mRNA_C-linearis_contig78.15376.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig78.15376.1
Unique NamemRNA_C-linearis_contig78.15376.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig78.15376.1 vs. uniprot
Match: A0A0C9YG32_9AGAM (Unplaced genomic scaffold scaffold_353, whole genome shotgun sequence n=1 Tax=Pisolithus microcarpus 441 TaxID=765257 RepID=A0A0C9YG32_9AGAM)

HSP 1 Score: 55.1 bits (131), Expect = 9.780e-5
Identity = 47/166 (28.31%), Postives = 77/166 (46.39%), Query Frame = 1 
Query:  322 PEEGVLPDGIAA--WTGLNSKSKNSTRQRKILLQKELTYRVLPGGQDPDVFFQEELFSLRNE---LKTMGRVVDDDEILGIILNGLPEEFSQVKLLAESQND-FDLDAAMETMRNMYGNRDAANGLSRIAK---GRSSAMTATASTTFCTYCKKEGHVEEQCFRKR 792
            P  GVL    AA  WT L  + +   +Q    L  EL      G    D   + +L S+R +   LK++G+ +DD  I   ++  LP  ++ ++++  S +D   +DA +  +     ++ A  G S + +   G+            CTYCKK GH+EE C RK+
Sbjct:  110 PLSGVLHATTAAQVWTKLCQRYEGKGKQTIAYLIGEL----FRGTLSDDSPMESQLNSMRQKAHILKSLGQPLDDSLIAIAMVISLPSSYATLRMILMSTDDKLSVDAVISQVLIEEKSQKATTGQSALTEKMSGQQRKAKDEKRKLKCTYCKKTGHIEEDCRRKK 271
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig78.15376.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0C9YG32_9AGAM9.780e-528.31Unplaced genomic scaffold scaffold_353, whole geno... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig78contigC-linearis_contig78:793825..795008 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1184
Cds size1182
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930478.0537376-CDS-C-linearis_contig78:793824..7950061622930478.0537376-CDS-C-linearis_contig78:793824..795006Chordaria linearis ClinC8C monoicousCDSC-linearis_contig78 793825..795006 +
1690881090.0874846-CDS-C-linearis_contig78:793824..7950061690881090.0874846-CDS-C-linearis_contig78:793824..795006Chordaria linearis ClinC8C monoicousCDSC-linearis_contig78 793825..795006 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig78.15376.1prot_C-linearis_contig78.15376.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig78 793825..795006 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig78.15376.1

>prot_C-linearis_contig78.15376.1 ID=prot_C-linearis_contig78.15376.1|Name=mRNA_C-linearis_contig78.15376.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=394bp
AAILRGRPCPTPVVPSSNEESARLRDQLGRFTTSTGDGETSPASSSGGGA
STGTSTIAVSASIMWDMTDSVSNSEDIKDWLRSNENLYHFLFLSTTGPAA
SYLLLFTPEEGVLPDGIAAWTGLNSKSKNSTRQRKILLQKELTYRVLPGG
QDPDVFFQEELFSLRNELKTMGRVVDDDEILGIILNGLPEEFSQVKLLAE
SQNDFDLDAAMETMRNMYGNRDAANGLSRIAKGRSSAMTATASTTFCTYC
KKEGHVEEQCFRKREKKPAGQVPGGRTGDWCTLHKTSLHDNSTCRKQNRN
GGNSGGGNKGRRQQGRRQGQRNHGNRYDNGGQHGGQNRHNNGNNSYTPGG
QHRHHQNNNSHAAQAHYGQDAPPSTTTVDYYNSAGQQAPGSSTA
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mRNA from alignment at C-linearis_contig78:793825..795008+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig78.15376.1 ID=mRNA_C-linearis_contig78.15376.1|Name=mRNA_C-linearis_contig78.15376.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1184bp|location=Sequence derived from alignment at C-linearis_contig78:793825..795008+ (Chordaria linearis ClinC8C monoicous)
GCCGCCATTTTGCGCGGTCGCCCCTGTCCAACACCCGTTGTACCTTCATC
AAACGAAGAGTCAGCACGTCTACGGGATCAACTCGGCCGCTTCACAACTT
CAACTGGGGACGGCGAAACTTCACCCGCTAGCAGCAGCGGAGGAGGAGCC
TCTACAGGAACTTCCACCATCGCCGTGTCTGCTTCCATCATGTGGGACAT
GACCGACAGCGTCTCCAACTCCGAGGACATCAAGGACTGGCTCCGGAGCA
ACGAGAATCTCTACCACTTTCTGTTCCTGTCTACAACTGGACCGGCGGCA
AGCTATCTTCTTCTGTTTACTCCGGAGGAAGGTGTGTTGCCGGATGGGAT
AGCAGCGTGGACAGGTCTGAACTCGAAGTCTAAAAACTCTACGCGTCAGA
GAAAAATACTTTTGCAAAAGGAGCTTACCTATCGAGTATTGCCTGGAGGT
CAAGACCCAGATGTTTTCTTCCAAGAAGAGCTATTTTCGCTTCGCAACGA
GCTTAAGACGATGGGGAGAGTTGTGGACGACGATGAGATTTTGGGTATCA
TTTTGAACGGACTACCAGAAGAGTTTTCTCAAGTCAAACTTCTCGCGGAG
TCACAGAATGATTTCGATCTCGACGCCGCGATGGAAACCATGCGCAACAT
GTATGGGAATCGCGACGCTGCCAACGGGCTTTCGCGCATAGCGAAGGGCC
GTTCGTCTGCCATGACTGCAACGGCCTCTACTACTTTTTGCACTTATTGC
AAGAAAGAGGGACACGTAGAGGAACAGTGTTTTAGAAAACGCGAGAAGAA
GCCGGCGGGACAAGTCCCCGGCGGCAGGACGGGTGACTGGTGCACTCTTC
ACAAAACATCCCTTCACGACAACTCTACTTGTCGGAAGCAAAACCGGAAT
GGCGGCAACAGCGGTGGTGGCAACAAAGGCCGCCGTCAGCAAGGACGCCG
CCAAGGTCAACGCAACCATGGAAACCGGTACGACAACGGGGGTCAGCACG
GCGGACAGAACCGCCACAACAACGGCAACAACAGCTACACCCCAGGTGGA
CAACACCGTCACCACCAAAACAACAACAGCCACGCCGCCCAAGCCCACTA
CGGACAAGATGCTCCGCCTTCAACCACCACGGTAGATTACTACAACTCTG
CCGGACAGCAAGCACCGGGCTCGTCAACCGCCCT
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Coding sequence (CDS) from alignment at C-linearis_contig78:793825..795008+

>mRNA_C-linearis_contig78.15376.1 ID=mRNA_C-linearis_contig78.15376.1|Name=mRNA_C-linearis_contig78.15376.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2364bp|location=Sequence derived from alignment at C-linearis_contig78:793825..795008+ (Chordaria linearis ClinC8C monoicous)
GCCGCCATTTTGCGCGGTCGCCCCTGTCCAACACCCGTTGTACCTTCATC
AAACGAAGAGTCAGCACGTCTACGGGATCAACTCGGCCGCTTCACAACTT
CAACTGGGGACGGCGAAACTTCACCCGCTAGCAGCAGCGGAGGAGGAGCC
TCTACAGGAACTTCCACCATCGCCGTGTCTGCTTCCATCATGTGGGACAT
GACCGACAGCGTCTCCAACTCCGAGGACATCAAGGACTGGCTCCGGAGCA
ACGAGAATCTCTACCACTTTCTGTTCCTGTCTACAACTGGACCGGCGGCA
AGCTATCTTCTTCTGTTTACTCCGGAGGAAGGTGTGTTGCCGGATGGGAT
AGCAGCGTGGACAGGTCTGAACTCGAAGTCTAAAAACTCTACGCGTCAGA
GAAAAATACTTTTGCAAAAGGAGCTTACCTATCGAGTATTGCCTGGAGGT
CAAGACCCAGATGTTTTCTTCCAAGAAGAGCTATTTTCGCTTCGCAACGA
GCTTAAGACGATGGGGAGAGTTGTGGACGACGATGAGATTTTGGGTATCA
TTTTGAACGGACTACCAGAAGAGTTTTCTCAAGTCAAACTTCTCGCGGAG
TCACAGAATGATTTCGATCTCGACGCCGCGATGGAAACCATGCGCAACAT
GTATGGGAATCGCGACGCTGCCAACGGGCTTTCGCGCATAGCGAAGGGCC
GTTCGTCTGCCATGACTGCAACGGCCTCTACTACTTTTTGCACTTATTGC
AAGAAAGAGGGACACGTAGAGGAACAGTGTTTTAGAAAACGCGAGAAGAA
GCCGGCGGGACAAGTCCCCGGCGGCAGGACGGGTGACTGGTGCACTCTTC
ACAAAACATCCCTTCACGACAACTCTACTTGTCGGAAGCAAAACCGGAAT
GGCGGCAACAGCGGTGGTGGCAACAAAGGCCGCCGTCAGCAAGGACGCCG
CCAAGGTCAACGCAACCATGGAAACCGGTACGACAACGGGGGTCAGCACG
GCGGACAGAACCGCCACAACAACGGCAACAACAGCTACACCCCAGGTGGA
CAACACCGTCACCACCAAAACAACAACAGCCACGCCGCCCAAGCCCACTA
CGGACAAGATGCTCCGCCTTCAACCACCACGGTAGATTACTACAACTCTG
CCGGACAGCAAGCACCGGGCTCGTCAACCGCCGCCGCCATTTTGCGCGGT
CGCCCCTGTCCAACACCCGTTGTACCTTCATCAAACGAAGAGTCAGCACG
TCTACGGGATCAACTCGGCCGCTTCACAACTTCAACTGGGGACGGCGAAA
CTTCACCCGCTAGCAGCAGCGGAGGAGGAGCCTCTACAGGAACTTCCACC
ATCGCCGTGTCTGCTTCCATCATGTGGGACATGACCGACAGCGTCTCCAA
CTCCGAGGACATCAAGGACTGGCTCCGGAGCAACGAGAATCTCTACCACT
TTCTGTTCCTGTCTACAACTGGACCGGCGGCAAGCTATCTTCTTCTGTTT
ACTCCGGAGGAAGGTGTGTTGCCGGATGGGATAGCAGCGTGGACAGGTCT
GAACTCGAAGTCTAAAAACTCTACGCGTCAGAGAAAAATACTTTTGCAAA
AGGAGCTTACCTATCGAGTATTGCCTGGAGGTCAAGACCCAGATGTTTTC
TTCCAAGAAGAGCTATTTTCGCTTCGCAACGAGCTTAAGACGATGGGGAG
AGTTGTGGACGACGATGAGATTTTGGGTATCATTTTGAACGGACTACCAG
AAGAGTTTTCTCAAGTCAAACTTCTCGCGGAGTCACAGAATGATTTCGAT
CTCGACGCCGCGATGGAAACCATGCGCAACATGTATGGGAATCGCGACGC
TGCCAACGGGCTTTCGCGCATAGCGAAGGGCCGTTCGTCTGCCATGACTG
CAACGGCCTCTACTACTTTTTGCACTTATTGCAAGAAAGAGGGACACGTA
GAGGAACAGTGTTTTAGAAAACGCGAGAAGAAGCCGGCGGGACAAGTCCC
CGGCGGCAGGACGGGTGACTGGTGCACTCTTCACAAAACATCCCTTCACG
ACAACTCTACTTGTCGGAAGCAAAACCGGAATGGCGGCAACAGCGGTGGT
GGCAACAAAGGCCGCCGTCAGCAAGGACGCCGCCAAGGTCAACGCAACCA
TGGAAACCGGTACGACAACGGGGGTCAGCACGGCGGACAGAACCGCCACA
ACAACGGCAACAACAGCTACACCCCAGGTGGACAACACCGTCACCACCAA
AACAACAACAGCCACGCCGCCCAAGCCCACTACGGACAAGATGCTCCGCC
TTCAACCACCACGGTAGATTACTACAACTCTGCCGGACAGCAAGCACCGG
GCTCGTCAACCGCC
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