prot_C-linearis_contig78.15360.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig78.15360.1
Unique Nameprot_C-linearis_contig78.15360.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length459
Homology
BLAST of mRNA_C-linearis_contig78.15360.1 vs. uniprot
Match: D7G8V3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8V3_ECTSI)

HSP 1 Score: 243 bits (621), Expect = 1.140e-72
Identity = 182/411 (44.28%), Postives = 209/411 (50.85%), Query Frame = 0
Query:   36 ADVNSSSSPWREYLDRLAGLCGAEASAPPTADLLRPPTDLLAHPQHQRPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPDVLANSXXXXXXXADLDAPSKSNRVLVLLDMNGTLLYRAKRPLRPAAAXXXXXXXXXXXXXXXXXXXXXXXXFVHGDPDPFQYYMRPGAGELVAAIHRHPRVRLAFYTSMQGVNALPAARFLMPDDGDGRLLEESGADVRPFIENNPFHPRDPSSXXXXXXXXXXXXXXMAAKTGSDGASGGVSPSPAPAGAAAKRFSIVQAVELVLTTGPLSRERRGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGADERSTFEGFGQDVHAPVVEAVVELLRGATAAAERWGLSPQARGRLQAWSRAAAA 446
            A  N ++SPW+E L+R+ GLC  + + PP ADL+RPPT+LLAHP+  R                                         +N         D D P K+ +VL+LLDMNGTLLYRAK+PLR +           XXXXXXX        FVHG+  P  YYMRPGA ELVAA+  HPR RLAFYTSM+GVNALPAARFLMP  GD RLL+ESG DVRPFIE NPF PR  S                   T  +     +  SP PA     R S +QAVELVLTTGPLSRE R                                                   GG   RSTFEGFG++V A VV +V+ELLR ATAAAERWGLSPQ R RL  WS AAAA
Sbjct:   48 ASCNPTTSPWKEKLNRIVGLC--DDAGPPVADLIRPPTNLLAHPRRHRGPGSITDTAEPLAADSPAAGCGGVTSHSSD-----------SNGAVPPRDGNDTDLPLKTKQVLILLDMNGTLLYRAKKPLRVS--------NDGXXXXXXXDSKWGAPAFVHGENVPLHYYMRPGAAELVAALEAHPRTRLAFYTSMRGVNALPAARFLMP--GDSRLLDESGEDVRPFIERNPFQPRASSWLC----------------TEEEEQQDEIVASP-PA-----RLSFLQAVELVLTTGPLSREWRDDDGRGGSPVVQVADASEEASPSGEGVAPPTAGRCE---------------GG---RSTFEGFGKNVEASVVASVLELLRRATAAAERWGLSPQERERLALWSSAAAA 395          
BLAST of mRNA_C-linearis_contig78.15360.1 vs. uniprot
Match: A0A6H5KMN8_9PHAE (FCP1 homology domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMN8_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 6.860e-43
Identity = 109/241 (45.23%), Postives = 128/241 (53.11%), Query Frame = 0
Query:   36 ADVNSSSSPWREYLDRLAGLC--GAEASAPPTADLLRPPTDLLAHPQHQRPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPDVLANSXXXXXXXADLDAPSKSNRVLVLLDMNGTLLYRAKRPLRPAAAXXXXXXXXXXXXXXXXXXXXXXXXFVHGDPDPFQYYMRPGAGELVAAIHRHPRVRLAFYTSMQGVNALPAARFLMPDDGDGRLLEESGADVRPFIENNPFHPRDP 274
            A  N ++S WREYL+R+AGLC   + A  PP ADL+RPP +LLAHPQ QR                                         +N         D+D PSK  +VL+LLDMNGTLL RAK+PLR +           XXXXXXX        FVHG+  P  YYMRPGA ELVAA+  HPR RLAFYTSM+GVNALPAARFLMPDD              P + + PF+ RDP
Sbjct:   49 ASCNPTTSHWREYLNRIAGLCDDASNAEGPPAADLIRPPNNLLAHPQRQRGPGSIANTVEPLAADCPAIGCGGVTNHSSD-----------SNGAVPPRDGHDMDVPSKHKQVLILLDMNGTLLRRAKKPLRVS--------NDGXXXXXXXNSTWGAPAFVHGENVPLHYYMRPGAAELVAALEAHPRARLAFYTSMRGVNALPAARFLMPDDSS----------AAPEVYDRPFNARDP 260          
BLAST of mRNA_C-linearis_contig78.15360.1 vs. uniprot
Match: A0A835ZD02_9STRA (PHD-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD02_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 5.310e-8
Identity = 44/118 (37.29%), Postives = 58/118 (49.15%), Query Frame = 0
Query:  139 APSKSNRVLVLLDMNGTLLYRAKRPLRPAAAXXXXXXXXXXXXXXXXXXXXXXXXFVHGDPDPFQYYMRPGAGELVAAIHRHPRVRLAFYTSMQGVNALPAARFLMPDDGDGRLLEES 256
            A + ++++LVLLDMNGT++YRAK  L    A                             P    YY+RP A ELV  +  H RV LAFYTSM+  NALPA       +G+GR L ++
Sbjct:   10 AEAAASKILVLLDMNGTIVYRAKAQLGGCPAAFTHLVGRDSRT-----------------PMRLHYYLRPHAMELVRFLRGHARVTLAFYTSMRLENALPAVEGDDSGNGNGRQLSDT 110          
BLAST of mRNA_C-linearis_contig78.15360.1 vs. uniprot
Match: A0A7S2RHV1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RHV1_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 7.310e-5
Identity = 38/106 (35.85%), Postives = 47/106 (44.34%), Query Frame = 0
Query:  136 DLDAPSKSNRVLVLLDMNGTLLYRAKRPLRPAAAXXXXXXXXXXXXXXXXXXXXXXXXFVHGDPDPFQYYMRPGAGELVAAIHRHPRVRLAFYTSMQGVNALPAAR 241
            D  A      +L+LLDMNGTLL R K  L   A                         F H       Y++R G  +LV  +  HPR R+AFYTSM+  NALPA +
Sbjct:  212 DPPAAGTQRPILILLDMNGTLLIRLKGGLGKQAPD-----------------------FAHAG---LNYFIRRGTKQLVRTLLAHPRARVAFYTSMRESNALPAVK 291          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig78.15360.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G8V3_ECTSI1.140e-7244.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KMN8_9PHAE6.860e-4345.23FCP1 homology domain-containing protein n=1 Tax=Ec... [more]
A0A835ZD02_9STRA5.310e-837.29PHD-type domain-containing protein n=1 Tax=Tribone... [more]
A0A7S2RHV1_9STRA7.310e-535.85Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023214HAD superfamilyGENE3D3.40.50.1000coord: 125..262
e-value: 2.9E-6
score: 28.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig78contigC-linearis_contig78:379332..382939 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig78.15360.1mRNA_C-linearis_contig78.15360.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig78 377986..383454 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig78.15360.1 ID=prot_C-linearis_contig78.15360.1|Name=mRNA_C-linearis_contig78.15360.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=459bp
MATGVQENGAVRATTAATQQPPPPPPPPPENGGAPADVNSSSSPWREYLD
RLAGLCGAEASAPPTADLLRPPTDLLAHPQHQRPQQQQQQQQQEEAGSTT
TTTTTTTVDGGSGTSNGSSGPDVLANSGAAAAAAADLDAPSKSNRVLVLL
DMNGTLLYRAKRPLRPAAAAAASGDCSEAEAEAAAAKVAAAAAFVHGDPD
PFQYYMRPGAGELVAAIHRHPRVRLAFYTSMQGVNALPAARFLMPDDGDG
RLLEESGADVRPFIENNPFHPRDPSSSSSSSSSSSSSPCSMAAKTGSDGA
SGGVSPSPAPAGAAAKRFSIVQAVELVLTTGPLSRERRGSGGGGGASSSS
SSSSTSSSSPMPMPTAAVIASSGGGPGPGRAAAEATGDGGGADERSTFEG
FGQDVHAPVVEAVVELLRGATAAAERWGLSPQARGRLQAWSRAAAAGAGK
ATASACHS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR023214HAD_sf