prot_C-linearis_contig78.15357.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_C-linearis_contig78.15357.1
Unique Name	prot_C-linearis_contig78.15357.1
Type	polypeptide
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length	213

Homology

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BLAST of mRNA_C-linearis_contig78.15357.1 vs. uniprot
Match: D7G8V9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8V9_ECTSI)

HSP 1 Score: 375 bits (962), Expect = 1.280e-130
Identity = 190/211 (90.05%), Postives = 200/211 (94.79%), Query Frame = 0

Query:    1 MKSVIALTAVLASASAFVPSASFVGSRVANVARPASTSAVSMAASDMVGSSAPLGFFDPMGFSKGPAERLNAYRESELKHGRTAMLAVVGFLTQENWHPLYNGGLSSNPLKAITEVPPEGLLQIAMFIGFLEYIISQIVLKPGYIPGDYVGANDLFSEEGPHSQWAMYQTKELHNGRAAMMGIAGLVTHNLITGGMPAFEQISRGVYSGGI 211
            MKSVIA +AVLASASAFVPSASFVGS V++V RPAS++AVSMAASDMVG+SAPLGFFDPMGFSKGPAERLNAYRE+ELKHGRTAMLAVVGFLTQENWHPLYNGGLSSNP+KAITEVPPEGL QI MFIGFLEY+ISQIV KPGYIPGDYVGANDLFSEEGPHSQW  YQ KELHNGRAAMMGI GLVTHN +TGGMPAFEQISRGVYSGGI
Sbjct:    1 MKSVIAFSAVLASASAFVPSASFVGSPVSSVTRPASSTAVSMAASDMVGASAPLGFFDPMGFSKGPAERLNAYREAELKHGRTAMLAVVGFLTQENWHPLYNGGLSSNPVKAITEVPPEGLFQIVMFIGFLEYVISQIVAKPGYIPGDYVGANDLFSEEGPHSQWETYQLKELHNGRAAMMGITGLVTHNFLTGGMPAFEQISRGVYSGGI 211

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BLAST of mRNA_C-linearis_contig78.15357.1 vs. uniprot
Match: I2CPJ1_NANGC (Protein fucoxanthin chlorophyll a c protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPJ1_NANGC)

HSP 1 Score: 175 bits (444), Expect = 6.130e-52
Identity = 109/211 (51.66%), Postives = 136/211 (64.45%), Query Frame = 0

Query:    5 IALTAVLASASAFVPSASFVGSRVANVARPASTSAVSMAASDMVGSSAPLGFFDPMGFS-KGPAERLNAYRESELKHGRTAMLAVVGFLTQENWHPLYNGGLSSNPLKAITEVPPEGLLQIAMFIGFLEYIISQIVLKPGYIPGDYVGANDLF--SEEGPHSQWAMYQTKELHNGRAAMMGIAGLVTHNLITGGMPAFEQISRG---VYSG 209
            +A    +AS SAFVP A          + P +   V+M    M+GSSAP   FDP+GF+ K   + LN YRESELKHGR AMLAV+G++ QE WHPLY+G LSSNPLKA+TEVP  G  QI + I  +EY+ ++I   PGY PGDY+G  +    S+EG    W  YQTKEL+NGR AM+ IAGL+  +LITG   A EQIS G   V+SG
Sbjct:    9 LAAAVTMASVSAFVPPAP---------SAPRTRGVVNMGLDGMIGSSAPFKNFDPLGFAAKADQKTLNKYRESELKHGRVAMLAVLGWVVQEVWHPLYDGKLSSNPLKALTEVPLIGWAQIFVAINVIEYLQNKIKELPGYRPGDYLGTWEWVEQSDEG----WDNYQTKELNNGRLAMVAIAGLIAQDLITG-QAALEQISAGNTGVFSG 205

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BLAST of mRNA_C-linearis_contig78.15357.1 vs. uniprot
Match: A0A7S0XDX8_9STRA (Hypothetical protein n=2 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XDX8_9STRA)

HSP 1 Score: 157 bits (398), Expect = 3.250e-45
Identity = 88/158 (55.70%), Postives = 107/158 (67.72%), Query Frame = 0

Query:   46 DMVGSSAPLGFFDPMGFSKGPA-ERLNAYRESELKHGRTAMLAVVGFLTQENWHPLYNGGLSSNPLKAITEVPPEGLLQIAMFIGFLEYIISQIVLKPGYIPGDYVGANDLFSEEGPHSQWAMYQTKELHNGRAAMMGIAGLVTHNLITGGMPAFEQI 202
            ++VG+SAPLGFFDP GFSKG + E L  YRESELKHGR AMLAV+G+LTQE +HP Y G LS NPL A  EVPP G +QI  FIG LEYI +   ++  Y  GD++G   L   +   S+W   QT+EL+NGR AM  I G +TH  ITG   A EQ+
Sbjct:   37 ELVGASAPLGFFDPFGFSKGVSDETLFKYRESELKHGRVAMLAVLGWLTQERFHPFYEGKLSGNPLVAFGEVPPLGFVQIIAFIGLLEYIGT---IQNKYQSGDFLGIKPLIDNQDD-SRWVSIQTRELNNGRLAMFAILGEITHAAITG-KGALEQL 189

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BLAST of mRNA_C-linearis_contig78.15357.1 vs. uniprot
Match: A0A7S3AG67_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AG67_9EUKA)

HSP 1 Score: 149 bits (376), Expect = 1.110e-41
Identity = 80/153 (52.29%), Postives = 102/153 (66.67%), Query Frame = 0

Query:   46 DMVGSSAPLGFFDPMGFSKGPA-ERLNAYRESELKHGRTAMLAVVGFLTQENWHPLYNGGLSSNPLKAITEVPPEGLLQIAMFIGFLEYIISQIVLKPGYIPGDYVGANDLFSEEGPHSQWAMYQTKELHNGRAAMMGIAGLVTHNLITGGMP 197
            DMVGSSAPLGFFDP+GFSK  + E +  +RE+ELKHGR AMLAV G +T + +HPL+ G  SSNPL A+T+VP  G LQI  FI F+E I      +P Y PG+++G +    +    + W  YQTKEL+NGR AM    G++TH  ITG  P
Sbjct:   47 DMVGSSAPLGFFDPLGFSKDASPETMKKFREAELKHGRVAMLAVFGMITADKFHPLFGGQCSSNPLLALTQVPKLGWLQILTFIMFMEVIGILNSRRPDYEPGNFLGTSQWEMD----ATWDSYQTKELNNGRLAMFASIGMLTHAYITGKGP 195

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BLAST of mRNA_C-linearis_contig78.15357.1 vs. uniprot
Match: A0A835YRG9_9STRA (Fucoxanthin chlorophyll a c protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRG9_9STRA)

HSP 1 Score: 148 bits (374), Expect = 2.030e-41
Identity = 92/192 (47.92%), Postives = 125/192 (65.10%), Query Frame = 0

Query:    5 IALTAVLASASAFVPSASFVGSRVANVARPASTSAVSMAASDMVGSSAPLGFFDPMGF-SKGPAERLNAYRESELKHGRTAMLAVVGF-LTQENWHPLYNGGLSSNPLKAITEVPPEGLLQIAMFIGFLEYIISQIVLKPGYIPGDYVGANDLFSEEGPHSQWAMYQTKELHNGRAAMMGIAGLVTHNLITG 194
            +AL A++ASA+AF P A F+G+R+A V   A++SAV+M+  +M G SAPLGFFDP+GF SK   E +  YRESEL+HGRTAMLAV+G+  T+   H        +NPL A  +VP  G  QI  F G +E++ ++I  +PG+  GDY+G+ DL  E     QW  +QTKEL+NGR AM+   GL+    I G
Sbjct:    5 LALAAMVASAAAFAP-APFMGTRLAAV--KAASSAVTMSVKEMPGVSAPLGFFDPLGFASKASPETITKYRESELRHGRTAMLAVLGWAFTEAGCHLPVFPNAGTNPLAAAGQVPFWGWAQIFAFCGVIEFVQAKIRERPGFQAGDYIGSGDLMDEGD--DQWKSFQTKELNNGRLAMLASIGLIGQTAIFG 191

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BLAST of mRNA_C-linearis_contig78.15357.1 vs. uniprot
Match: A0A7S3IA89_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Favella ehrenbergii TaxID=182087 RepID=A0A7S3IA89_9SPIT)

HSP 1 Score: 147 bits (371), Expect = 2.680e-41
Identity = 79/153 (51.63%), Postives = 101/153 (66.01%), Query Frame = 0

Query:   46 DMVGSSAPLGFFDPMGFSKGPAERLNA-YRESELKHGRTAMLAVVGFLTQENWHPLYNGGLSSNPLKAITEVPPEGLLQIAMFIGFLEYIISQIVLKPGYIPGDYVGANDLFSEEGPHSQWAMYQTKELHNGRAAMMGIAGLVTHNLITGGMP 197
            DMVG+  PLGFFDP+GFSK  +    A +RE+ELKHGR AMLA  G +T + +HPLY+G LSSNPL AI +VP  GLLQI +FIGF+E        +P Y PGD++G++   + E     W  YQ +EL+NGR AM    G++TH  ITG  P
Sbjct:   19 DMVGACKPLGFFDPLGFSKDASPASMAKFREAELKHGRVAMLACAGMITADKFHPLYDGKLSSNPLLAIAQVPKLGLLQILLFIGFMEVFGILNSRRPDYKPGDFLGSSQWDTTE----VWDNYQLRELNNGRLAMFASIGMLTHAYITGKGP 167

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BLAST of mRNA_C-linearis_contig78.15357.1 vs. uniprot
Match: A0A7S4B2U4_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B2U4_CHRCT)

HSP 1 Score: 146 bits (368), Expect = 1.720e-40
Identity = 77/153 (50.33%), Postives = 101/153 (66.01%), Query Frame = 0

Query:   47 MVGSSAPLGFFDPMGFSK--GPAERLNAYRESELKHGRTAMLAVVGFLTQENWHPLYNGGLSSNPLKAITEVPPEGLLQIAMFIGFLEYIISQIVLKPGYIPGDYVGANDLFSEEGPHSQWAMYQTKELHNGRAAMMGIAGLVTHNLITGGMP 197
            +VG SAPLGFFDP+G++K   PA+ L  YRE ELKHGR AMLA +G +  + WHPLY GG S+NPL AIT+VP  GLLQI  FIGF+E +    + +  Y PG+++G+    + E     W  YQT+EL+NGR AM    G++ H  +TG  P
Sbjct:   55 LVGDSAPLGFFDPLGYTKKASPAD-LKKYRECELKHGRVAMLASMGMVVADFWHPLYGGGNSANPLVAITQVPKAGLLQILAFIGFMEVMGQLNMQRADYEPGNFLGSGQWETSES----WDDYQTRELNNGRLAMFASIGMLAHAALTGKGP 202

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BLAST of mRNA_C-linearis_contig78.15357.1 vs. uniprot
Match: A0A7S3TFW5_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TFW5_EMIHU)

HSP 1 Score: 145 bits (366), Expect = 3.640e-40
Identity = 83/166 (50.00%), Postives = 107/166 (64.46%), Query Frame = 0

Query:   47 MVGSSAPLGFFDPMGFSKGPA-ERLNAYRESELKHGRTAMLAVVGFLTQENWHPLYNGGLSSNPLKAITEVPPEGLLQIAMFIGFLEYIISQIVLKPGYIPGDYVGANDLFSEEGPHSQWAMYQTKELHNGRAAMMGIAGLVTHNLITGGMPAFEQISRGVYSGGI 211
            MVG   PLG+FDP+GFSK  + E +  +RE+ELKHGR AMLA  G +T + +HPL+ G LSSNPL AIT+VP  GLLQI +FIGF+E        +P Y PG+++G +    E  P   W  YQ +EL+NGR AM G  G++TH  ITG  P  E +  G  +GGI
Sbjct:   49 MVGDCKPLGYFDPLGFSKDASPETMAKFREAELKHGRVAMLACAGMITADKFHPLFGGKLSSNPLLAITQVPKLGLLQILLFIGFMEVFGILNSRRPDYEPGNFLGTSQW--ETTP--TWDAYQLRELNNGRLAMFGAIGMLTHAYITGKGP-LELLDAG--NGGI 207

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BLAST of mRNA_C-linearis_contig78.15357.1 vs. uniprot
Match: Q2IA68_ISOGA (Chloroplast light harvesting protein isoform 11 n=1 Tax=Isochrysis galbana TaxID=37099 RepID=Q2IA68_ISOGA)

HSP 1 Score: 144 bits (363), Expect = 7.080e-40
Identity = 80/153 (52.29%), Postives = 103/153 (67.32%), Query Frame = 0

Query:   47 MVGSSAPLGFFDPMGFSK--GPAERLNAYRESELKHGRTAMLAVVGFLTQENWHPLYNGGLSSNPLKAITEVPPEGLLQIAMFIGFLEYIISQIVLKPGYIPGDYVGANDLFSEEGPHSQWAMYQTKELHNGRAAMMGIAGLVTHNLITGGMP 197
            MVG SAPLGFFDP GFSK   PA  +  +RE+ELKHGR AMLA  G +T + +HPLY+G LSSNPL AI++VP  GLLQI +FIGF+E        +P Y PG+++G+     E G  + W  +Q +EL+NGR AM    G++TH+ ITG  P
Sbjct:   38 MVGDSAPLGFFDPFGFSKEASPAS-MAKFREAELKHGRVAMLASAGMITADKFHPLYDGKLSSNPLLAISQVPKLGLLQIVLFIGFMEVFGILNSRRPDYQPGNFLGSAQW--ETG--ASWDDFQVRELNNGRLAMFASIGMLTHSSITGKGP 185

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BLAST of mRNA_C-linearis_contig78.15357.1 vs. uniprot
Match: A0A7S0E1K9_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0E1K9_9EUKA)

HSP 1 Score: 144 bits (362), Expect = 8.920e-40
Identity = 79/167 (47.31%), Postives = 108/167 (64.67%), Query Frame = 0

Query:   33 RPASTS-AVSMAASDMVGSSAPLGFFDPMGFSKGPA-ERLNAYRESELKHGRTAMLAVVGFLTQENWHPLYNGGLSSNPLKAITEVPPEGLLQIAMFIGFLEYIISQIVLKPGYIPGDYVGANDLFSEEGPHSQWAMYQTKELHNGRAAMMGIAGLVTHNLITGGMP 197
            RPAS+S AV M    ++G  APL +FDP+GFSK  + E +  YRE+ELKHGR AMLA  G +TQ+ WHPL++G LS+NPL AI + P  G++QI +FI F+E I      +  Y PG+++G++   + E     W  YQ KEL+NGR AM G  G++  + ITG  P
Sbjct:   19 RPASSSVAVQMKVGGLIGDCAPLAYFDPLGFSKDASPETMKKYREAELKHGRVAMLAAWGMITQDAWHPLFDGKLSANPLLAIIQTPKLGVIQILIFIAFIEVIGILNTRRADYEPGNFLGSSQWETGE----TWENYQLKELNNGRLAMFGSIGMLVGSYITGKGP 181

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig78.15357.1 vs. uniprot

BLAST of mRNA_C-linearis_contig78.15357.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G8V9_ECTSI	1.280e-130	90.05	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
I2CPJ1_NANGC	6.130e-52	51.66	Protein fucoxanthin chlorophyll a c protein n=1 Ta...	[more]
A0A7S0XDX8_9STRA	3.250e-45	55.70	Hypothetical protein n=2 Tax=Chromulina nebulosa T...	[more]
A0A7S3AG67_9EUKA	1.110e-41	52.29	Hypothetical protein n=1 Tax=Haptolina ericina Tax...	[more]
A0A835YRG9_9STRA	2.030e-41	47.92	Fucoxanthin chlorophyll a c protein n=1 Tax=Tribon...	[more]
A0A7S3IA89_9SPIT	2.680e-41	51.63	Hypothetical protein (Fragment) n=1 Tax=Favella eh...	[more]
A0A7S4B2U4_CHRCT	1.720e-40	50.33	Hypothetical protein n=1 Tax=Chrysotila carterae T...	[more]
A0A7S3TFW5_EMIHU	3.640e-40	50.00	Hypothetical protein n=1 Tax=Emiliania huxleyi Tax...	[more]
Q2IA68_ISOGA	7.080e-40	52.29	Chloroplast light harvesting protein isoform 11 n=...	[more]
A0A7S0E1K9_9EUKA	8.920e-40	47.31	Hypothetical protein n=1 Tax=Phaeocystis antarctic...	[more]

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InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 45..206 e-value: 2.1E-25 score: 91.8
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 49..190 e-value: 3.1E-29 score: 102.6
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 4..198
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 12..16
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 17..212
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..3
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 4..11
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..16
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..16 score: 0.669
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 37..194
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 4..198

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig78	contig	C-linearis_contig78:326640..332421 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig78.15357.1	mRNA_C-linearis_contig78.15357.1	Chordaria linearis ClinC8C monoicous	mRNA	C-linearis_contig78 325374..332461 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_C-linearis_contig78.15357.1 ID=prot_C-linearis_contig78.15357.1|Name=mRNA_C-linearis_contig78.15357.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=213bp
MKSVIALTAVLASASAFVPSASFVGSRVANVARPASTSAVSMAASDMVGS
SAPLGFFDPMGFSKGPAERLNAYRESELKHGRTAMLAVVGFLTQENWHPL
YNGGLSSNPLKAITEVPPEGLLQIAMFIGFLEYIISQIVLKPGYIPGDYV
GANDLFSEEGPHSQWAMYQTKELHNGRAAMMGIAGLVTHNLITGGMPAFE
QISRGVYSGGIQ*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR022796	Chloroa_b-bind
IPR001344	Chloro_AB-bd_pln