prot_C-linearis_contig78.15378.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig78.15378.1
Unique Nameprot_C-linearis_contig78.15378.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length76
Homology
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BLAST of mRNA_C-linearis_contig78.15378.1 vs. uniprot
Match: A0A6H5JP22_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP22_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 3.730e-7
Identity = 27/63 (42.86%), Postives = 35/63 (55.56%), Query Frame = 0 
Query:   18 CGCELADGTNPCDEDVACTPGADGYTCGVNQCLDLTS--------DASQCSVDQDGVMELGHC 72
            CGCEL+DGT+PC +D+AC+PG +GYTCG      L          +A  CS    G  + G C
Sbjct:  351 CGCELSDGTSPCGQDLACSPGPEGYTCGNTSLASLAPTPSPAPVMEAQTCSNGLAGYEKSGAC 413
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BLAST of mRNA_C-linearis_contig78.15378.1 vs. uniprot
Match: D7FY01_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY01_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 1.170e-5
Identity = 19/27 (70.37%), Postives = 24/27 (88.89%), Query Frame = 0 
Query:   18 CGCELADGTNPCDEDVACTPGADGYTC 44
            CGCEL+DGT+PC +D AC+PG +GYTC
Sbjct:  351 CGCELSDGTSPCGQDPACSPGPEGYTC 377
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig78.15378.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JP22_9PHAE3.730e-742.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FY01_ECTSI1.170e-570.37Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig78contigC-linearis_contig78:863527..872528 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig78.15378.1mRNA_C-linearis_contig78.15378.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig78 863527..872528 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig78.15378.1 ID=prot_C-linearis_contig78.15378.1|Name=mRNA_C-linearis_contig78.15378.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=76bp
PRVPSPLRYADDSVGTECGCELADGTNPCDEDVACTPGADGYTCGVNQCL
DLTSDASQCSVDQDGVMELGHCIITD
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