prot_C-linearis_contig78.15355.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig78.15355.1
Unique Nameprot_C-linearis_contig78.15355.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length146
Homology
BLAST of mRNA_C-linearis_contig78.15355.1 vs. uniprot
Match: D7G8W1_ECTSI (tRNA-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8W1_ECTSI)

HSP 1 Score: 268 bits (684), Expect = 2.040e-90
Identity = 141/145 (97.24%), Postives = 143/145 (98.62%), Query Frame = 0
Query:    1 MMAVSHAAAEEISNMEDVPKLKDPVAISDFEALDIRVGRIVLAELIPDPEHDNKPSRKYLSLVVDLGNEKRRVVSAVRSIVDVEDAIGKAVLMAANVEEETILGLPSRGKLLSSSNFSKEPMPRTLRTVLLGGGGVPPGSAVSGL 145
            MMAVSHAAAEEISNMEDVPKLKDPVAI+DFEALDIRVGRIVLAELIPDP+H NKPSRKYLSLVVDLGNEKRRVVSAVRSIVDVEDAIGKAVLMAANVEEETILGLPSRGKLLS SNFSKEPMPRTLRTVLLGGGGVPPGSAVSGL
Sbjct:    2 MMAVSHAAAEEISNMEDVPKLKDPVAIADFEALDIRVGRIVLAELIPDPDHGNKPSRKYLSLVVDLGNEKRRVVSAVRSIVDVEDAIGKAVLMAANVEEETILGLPSRGKLLSGSNFSKEPMPRTLRTVLLGGGGVPPGSAVSGL 146          
BLAST of mRNA_C-linearis_contig78.15355.1 vs. uniprot
Match: A0A836CNH0_9STRA (tRNA-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNH0_9STRA)

HSP 1 Score: 187 bits (476), Expect = 1.530e-58
Identity = 96/144 (66.67%), Postives = 117/144 (81.25%), Query Frame = 0
Query:    2 MAVSHAAAEEISNMEDVPKLKDPVAISDFEALDIRVGRIVLAELIPDPEHDNKPSRKYLSLVVDLGNEKRRVVSAVRSIVDVEDAIGKAVLMAANVEEETILGLPSRGKLLSSSNFSKEPMPRTLRTVLLGGGGVPPGSAVSGL 145
            +AVS A  EE ++  DVP L+  V+++ +EALDIRVGRIV AE +PDP+H NKPSRKYLSLVV LGNE R ++S VR + DVE+AIGK+VL+ AN EEE ILG PSRG+LL ++N+SK PMPRTLRTVLLGGG VPPGS V+GL
Sbjct:   16 VAVSTALGEEATDSADVPALQPDVSVASYEALDIRVGRIVKAETVPDPDHGNKPSRKYLSLVVALGNEFRSIISGVRPVFDVEEAIGKSVLVVANTEEEVILGRPSRGRLLVAANYSKAPMPRTLRTVLLGGGPVPPGSQVTGL 159          
BLAST of mRNA_C-linearis_contig78.15355.1 vs. uniprot
Match: A0A7S0MGA1_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MGA1_9CRYP)

HSP 1 Score: 160 bits (405), Expect = 3.960e-47
Identity = 82/144 (56.94%), Postives = 113/144 (78.47%), Query Frame = 0
Query:    2 MAVSHAAAEEISNME--DVPKLKDPVAISDFEALDIRVGRIVLAELIPDPEHDNKPSRKYLSLVVDLGNEKRRVVSAVRSIVDVEDAIGKAVLMAANVEEETILGLPSRGKLLSSSNFSKEPMPRTLRTVLLGGGGVPPGSAVS 143
            MA    A +E  N++  D+P +KD V+ +  ++LDIRVGRI  A+LIPDPEH+ KPSRKYL L+V++G EKR +V+A R I DVE++IG++VL+A NVE++T+LG+ S G+LLS+SN ++ P+PRTLRTVL  GGG+PPGS VS
Sbjct:   61 MAFVKGAVDEEDNLDPSDIPPVKDEVSNALLDSLDIRVGRIERADLIPDPEHEMKPSRKYLRLIVNIGTEKRTIVAASRGIYDVEESIGRSVLVACNVEQQTVLGVASHGRLLSASNPTRRPIPRTLRTVLSKGGGLPPGSPVS 204          
BLAST of mRNA_C-linearis_contig78.15355.1 vs. uniprot
Match: A0A2K1L6P8_PHYPA (tRNA-binding domain-containing protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1L6P8_PHYPA)

HSP 1 Score: 100 bits (250), Expect = 1.300e-23
Identity = 61/148 (41.22%), Postives = 87/148 (58.78%), Query Frame = 0
Query:    5 SHAAAEEISNMED---VPKLKDPVAISDFEALDIRVGRIVLAELIPDPEHD---NKP--SRKYLSLVVDLGNEKRRVVSAVRSIVDVEDAIGKAVLMAANVEEETILGLPSRGKLLSSSNFSKEPMPRTLRTVLLGGGGVPPGSAVSG 144
            +H    E+    D    P +K  V  S FE++D+RVG I  A+ + D E      KP  SRK+L L VD+G E+R +VS  + ++DVEDA+GK VL+ ANV    + G+ S G +L+  N+   PMPR+ + +L G G +PPGS V G
Sbjct:   72 AHTETAEVPETTDRVACPAVKPEVDPSIFESVDVRVGLITDAKPVQDAEMTAKRGKPTLSRKFLQLTVDIGCEQRTIVSECKYVMDVEDAVGKKVLIVANVPPTEVNGIKSHGVVLTGFNYDPTPMPRSFKVILPGLGRLPPGSQVKG 219          
BLAST of mRNA_C-linearis_contig78.15355.1 vs. uniprot
Match: A9TWI9_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9TWI9_PHYPA)

HSP 1 Score: 97.8 bits (242), Expect = 1.880e-22
Identity = 59/144 (40.97%), Postives = 85/144 (59.03%), Query Frame = 0
Query:    5 SHAAAEEISNMED---VPKLKDPVAISDFEALDIRVGRIVLAELIPDPEHD---NKP--SRKYLSLVVDLGNEKRRVVSAVRSIVDVEDAIGKAVLMAANVEEETILGLPSRGKLLSSSNFSKEPMPRTLRTVLLGGGGVPPGS 140
            +H    E+    D    P +K  V  S FE++D+RVG I  A+ + D E      KP  SRK+L L VD+G E+R +VS  + ++DVEDA+GK VL+ ANV    + G+ S G +L+  N+   PMPR+ + +L G G +PPGS
Sbjct:   44 AHTETAEVPETTDRVACPAVKPEVDPSIFESVDVRVGLITDAKPVQDAEMTAKRGKPTLSRKFLQLTVDIGCEQRTIVSECKYVMDVEDAVGKKVLIVANVPPTEVNGIKSHGVVLTGFNYDPTPMPRSFKVILPGLGRLPPGS 187          
BLAST of mRNA_C-linearis_contig78.15355.1 vs. uniprot
Match: A0A1F8JXF2_9BACT (Methionine--tRNA ligase n=1 Tax=Chlamydiae bacterium RIFCSPLOWO2_01_FULL_28_7 TaxID=1797606 RepID=A0A1F8JXF2_9BACT)

HSP 1 Score: 77.4 bits (189), Expect = 9.060e-14
Identity = 38/103 (36.89%), Postives = 64/103 (62.14%), Query Frame = 0
Query:   14 NMEDVPKLKDPVAISDFEALDIRVGRIVLAELIPDPEHDNKPSRKYLSLVVDLGNEKRRVVSAVRSIVDVEDAIGKAVLMAANVEEETILGLPSRGKLLSSSN 116
            N++   KLK+ +   DF  LD+RVG+I+ AE +       + S K L + VD+G EKR++VS++      ED IGK V++ AN++   ++G+ S+G +L++ N
Sbjct:  559 NLKSFEKLKEEITYEDFSKLDLRVGKIISAEKV-------EKSNKLLKITVDIGFEKRQIVSSIAKTFKPEDLIGKKVIIVANLKTAKLMGIDSQGMILAAGN 654          
BLAST of mRNA_C-linearis_contig78.15355.1 vs. uniprot
Match: UPI001AE5ECDA (methionine--tRNA ligase n=1 Tax=Methanolinea mesophila TaxID=547055 RepID=UPI001AE5ECDA)

HSP 1 Score: 75.9 bits (185), Expect = 3.110e-13
Identity = 42/108 (38.89%), Postives = 68/108 (62.96%), Query Frame = 0
Query:   19 PKLKDPVAISDFEALDIRVGRIVLAELIPDPEHDNKPSRKYLSLVVDLGNEKRRVVSAVRSIVDVEDAIGKAVLMAANVEEETILGLPSRGKLLSSSNFSKEPMPRTL 126
            PK+++ ++I DF  +DIR+G+I+ AE IP        S+K L L+VDLG EKR++VS +      ED +G+ V + AN+   TI G+ SRG +L++ + +   +P T+
Sbjct:  556 PKMEE-ISIEDFCRMDIRIGKILKAEPIPK-------SKKLLRLIVDLGQEKRQIVSGIAQFYTPEDLVGQQVAVLANLAPATIFGVESRGMILAAGDTASLLVPLTV 655          
BLAST of mRNA_C-linearis_contig78.15355.1 vs. uniprot
Match: A0A1G8X7N8_9EURY (Methionine--tRNA ligase n=1 Tax=Methanoculleus thermophilus TaxID=2200 RepID=A0A1G8X7N8_9EURY)

HSP 1 Score: 75.1 bits (183), Expect = 5.780e-13
Identity = 45/108 (41.67%), Postives = 64/108 (59.26%), Query Frame = 0
Query:   10 EEISNMEDVPKLKDP-VAISDFEALDIRVGRIVLAELIPDPEHDNKPSRKYLSLVVDLGNEKRRVVSAVRSIVDVEDAIGKAVLMAANVEEETILGLPSRGKLLSSSN 116
            E +   ++  K K P V+I +F  LDIRVG+IV AE I       K S+K   L+VDLG+EKR+VVS +      E+ +GK V M AN+    I G+ SRG +L++ +
Sbjct:  546 ERVEKAKEAAKPKTPTVSIDEFAKLDIRVGQIVSAEPI-------KGSKKLYKLIVDLGSEKRQVVSGIAQFYSPEELVGKDVAMIANLAPAKIFGVESRGMILAAGD 646          
BLAST of mRNA_C-linearis_contig78.15355.1 vs. uniprot
Match: L0AB28_CALLD (Protein containing C-terminal region/beta chain of methionyl-tRNA synthetase n=2 Tax=Caldisphaera lagunensis TaxID=200415 RepID=L0AB28_CALLD)

HSP 1 Score: 70.1 bits (170), Expect = 8.480e-13
Identity = 33/94 (35.11%), Postives = 64/94 (68.09%), Query Frame = 0
Query:   21 LKDPVAISDFEALDIRVGRIVLAELIPDPEHDNKPSRKYLSLVVDLGNEKRRVVSAVRSIVDVEDAIGKAVLMAANVEEETILGLPSRGKLLSS 114
            L++ +  S+F  +D+RVG+++ AEL+P+       SRK + L+VDLG E+R++++ ++     ED +GK V++ AN++ + + GL S+G +L++
Sbjct:    4 LEEKIDYSEFSKIDLRVGKVISAELVPN-------SRKLIKLIVDLGTEQRQILAGLQKWYKPEDFVGKFVVVVANLKSKIMGGLESQGMILAA 90          
BLAST of mRNA_C-linearis_contig78.15355.1 vs. uniprot
Match: T0M350_9ARCH (Methionyl-tRNA synthetase n=1 Tax=Thermoplasmatales archaeon A-plasma TaxID=667135 RepID=T0M350_9ARCH)

HSP 1 Score: 69.7 bits (169), Expect = 1.140e-12
Identity = 32/94 (34.04%), Postives = 57/94 (60.64%), Query Frame = 0
Query:   20 KLKDPVAISDFEALDIRVGRIVLAELIPDPEHDNKPSRKYLSLVVDLGNEKRRVVSAVRSIVDVEDAIGKAVLMAANVEEETILGLPSRGKLLS 113
            ++ + + I DF  ++ R GR+V  E +P        SR  L +VVDLG EKR+++S++      E+ +GK +++  N+++ T +GL S+G LL+
Sbjct:    3 RVSEEIGIEDFRKIEFRTGRVVECEKVPR-------SRSLLRIVVDLGEEKRQIISSISEFYSPEEMVGKTIVVVTNLKKATFMGLESQGMLLA 89          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig78.15355.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8W1_ECTSI2.040e-9097.24tRNA-binding domain-containing protein n=2 Tax=Ect... [more]
A0A836CNH0_9STRA1.530e-5866.67tRNA-binding domain-containing protein n=1 Tax=Tri... [more]
A0A7S0MGA1_9CRYP3.960e-4756.94Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A2K1L6P8_PHYPA1.300e-2341.22tRNA-binding domain-containing protein n=1 Tax=Phy... [more]
A9TWI9_PHYPA1.880e-2240.97Predicted protein n=1 Tax=Physcomitrium patens Tax... [more]
A0A1F8JXF2_9BACT9.060e-1436.89Methionine--tRNA ligase n=1 Tax=Chlamydiae bacteri... [more]
UPI001AE5ECDA3.110e-1338.89methionine--tRNA ligase n=1 Tax=Methanolinea mesop... [more]
A0A1G8X7N8_9EURY5.780e-1341.67Methionine--tRNA ligase n=1 Tax=Methanoculleus the... [more]
L0AB28_CALLD8.480e-1335.11Protein containing C-terminal region/beta chain of... [more]
T0M350_9ARCH1.140e-1234.04Methionyl-tRNA synthetase n=1 Tax=Thermoplasmatale... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002547tRNA-binding domainPFAMPF01588tRNA_bindcoord: 35..118
e-value: 2.2E-7
score: 30.9
IPR002547tRNA-binding domainPROSITEPS50886TRBDcoord: 29..143
score: 17.89
NoneNo IPR availableGENE3D2.40.50.140coord: 19..141
e-value: 4.0E-20
score: 73.7
NoneNo IPR availablePANTHERPTHR11586:SF35coord: 18..142
NoneNo IPR availablePANTHERPTHR11586FAMILY NOT NAMEDcoord: 18..142
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 25..141

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig78contigC-linearis_contig78:307636..309558 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig78.15355.1mRNA_C-linearis_contig78.15355.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig78 307636..309558 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig78.15355.1 ID=prot_C-linearis_contig78.15355.1|Name=mRNA_C-linearis_contig78.15355.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=146bp
MMAVSHAAAEEISNMEDVPKLKDPVAISDFEALDIRVGRIVLAELIPDPE
HDNKPSRKYLSLVVDLGNEKRRVVSAVRSIVDVEDAIGKAVLMAANVEEE
TILGLPSRGKLLSSSNFSKEPMPRTLRTVLLGGGGVPPGSAVSGL*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002547tRNA-bd_dom
IPR012340NA-bd_OB-fold