mRNA_C-linearis_contig78.15378.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig78.15378.1
Unique NamemRNA_C-linearis_contig78.15378.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig78.15378.1 vs. uniprot
Match: A0A6H5JP22_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP22_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 3.730e-7
Identity = 27/63 (42.86%), Postives = 35/63 (55.56%), Query Frame = 1 
Query:   52 CGCELADGTNPCDEDVACTPGADGYTCGVNQCLDLTS--------DASQCSVDQDGVMELGHC 216
            CGCEL+DGT+PC +D+AC+PG +GYTCG      L          +A  CS    G  + G C
Sbjct:  351 CGCELSDGTSPCGQDLACSPGPEGYTCGNTSLASLAPTPSPAPVMEAQTCSNGLAGYEKSGAC 413
[Close]
BLAST of mRNA_C-linearis_contig78.15378.1 vs. uniprot
Match: D7FY01_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY01_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 1.170e-5
Identity = 19/27 (70.37%), Postives = 24/27 (88.89%), Query Frame = 1 
Query:   52 CGCELADGTNPCDEDVACTPGADGYTC 132
            CGCEL+DGT+PC +D AC+PG +GYTC
Sbjct:  351 CGCELSDGTSPCGQDPACSPGPEGYTC 377
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig78.15378.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JP22_9PHAE3.730e-742.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FY01_ECTSI1.170e-570.37Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig78contigC-linearis_contig78:863527..872528 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size228
Cds size228
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig78.15378.1prot_C-linearis_contig78.15378.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig78 863527..872528 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930486.2568662-CDS-C-linearis_contig78:863526..8635491622930486.2568662-CDS-C-linearis_contig78:863526..863549Chordaria linearis ClinC8C monoicousCDSC-linearis_contig78 863527..863549 +
1690881094.583484-CDS-C-linearis_contig78:863526..8635491690881094.583484-CDS-C-linearis_contig78:863526..863549Chordaria linearis ClinC8C monoicousCDSC-linearis_contig78 863527..863549 +
1622930486.275232-CDS-C-linearis_contig78:864065..8640971622930486.275232-CDS-C-linearis_contig78:864065..864097Chordaria linearis ClinC8C monoicousCDSC-linearis_contig78 864066..864097 +
1690881094.59781-CDS-C-linearis_contig78:864065..8640971690881094.59781-CDS-C-linearis_contig78:864065..864097Chordaria linearis ClinC8C monoicousCDSC-linearis_contig78 864066..864097 +
1622930486.2890334-CDS-C-linearis_contig78:864434..8645151622930486.2890334-CDS-C-linearis_contig78:864434..864515Chordaria linearis ClinC8C monoicousCDSC-linearis_contig78 864435..864515 +
1690881094.6077678-CDS-C-linearis_contig78:864434..8645151690881094.6077678-CDS-C-linearis_contig78:864434..864515Chordaria linearis ClinC8C monoicousCDSC-linearis_contig78 864435..864515 +
1622930486.302307-CDS-C-linearis_contig78:872090..8721541622930486.302307-CDS-C-linearis_contig78:872090..872154Chordaria linearis ClinC8C monoicousCDSC-linearis_contig78 872091..872154 +
1690881094.6222584-CDS-C-linearis_contig78:872090..8721541690881094.6222584-CDS-C-linearis_contig78:872090..872154Chordaria linearis ClinC8C monoicousCDSC-linearis_contig78 872091..872154 +
1622930486.3151915-CDS-C-linearis_contig78:872500..8725281622930486.3151915-CDS-C-linearis_contig78:872500..872528Chordaria linearis ClinC8C monoicousCDSC-linearis_contig78 872501..872528 +
1690881094.6323822-CDS-C-linearis_contig78:872500..8725281690881094.6323822-CDS-C-linearis_contig78:872500..872528Chordaria linearis ClinC8C monoicousCDSC-linearis_contig78 872501..872528 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig78.15378.1

>prot_C-linearis_contig78.15378.1 ID=prot_C-linearis_contig78.15378.1|Name=mRNA_C-linearis_contig78.15378.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=76bp
PRVPSPLRYADDSVGTECGCELADGTNPCDEDVACTPGADGYTCGVNQCL
DLTSDASQCSVDQDGVMELGHCIITD
back to top

mRNA from alignment at C-linearis_contig78:863527..872528+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig78.15378.1 ID=mRNA_C-linearis_contig78.15378.1|Name=mRNA_C-linearis_contig78.15378.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=9002bp|location=Sequence derived from alignment at C-linearis_contig78:863527..872528+ (Chordaria linearis ClinC8C monoicous)
CCGCGCGTGCCGTCACCTTTAAGGTAGCTAGCTCGAAGATAGCAAGAAGA
TTAGCCGTAGGACGACATGTTGCCGTCAAACTACATTCGGTTATTCGAAG
GGTGTCGTGGACTCCGGTATTCTAGAGCGCACCCGTCCTTGTTTGTCTGC
TCCAATTGATATCCACATAGATCAACCTCGACCTTGTCGCGTGGCAGACA
CTTTGACGCTCGACAGTTGACAGGGATTTTCCGCCGAGATTGCAGTGCAA
TAAATGGCTGTTGGCGCTTTAGCTTTTGTAACAAACGCCTCATCGGGCAC
GGTTTGCAGCAGCTTACAGACGGGCTTAATGAAGGCTCTGTAACGTGCCT
TTTAACAGGTTTAATCCCCAACATCTTCTTTTCCCTGCCGCAGCCATGGC
ACTGCCGCCCACCAGAACTAACAGTCTACCTTACCTGCCTGCGAAGGCTG
ATGTGCCACCAGCGGTTGGACATTCATTCGTTCGTTTCCTGCCCATCCTC
CTCGCCTCTTTACCCCCATGCGTACATAATTCTTGGCAGGTATGCCGACG
ACTCAGTCGGCACGGAATGTGGTGAGTATCGTTCTCTGCAAGTCTCGCAG
AACACTCCACCCTGAAACTTGAGATGCGCACTTCGAAGTATGTATTGTAT
AGACCACGCATTTTGGCGTTATTTTTTTTCTGTGGCCCATCATGTATGTG
TGTGTCACGTGCATGCGTATTTCCATTTCTGTGTCTGATTCTGAAGCTAC
GCATTTGCCGAAAGACTTCATTGTGGGCTTTCATCGCCAGAAACCCACCC
GAGGGTCACGAGGATAGCTGATGATGCTTGTTTGGGCGCACTCCCACAGA
TAGAGTAATTTCTTCTAAGCAACATACACTCAACAACGATGTGTATGCCT
GCCTGCAGGGTGCGAGCTCGCAGACGGAACCAACCCGTGTGACGAAGACG
TGGCATGCACCCCTGGAGCCGACGGGTACACCTGCGGCGGTAAGAGAGTC
GAAAAATGTGATTCGCTTGCCGTGAATTGTGCGAATATCGGCGATGGTCA
CGGAAAGTGGCGCCAGCACCTGTTGAACGTCTTGGGCGAGCCTTCCCTAT
GCCGAAAATCATTGTTACACGGCACACCCAAAAAGGGGAATGCTACATAC
GGTGAGTTCGCCTCGAAATCAAAGCAAATCCGATATGATTGGCCCACCAG
GTTCGACTGGGCGGTGGGGCCGGAGTTCGATATGATTGGCCCCCCCGCTC
CGACTGGGCGGTGGGGCCGGAAGGCTTTTGATATGAAGCAAAGTTGTAGC
GGCAGGGTTGGTTGCGGGCCAAATGCAGTCGCTGAAGCGTGGTGGTATTG
GTTGACAGTACGGATTTAATGTTATATTAAAGATTTAACGTGTAGGTATC
TTGCATGCAAATCTGCAAACCCTCCCGCATGACTGCTGTTGCCGCCCGAG
ACACGCGCAGAAGGTACAAAGCATACATACCTGAAGGGGAAGGGTGAAAT
GATGTATCCCTTGGAGAAAAATCTCAATCTACCTGTGAAAACAATAAAAG
ATAGATGATGCATACTCGAAAGTATATCAGATTTATTTCGTCATGGTGTG
GGAATCGCGTCCGGAACGATGACGTACAACTCCATGGAAATGTGCCAATA
AAACGGAGTAAAACCCTAAAATAATGCCGCCACATTTAAACATAATAGCA
TATTAGTCTAGGCAGCACAAATCGACATTAGGAAAGCACGTAACCGCCAA
GCACCGATGAATACGAACATGCGGAATCCTTCCACCTAATGCATGCAAAA
TTAGATGGCAAGTATGAGAATATGAAATATCGACTAACAGCAAAGTAGAA
AGTGCCGATGAAACCTACGACGTGTTTGCCCATCCTGGATCAAAATAAAA
CCTGCAACAATGAAATGTACAACGCAAGCTCGAAGCAAGATGAAGTGATA
AAACTCGTGTTTTACATGAAAAAAGTATTATCAGCCAGCCTCGAGGCGAT
CCACGTTCCCCCGCGAACGCTGTGCGTCTGTAAAGGTGCGCTTCTGTTGC
CGGTTATCGGTCTCATGGCGGAGTGTGTGGTATGTACGTGTGCTGTAGAG
TGACAACGACGATTCCGTGACGGGGTAGTATCAATTTAGTTCATTATTAT
TTTAATAGAATGTTCCGTGGGTCATGTTTGACTCGTGGAAAGAGGGGTGC
CCTGGTTGTTGTGTAGTTTGTACATCATCATCGCACTGTCCAAACAACGT
CACTATTTCTGATTGTTGGGATACGGGACCCATTTGTGCACCAGCAACTG
CTGTGGACCCGCAGTAGTTGAGGATGTCGTGTCTTTGGCGGTGGCCACAG
CGAGCGGTAGACGATGTTTGCCGTCTGTCCAGATTTATATGTGGGCCTTT
CACCTACTGTTGCGGTGCTCGAAAACTCCTCGCTTGCAGCAGAGATACAA
GCATTGCATGCAAACACGCACCACATCTTTCTCCATAACGTCCTCCACTG
ACGACATCGCCTGTGAAGGTGCAGGAAATTTATTTTTGTTGTAGGCAGAT
TATATGTAGACAGATCCAATCCAATTCAACTCAACGTCCACTATTATTAT
AGTCGTTCAATAGATGTTCATCATAGACTATGTACCTAGTGTGATACGAT
AAACCTTTTTACCTGAAACAATATTGTTCAAACATGTACCACTACGAAGA
AGAGTGTTGGTAAGGTGAAATTTGCTAAAATACACATACATTTGGATCAA
CTAACATGTGAGTGTGCTACACATCTTTCGTAACTAGCGCCGAAAATATT
GTTTGTCATAATACGGTACAAAATATGACGAATAGTCTACTCTCCCCAAC
GCTTGCAACTGTTTGGATTCGATGCCCTATTGTGTATCGAAGCTCCACAC
CCAATTCTTTGATGTCGACTTATTCGATGCCCGAGTCGTTCTCTGTCCTT
CACTTTCTTGGCACCCCCTTAGTGAGAGCTTGTACCGGCGGTGTACTCTT
CTCCGCATGGCTACCTGGATAGCCACTGATACAACCTGAAGAAGTCGCCT
TTGTACGCGCCCTAAATGGTCATGGATTCTCCACTCTTCCCCCCTTGCGG
CGTGTATCGCTAGCTCGTTGACGAACTCGCATCCCTCCTCCTCGAGACGG
CCAAAGCTCTCCACCGCTAAAGTGTTCAGTTCAAAGCTGCGCTCGTCGAA
GGACACGTATCTTGGACGCGAGCGTAGTGCTAACGCTTTCGCGCCTCGGA
GGCTTGGGCGGCGGTTCCATCGCAGGTTGCGCTACCATTCCGCAAGCGTA
CCTGTGCTTGCGGTTCTGCGTGGGTAACGTCCAGGAGTATGCCCTGGTTG
CGGTACTCCGAAGACGGCGCGTTTGCGAGTGCTCCAGGTCTGATCACGAT
GTCCATGGTCAGGTTCCGTTTCCCGGTGAAAGGTGCTCCGCTCTCCACGT
CGTTTCTAACCCCCATGCTGTTGAGTACCTTCGATAAAGCTAACTTCAAC
CGCTCGTGCATGTTAACCTGTGCCCCATCCCGGTGGCGGGTCCGTGCATG
CAGTGTTGTGTTCACCTCATTTTTCCTGTCTCTATAGCATCTGAGGCATC
CTGACGCCAATAATTCTTCAACTCCCAAGGCACGTCGCAAGGCGCAGGCG
AGTTCATTGGAGCCTAGTTCTCGAGCTCTGTCGGTGGGAGCCGCTTTATA
CTATGCATGGGCTCCTTTGCCTTGGCTGCTCCTCACCCTTGCACCGGCCA
TTTCTTAAGGCTCTCTCCCTCGAAAAGGGCCTCTTTGTGTTGGTGGTACC
GCCTCCGGAGGTAGTTGCCCCCGGGATTCCATGAACCGGTCCAGTTGAAC
CTTGTTGATGGCCTTGCCCAGTTTGTGTTGGGCTTTCCTCGGCGCAGTGG
ATTCGCCACCACGCGCTGCTAGTTCCGCCACCGTGGCTTGACGATTCCCG
TTTTCTCCCGATCGGTCTAAAGCCCACGCCACCCATGAAGGGGGATCAGT
CCCTTCAAAACCTCTTCCGACAGTCCATGCTTCTTGTGAAGTTCCTTAAT
CGCATCTCCCATCGTTGCGACCAAGAACTTTCCGGCAGTTTTTCTTTCAC
CGCTTCTCCGAGAGAACCGCTCAGCGTGGCCATAACCGCGGGTACGGTGC
TTATGAGATTGCTTAGAGAAGTTCAAAACCGTCGCATGACCGCCGATGGT
AGTCCCAGCCCTCGTGCTCTCGTGGAGAGACGCGCTTGCGCTTGCTGATA
GGGTCGTAGCTTGGAGTTCGTAGGCTGACAACTTTCTTGGAAGAAGTTTT
CGTCATCTTCTGTGTCTGTCAGCCCCGTCTTCGCCTCGAATACCGTATCA
TCCAATATTTAGCACGCGTGATTTGTGACTTCGGAATCGACTCCCCTCTT
GAGGCAAACGGACTGCGGAGTTAGACACAAAGAGGTGATCAGAAAAGCCA
CTTGTTTGTCTGACATGCGAGGTAGCATGCGAGCGAGCTTTTCCGCCCCC
CTGTCTGTAATGACCTTCATGGCACATTCCTTCACGTAGGCATCTGATCC
GATCTGGACACCGACCACTGTAATGCCCTGTTCCGCAACCGTGCGACCGG
TTCCATCCAGAAGCCTCTTTTGTTCATCTGTTATCTCGTGTCCCTGGGGA
AGGAGAGCCGATATTTTCTTTCTGCTGACGATTATGCCCACTTCTGCGAG
CTCGTCTTCGAAGTCCGACAAAGCCTGGAGCGCTTCTTCGGTGACGTGTT
AGAGGTGTAGGTTGATGTCGTTCATACTTCGTAGTATAAGCTTTAATACT
CACCCCTACCGGTGCATACTTTTGCTGGAGCTTGATGATGATGGGGACCA
GGATGAGCCACAACAGTGGCGGTCCCATCCCATCTCCTTGCTGCACCCCA
CCCCTGCACTCGAACGTCCTACGCTCTCCGGAATCCATCTCGTATACCGC
TTTGGCCGGAATCTCGTCGTAGCACCGTGCTATGTATCCGACGAGATCAG
GAATGCTCTTGGCAGCTTGGACCATAACGGCCGTGCGCTTGCCTGTACTG
AAAACATTGGAGCTGTCTATCTGGAATACCTAATTCCCTGTCGGGTGCAC
GAGTTGTGCCTCCATTGCAACTCCCTCGATCTCTCCTGCCACCGCTACTC
CGAATTGGTTGGCTTCACGAAAACAAATTCTAGCTTCGGTTTCTCCTCCC
TGACCGTCCCCGCTGCGATCAACCTCCTCTAGCTCATTCCAATGCACACC
GGACGGCATTTTTTGCCAAGGGCTATGAGGCTTGACTGTTTCCAGAGGGT
CCAAAACTCCGGCGTGAAGGTGTTGGGATCATTGATGGGTCTCCTCCACA
GGGAGAACATTGCATCGCTAAAGTCTTCTCGTCCTACTCGTGTGTTTATG
ATGGACTTGAGGTGGGAAAAACGTAACCCGTCGTGGCTTCTGCGACAGCT
TTCTCCACTGCTGCGGGATTCTCGTCAGGAAATTTGGCCTTGAGGCGTTC
CCATGTCTCGTCATTCCCAGGATAACGTGGCTCCGCTAGAAGGGCTTTGG
CTGCGTCCTTTACCATTCCCAAATGGTGCCTGCTTTGGTATAGTCTATCA
ACCAAAGCAGAAGGGAGTATATTTGACCTCTTTTTAGTGCCTTGTAGCGC
TGTTTGCGGGTTACTCGACCGTCGAAGGAATGCAAAAGACCCGGTAGAGG
GTACCAGAGCTTGATGGCTCTGAGAGTGGAACGCGGAGTCTGCGATTGTG
AGGATGAGCCACTGCTCTCTGCCAACTGCCTGTTGACCAGCTGGAGCACG
TGGGTTTGGAGTCGGGCATGTTCGGCGGCTTGCCGAGGGCGACCTTTCTT
CGTTGTTCGGAACGTCAATGTGCGTACTTCCATACGGACGTCATCCAACG
CAGTCCAAACTCCCAGGCTATCCTTGTTCCAGTCGAACAACGTTCTGACT
CCGCTCGGTGCATTTCGCAAACCAACTATCATTCGGTCGGCCCTGTACTG
CAGCCCCTGGTCAGCTTGAATCGCAGCTGTCAAGGTCTACCTCCGAAGGT
GTCTTGCCTCGCACCCGGCCACTCTACACCCAAGTAGGGCCCGCTCTCCT
CCGCGCTGCAGATTGGAGAGCACGCACCTGGCATGGACAACGTGGCCACA
AGGGAGATGGACGACACGGTGTCCTTCGATCACCAACCCCGAACATTCTC
TGCTGGTGGGATTCGAAACAGGAATGCCCCTAGTTGTCGTGTCTTCGCTC
GACCCGAGTCCACCGGAAGCTCCGAGCCCGTTAGGGTGTCTGCCTGTACC
CAAATTGGACCTGCTCCACCGCCCTGCCATCCTTTTTCCTCCCCGAGATG
GTGAAGCTGGAGGTCGCCCCCGTCCCCGAGGCCGCCCTGGCTGCGCAGGT
TCCGACGCGCGCTCCGGCTCACGCCCTATTCCCCCAAAGCGTCCTTGGGA
TGGTGCCGAGGAGGGTCTTCCGCCACTCCGAGCTCGTGTAGTCACCTCCT
GCCCGCTCGAATTGACACCTACTCCCGCTACTCCTTCGTCGTTGTTGTCA
GACGCCTGGCTTCGTCTCCCGGATCTCTCGCCGGGAGTATCGTCGGGGTT
CCTCCGGCTCATGGTTTGTGTGTTTTGTCGGCCACGGGAAGATATTGGGT
TGTTCTCCAGAGACGGCTCTTCGTCTTCCTCCACGGTCCACTTTCAAAGT
CGTACCCAGGGTTTACGCCTACCCCTGACACCCTGTGGTGGGTCGGTCTG
GCAGGTTCAACGTGGTGTTCATTCCAATCTTCGTGGCGTTGAGCAAACCG
ACCCGCTCTCGGGAATGGTGGCAGAAGCGTTCCGCTTTGGCCGAGAGTAC
GTTGTACAGCGGAGGTGTAGAGCGTAAGGTTCACTTCACACTCCGGGTCC
GGATGCGCCAAGTACTCCTGGGCATGAGGCGCAATTTATATCTTGCCTCG
GAGGAGCTCCAGAAGCACCTGACACGCGCGTATTCCGTCGGCATAAAAAG
CTGCTCGGTATCTCTGGACCATCTTTTCCCACCCGCTGTCTTCGCCGCGG
TCTCGAGGGAAACCCATGGAAACGCCTCGATCCACCCCAAACACGTCGCA
GAACAGAGGAACCAGGAGATGGGAACACGTCGGGCTCCTCCCGTTGCCTC
GCACTATTGCCTCACAGGAGTTGAATGCTCCAGCGTGGTCACCGCCCGCG
TCTGACAGGGAACAGCATTCAAAGTCGTTTTTCAAAACGGAAGCGAAAGT
CACCGTCGAAGCGAAAGTCACCGTCCCCCGCAGCTAGTCCCACCGGCCAT
CAGCATGCGACGGAGGACGGTTCCAGACCATTTCAGCGGGTTGTAGAGGT
CGTCGCTCGTGTGATCCTTCCCGCAAGCAAGGGTCACACGGGTGTGGATC
CACCCGTCCGAGGACCACATGACTGGCTCTATTGCACAGGCAGATAGCGT
GAACGGATGCGTTGTGCCCACAGGAGATGAAGACCGGCCAGCCCTTCGGC
ATGTGGAGGCGACCCGAATCAACGCCTACAGTAGGAGCAACAGCTTTGCT
AACAGGCCACCGGCGGTTGCTTGCGTGTCGGGCGGCGTGCATCAGGCACT
TTAACTCACCACTACACGACCGCAAATAGCTTACACCACCACAACGAAGC
ATGAGGGTGGCGCTGTTAGTGACATTTCTCTCTTTCCCGCTGACTGGTGG
ATGATATGAGCACGGTGGGCTTGAAAAGGTGTGCGTGTGTACATGCGCCA
TTTCAAAAGCGCGCAAAAAAAAGCGCCAGAAACATTTTTTCATGGCATTC
AGATTTCAAATAGATACGTACATGGTAGGATGGGTAGACGGCCATTCCCG
TCTGTATCCTACGCCGTACTCCGTATTAACATGACGCATTGTTTTGTCAC
AACGCGCAGCCAATGTCCAGTGCGTTGGGTGCACTGCACCTGAGAGAATC
AGAATGTTTGTGAGTTTTGCTGTCTGCTGCATGGCAATGCCAAGTGTCTG
GTTACTGTATTGAGAATAGCCTGGGTGAGCGGAGAGACCGAACGGCTCAG
GCGACATACCACGCGATCTCGTGTGGCTATCAACAGTGTTTCTCGGGCGG
AAGAGAGAGAGAAATACCACTTTTTAGTATTCGAAGCGCGCCATTTCTTG
GCGCGGCCTTTGGGTCCTTGGCCGCGCTCGATCGTTCTTGTTTTTAAAGT
TTTTCGTTTGCCCCCGACAATTGCAGAAAAATCGAATCAAAACTCGTTCG
CGTGAATGTTGGCAACAACAACTAACAACGCGCTGACGCAGAGCTCAAGC
AAAACAAGCGCGATGACGCAACATTGTTGCGCGGTCACCAACTTGTCGTC
AATCTGCTTTACCTCTTCAAGATACTTTGACTTCCTCGTCTACGTCGGTT
CCTTTCCACTAAATAAATAAATGTTGATCGCTTCACGCTTGTGCGCTTTG
TCCATCCGCAATGGCCACGACAACGCCGGCGTGGGTCATTCTCACTGCAC
CGTCTCACAACCGGCTCCCCCCTCGCATGCGTATCGTGTGTCGTGTGCTA
TTTGCTGCATGCAGTAAATCAGTGCTTGGACTTAACCAGTGACGCCAGTC
AATGCAGCGTCGATCAGGATGGAGTGATGTGAGAACGCAATTATAGGCGA
GCCGAAACATATATGCTGTAGTTTACACGTTGGGAATGACCGATGGCATG
GTGCACCTATTTCGTTCGTGTGACAGATTCAATCGAATGTCAAACAACGC
CAGCGGAACCTTTTGCTGGGGTTGTTGCCTCTCGATCATATTAGTCACTA
GTTGTTTGCCAACCTCCCAAAAACTCTAAGGGTCTTCAAGAATGTATGGG
GACTCCTAACCGAAAAGTGTACCGTAGCATCAGAGTTGTCACGTGCACGC
AACGGAATCGGAAATACCCCGCCAACCACAAGTAACATGGGAATATATGC
CTATTTCATTCACGCTCACTTTAGGGAATTGGGCCACTGCATCATAACCG
AC
back to top

Coding sequence (CDS) from alignment at C-linearis_contig78:863527..872528+

>mRNA_C-linearis_contig78.15378.1 ID=mRNA_C-linearis_contig78.15378.1|Name=mRNA_C-linearis_contig78.15378.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=456bp|location=Sequence derived from alignment at C-linearis_contig78:863527..872528+ (Chordaria linearis ClinC8C monoicous)
CCGCGCGTGCCGTCACCTTTAAGCCGCGCGTGCCGTCACCTTTAAGGTAT
GCCGACGACTCAGTCGGCACGGAATGTGGTATGCCGACGACTCAGTCGGC
ACGGAATGTGGGTGCGAGCTCGCAGACGGAACCAACCCGTGTGACGAAGA
CGTGGCATGCACCCCTGGAGCCGACGGGTACACCTGCGGCGGGTGCGAGC
TCGCAGACGGAACCAACCCGTGTGACGAAGACGTGGCATGCACCCCTGGA
GCCGACGGGTACACCTGCGGCGTAAATCAGTGCTTGGACTTAACCAGTGA
CGCCAGTCAATGCAGCGTCGATCAGGATGGAGTGATTAAATCAGTGCTTG
GACTTAACCAGTGACGCCAGTCAATGCAGCGTCGATCAGGATGGAGTGAT
GGAATTGGGCCACTGCATCATAACCGACGGAATTGGGCCACTGCATCATA
ACCGAC
back to top