prot_C-linearis_contig78.15376.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig78.15376.1
Unique Nameprot_C-linearis_contig78.15376.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length394
Homology
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BLAST of mRNA_C-linearis_contig78.15376.1 vs. uniprot
Match: A0A0C9YG32_9AGAM (Unplaced genomic scaffold scaffold_353, whole genome shotgun sequence n=1 Tax=Pisolithus microcarpus 441 TaxID=765257 RepID=A0A0C9YG32_9AGAM)

HSP 1 Score: 55.1 bits (131), Expect = 9.780e-5
Identity = 47/166 (28.31%), Postives = 77/166 (46.39%), Query Frame = 0 
Query:  108 PEEGVLPDGIAA--WTGLNSKSKNSTRQRKILLQKELTYRVLPGGQDPDVFFQEELFSLRNE---LKTMGRVVDDDEILGIILNGLPEEFSQVKLLAESQND-FDLDAAMETMRNMYGNRDAANGLSRIAK---GRSSAMTATASTTFCTYCKKEGHVEEQCFRKR 264
            P  GVL    AA  WT L  + +   +Q    L  EL      G    D   + +L S+R +   LK++G+ +DD  I   ++  LP  ++ ++++  S +D   +DA +  +     ++ A  G S + +   G+            CTYCKK GH+EE C RK+
Sbjct:  110 PLSGVLHATTAAQVWTKLCQRYEGKGKQTIAYLIGEL----FRGTLSDDSPMESQLNSMRQKAHILKSLGQPLDDSLIAIAMVISLPSSYATLRMILMSTDDKLSVDAVISQVLIEEKSQKATTGQSALTEKMSGQQRKAKDEKRKLKCTYCKKTGHIEEDCRRKK 271
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig78.15376.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0C9YG32_9AGAM9.780e-528.31Unplaced genomic scaffold scaffold_353, whole geno... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 118..208
e-value: 2.9E-9
score: 36.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig78contigC-linearis_contig78:793825..795006 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig78.15376.1mRNA_C-linearis_contig78.15376.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig78 793825..795008 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig78.15376.1 ID=prot_C-linearis_contig78.15376.1|Name=mRNA_C-linearis_contig78.15376.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=394bp
AAILRGRPCPTPVVPSSNEESARLRDQLGRFTTSTGDGETSPASSSGGGA
STGTSTIAVSASIMWDMTDSVSNSEDIKDWLRSNENLYHFLFLSTTGPAA
SYLLLFTPEEGVLPDGIAAWTGLNSKSKNSTRQRKILLQKELTYRVLPGG
QDPDVFFQEELFSLRNELKTMGRVVDDDEILGIILNGLPEEFSQVKLLAE
SQNDFDLDAAMETMRNMYGNRDAANGLSRIAKGRSSAMTATASTTFCTYC
KKEGHVEEQCFRKREKKPAGQVPGGRTGDWCTLHKTSLHDNSTCRKQNRN
GGNSGGGNKGRRQQGRRQGQRNHGNRYDNGGQHGGQNRHNNGNNSYTPGG
QHRHHQNNNSHAAQAHYGQDAPPSTTTVDYYNSAGQQAPGSSTA
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