVVAETGAGTGGVVDWSTGQPLAETDRRENMAADWQQDAQHLESLDPSDREKLAEKLRMALGKKPQKTKKKA-----PSSDG--RGF---AGDPGGKRTRKGGXXXXGRGVLASATAAAGAVVADGVAGVSIFPPAQAEGEAPAAVAGQSGGESVPPGVAPAQGDSKGGVGPPAPDVAPPPPLQGESKGGEDVVLGGGANVGDGIETAASTS--VQIPADAGTAVEEGGTAPSNAKTASPG-DEIRRNGGGFPHERVMSFGKGVAVVEASGGSSS-EEPSRHEVVGATEGLAESSAGVSVDGDKLSNALSFGRGVAIPTEVVVK---DGVEEGSVVAEESVAA---DDARLSEFGTGVAFPVESD 560
            +LSA + H+C AF       G+ S   D  +  AS     C GN+   RH   QRR RS L  AAE  GG+   GD+     GD N    G      L GEWQVKSGEG++ R G   +G G+VPGQLPEKT+DGQ WAEWAREWREDP+GKADRLV QW+AE+K  E GG Q G+ ++++          G AGPSRGVVGSGFGG  R TKSVPKGLVV+ET                             QQDA++LESLDPSDREKLAE+LR ALGKK             PS  G  +GF   A   GG           GRGVLASA AAAGAV A+ VAGVS+FP A           G  G   V        G+SKG  G     V+     +G  K  E +++  GA    G +T A  S  VQ+   AG AVE G +     + ASPG D I + G G P E+VM  G GVAVVEA+    +  +      VG+T   A  S+    D  +LS ALSFG+G+++P+E       DG  +  V A E+  +   DD  L  FG GVAFP ++D
Sbjct:   18 LLSACTKHRCLAFVSPRLAPGVLSPWYDVPSAVASPSSLLCRGNSFPTRH---QRRQRSLLRTAAE--GGDGGAGDNXXXXXGDAN-AKTGTGASMGLDGEWQVKSGEGKRARRGAGSDGFGSVPGQLPEKTRDGQDWAEWAREWREDPEGKADRLVSQWDAEAKANEGGGLQDGRSKKRKAKKNKK----GKAGPSRGVVGSGFGGPVRQTKSVPKGLVVSETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQDAKNLESLDPSDREKLAEQLRTALGKKKXXXXXXXXXXXXPSDRGESKGFSTTAIPTGGTDASAIKGRGDGRGVLASAAAAAGAVAAEDVAGVSVFPSAAEGSNGAMEQLGSDGEYEV--------GESKGAEGK---SVSAGVGAEGRGKD-EPLLVEAGAEGDPGKKTVADGSGGVQVLPVAGAAVEGGDSPVGGQQLASPGADGIEKIGDGVPLEKVMGIGTGVAVVEAATNDGACSDAGGVSAVGSTGESARDSS----DEGELSRALSFGKGISLPSEEDAAEGDDGEMKKPVAASETPGSGGEDDRLLRSFGRGVAFPAKAD 574
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig79.15395.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K945_9PHAE4.160e-8443.22Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..562
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 12..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..11
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..19
score: 0.475

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig79contigC-linearis_contig79:206980..212418 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig79.15395.1mRNA_C-linearis_contig79.15395.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig79 206888..213190 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig79.15395.1 ID=prot_C-linearis_contig79.15395.1|Name=mRNA_C-linearis_contig79.15395.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=563bp
MKNSLVIILSAYSTHQCWAFAVSAFRAGLASSDDALTRDASRPRWSCCGN
APGGRHLPHQRRPRSFLCAAAEEGGGEAEGGDDVGDGNGVVAGAGAGMGL
GGEWQVKSGEGRKTRPGEGVGAVPGQLPEKTQDGQSWAEWAREWREDPQG
KADRLVGQWEAESKETGGFQVGQPRRKRNSKKKKKKKKGSAGPSRGVVGS
GFGGAARPTKSVPKGLVVAETGAGTGGVVDWSTGQPLAETDRRENMAADW
QQDAQHLESLDPSDREKLAEKLRMALGKKPQKTKKKAPSSDGRGFAGDPG
GKRTRKGGGGGDGRGVLASATAAAGAVVADGVAGVSIFPPAQAEGEAPAA
VAGQSGGESVPPGVAPAQGDSKGGVGPPAPDVAPPPPLQGESKGGEDVVL
GGGANVGDGIETAASTSVQIPADAGTAVEEGGTAPSNAKTASPGDEIRRN
GGGFPHERVMSFGKGVAVVEASGGSSSEEPSRHEVVGATEGLAESSAGVS
VDGDKLSNALSFGRGVAIPTEVVVKDGVEEGSVVAEESVAADDARLSEFG
TGVAFPVESDKR*
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