mRNA_C-linearis_contig78.15355.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig78.15355.1 vs. uniprot
Match: D7G8W1_ECTSI (tRNA-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8W1_ECTSI) HSP 1 Score: 268 bits (684), Expect = 2.040e-90 Identity = 141/145 (97.24%), Postives = 143/145 (98.62%), Query Frame = 1
Query: 1 MMAVSHAAAEEISNMEDVPKLKDPVAISDFEALDIRVGRIVLAELIPDPEHDNKPSRKYLSLVVDLGNEKRRVVSAVRSIVDVEDAIGKAVLMAANVEEETILGLPSRGKLLSSSNFSKEPMPRTLRTVLLGGGGVPPGSAVSGL 435
MMAVSHAAAEEISNMEDVPKLKDPVAI+DFEALDIRVGRIVLAELIPDP+H NKPSRKYLSLVVDLGNEKRRVVSAVRSIVDVEDAIGKAVLMAANVEEETILGLPSRGKLLS SNFSKEPMPRTLRTVLLGGGGVPPGSAVSGL
Sbjct: 2 MMAVSHAAAEEISNMEDVPKLKDPVAIADFEALDIRVGRIVLAELIPDPDHGNKPSRKYLSLVVDLGNEKRRVVSAVRSIVDVEDAIGKAVLMAANVEEETILGLPSRGKLLSGSNFSKEPMPRTLRTVLLGGGGVPPGSAVSGL 146
BLAST of mRNA_C-linearis_contig78.15355.1 vs. uniprot
Match: A0A836CNH0_9STRA (tRNA-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNH0_9STRA) HSP 1 Score: 187 bits (476), Expect = 1.530e-58 Identity = 96/144 (66.67%), Postives = 117/144 (81.25%), Query Frame = 1
Query: 4 MAVSHAAAEEISNMEDVPKLKDPVAISDFEALDIRVGRIVLAELIPDPEHDNKPSRKYLSLVVDLGNEKRRVVSAVRSIVDVEDAIGKAVLMAANVEEETILGLPSRGKLLSSSNFSKEPMPRTLRTVLLGGGGVPPGSAVSGL 435
+AVS A EE ++ DVP L+ V+++ +EALDIRVGRIV AE +PDP+H NKPSRKYLSLVV LGNE R ++S VR + DVE+AIGK+VL+ AN EEE ILG PSRG+LL ++N+SK PMPRTLRTVLLGGG VPPGS V+GL
Sbjct: 16 VAVSTALGEEATDSADVPALQPDVSVASYEALDIRVGRIVKAETVPDPDHGNKPSRKYLSLVVALGNEFRSIISGVRPVFDVEEAIGKSVLVVANTEEEVILGRPSRGRLLVAANYSKAPMPRTLRTVLLGGGPVPPGSQVTGL 159
BLAST of mRNA_C-linearis_contig78.15355.1 vs. uniprot
Match: A0A7S0MGA1_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MGA1_9CRYP) HSP 1 Score: 160 bits (405), Expect = 3.960e-47 Identity = 82/144 (56.94%), Postives = 113/144 (78.47%), Query Frame = 1
Query: 4 MAVSHAAAEEISNME--DVPKLKDPVAISDFEALDIRVGRIVLAELIPDPEHDNKPSRKYLSLVVDLGNEKRRVVSAVRSIVDVEDAIGKAVLMAANVEEETILGLPSRGKLLSSSNFSKEPMPRTLRTVLLGGGGVPPGSAVS 429
MA A +E N++ D+P +KD V+ + ++LDIRVGRI A+LIPDPEH+ KPSRKYL L+V++G EKR +V+A R I DVE++IG++VL+A NVE++T+LG+ S G+LLS+SN ++ P+PRTLRTVL GGG+PPGS VS
Sbjct: 61 MAFVKGAVDEEDNLDPSDIPPVKDEVSNALLDSLDIRVGRIERADLIPDPEHEMKPSRKYLRLIVNIGTEKRTIVAASRGIYDVEESIGRSVLVACNVEQQTVLGVASHGRLLSASNPTRRPIPRTLRTVLSKGGGLPPGSPVS 204
BLAST of mRNA_C-linearis_contig78.15355.1 vs. uniprot
Match: A0A2K1L6P8_PHYPA (tRNA-binding domain-containing protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1L6P8_PHYPA) HSP 1 Score: 100 bits (250), Expect = 1.300e-23 Identity = 61/148 (41.22%), Postives = 87/148 (58.78%), Query Frame = 1
Query: 13 SHAAAEEISNMED---VPKLKDPVAISDFEALDIRVGRIVLAELIPDPEHD---NKP--SRKYLSLVVDLGNEKRRVVSAVRSIVDVEDAIGKAVLMAANVEEETILGLPSRGKLLSSSNFSKEPMPRTLRTVLLGGGGVPPGSAVSG 432
+H E+ D P +K V S FE++D+RVG I A+ + D E KP SRK+L L VD+G E+R +VS + ++DVEDA+GK VL+ ANV + G+ S G +L+ N+ PMPR+ + +L G G +PPGS V G
Sbjct: 72 AHTETAEVPETTDRVACPAVKPEVDPSIFESVDVRVGLITDAKPVQDAEMTAKRGKPTLSRKFLQLTVDIGCEQRTIVSECKYVMDVEDAVGKKVLIVANVPPTEVNGIKSHGVVLTGFNYDPTPMPRSFKVILPGLGRLPPGSQVKG 219
BLAST of mRNA_C-linearis_contig78.15355.1 vs. uniprot
Match: A9TWI9_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9TWI9_PHYPA) HSP 1 Score: 97.8 bits (242), Expect = 1.880e-22 Identity = 59/144 (40.97%), Postives = 85/144 (59.03%), Query Frame = 1
Query: 13 SHAAAEEISNMED---VPKLKDPVAISDFEALDIRVGRIVLAELIPDPEHD---NKP--SRKYLSLVVDLGNEKRRVVSAVRSIVDVEDAIGKAVLMAANVEEETILGLPSRGKLLSSSNFSKEPMPRTLRTVLLGGGGVPPGS 420
+H E+ D P +K V S FE++D+RVG I A+ + D E KP SRK+L L VD+G E+R +VS + ++DVEDA+GK VL+ ANV + G+ S G +L+ N+ PMPR+ + +L G G +PPGS
Sbjct: 44 AHTETAEVPETTDRVACPAVKPEVDPSIFESVDVRVGLITDAKPVQDAEMTAKRGKPTLSRKFLQLTVDIGCEQRTIVSECKYVMDVEDAVGKKVLIVANVPPTEVNGIKSHGVVLTGFNYDPTPMPRSFKVILPGLGRLPPGS 187
BLAST of mRNA_C-linearis_contig78.15355.1 vs. uniprot
Match: A0A1F8JXF2_9BACT (Methionine--tRNA ligase n=1 Tax=Chlamydiae bacterium RIFCSPLOWO2_01_FULL_28_7 TaxID=1797606 RepID=A0A1F8JXF2_9BACT) HSP 1 Score: 77.4 bits (189), Expect = 9.060e-14 Identity = 38/103 (36.89%), Postives = 64/103 (62.14%), Query Frame = 1
Query: 40 NMEDVPKLKDPVAISDFEALDIRVGRIVLAELIPDPEHDNKPSRKYLSLVVDLGNEKRRVVSAVRSIVDVEDAIGKAVLMAANVEEETILGLPSRGKLLSSSN 348
N++ KLK+ + DF LD+RVG+I+ AE + + S K L + VD+G EKR++VS++ ED IGK V++ AN++ ++G+ S+G +L++ N
Sbjct: 559 NLKSFEKLKEEITYEDFSKLDLRVGKIISAEKV-------EKSNKLLKITVDIGFEKRQIVSSIAKTFKPEDLIGKKVIIVANLKTAKLMGIDSQGMILAAGN 654
BLAST of mRNA_C-linearis_contig78.15355.1 vs. uniprot
Match: UPI001AE5ECDA (methionine--tRNA ligase n=1 Tax=Methanolinea mesophila TaxID=547055 RepID=UPI001AE5ECDA) HSP 1 Score: 75.9 bits (185), Expect = 3.110e-13 Identity = 42/108 (38.89%), Postives = 68/108 (62.96%), Query Frame = 1
Query: 55 PKLKDPVAISDFEALDIRVGRIVLAELIPDPEHDNKPSRKYLSLVVDLGNEKRRVVSAVRSIVDVEDAIGKAVLMAANVEEETILGLPSRGKLLSSSNFSKEPMPRTL 378
PK+++ ++I DF +DIR+G+I+ AE IP S+K L L+VDLG EKR++VS + ED +G+ V + AN+ TI G+ SRG +L++ + + +P T+
Sbjct: 556 PKMEE-ISIEDFCRMDIRIGKILKAEPIPK-------SKKLLRLIVDLGQEKRQIVSGIAQFYTPEDLVGQQVAVLANLAPATIFGVESRGMILAAGDTASLLVPLTV 655
BLAST of mRNA_C-linearis_contig78.15355.1 vs. uniprot
Match: A0A1G8X7N8_9EURY (Methionine--tRNA ligase n=1 Tax=Methanoculleus thermophilus TaxID=2200 RepID=A0A1G8X7N8_9EURY) HSP 1 Score: 75.1 bits (183), Expect = 5.780e-13 Identity = 45/108 (41.67%), Postives = 64/108 (59.26%), Query Frame = 1
Query: 28 EEISNMEDVPKLKDP-VAISDFEALDIRVGRIVLAELIPDPEHDNKPSRKYLSLVVDLGNEKRRVVSAVRSIVDVEDAIGKAVLMAANVEEETILGLPSRGKLLSSSN 348
E + ++ K K P V+I +F LDIRVG+IV AE I K S+K L+VDLG+EKR+VVS + E+ +GK V M AN+ I G+ SRG +L++ +
Sbjct: 546 ERVEKAKEAAKPKTPTVSIDEFAKLDIRVGQIVSAEPI-------KGSKKLYKLIVDLGSEKRQVVSGIAQFYSPEELVGKDVAMIANLAPAKIFGVESRGMILAAGD 646
BLAST of mRNA_C-linearis_contig78.15355.1 vs. uniprot
Match: L0AB28_CALLD (Protein containing C-terminal region/beta chain of methionyl-tRNA synthetase n=2 Tax=Caldisphaera lagunensis TaxID=200415 RepID=L0AB28_CALLD) HSP 1 Score: 70.1 bits (170), Expect = 8.480e-13 Identity = 33/94 (35.11%), Postives = 64/94 (68.09%), Query Frame = 1
Query: 61 LKDPVAISDFEALDIRVGRIVLAELIPDPEHDNKPSRKYLSLVVDLGNEKRRVVSAVRSIVDVEDAIGKAVLMAANVEEETILGLPSRGKLLSS 342
L++ + S+F +D+RVG+++ AEL+P+ SRK + L+VDLG E+R++++ ++ ED +GK V++ AN++ + + GL S+G +L++
Sbjct: 4 LEEKIDYSEFSKIDLRVGKVISAELVPN-------SRKLIKLIVDLGTEQRQILAGLQKWYKPEDFVGKFVVVVANLKSKIMGGLESQGMILAA 90
BLAST of mRNA_C-linearis_contig78.15355.1 vs. uniprot
Match: T0M350_9ARCH (Methionyl-tRNA synthetase n=1 Tax=Thermoplasmatales archaeon A-plasma TaxID=667135 RepID=T0M350_9ARCH) HSP 1 Score: 69.7 bits (169), Expect = 1.140e-12 Identity = 32/94 (34.04%), Postives = 57/94 (60.64%), Query Frame = 1
Query: 58 KLKDPVAISDFEALDIRVGRIVLAELIPDPEHDNKPSRKYLSLVVDLGNEKRRVVSAVRSIVDVEDAIGKAVLMAANVEEETILGLPSRGKLLS 339
++ + + I DF ++ R GR+V E +P SR L +VVDLG EKR+++S++ E+ +GK +++ N+++ T +GL S+G LL+
Sbjct: 3 RVSEEIGIEDFRKIEFRTGRVVECEKVPR-------SRSLLRIVVDLGEEKRQIISSISEFYSPEEMVGKTIVVVTNLKKATFMGLESQGMLLA 89 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig78.15355.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig78.15355.1 >prot_C-linearis_contig78.15355.1 ID=prot_C-linearis_contig78.15355.1|Name=mRNA_C-linearis_contig78.15355.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=146bp MMAVSHAAAEEISNMEDVPKLKDPVAISDFEALDIRVGRIVLAELIPDPEback to top mRNA from alignment at C-linearis_contig78:307636..309558- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig78.15355.1 ID=mRNA_C-linearis_contig78.15355.1|Name=mRNA_C-linearis_contig78.15355.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1923bp|location=Sequence derived from alignment at C-linearis_contig78:307636..309558- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig78:307636..309558- >mRNA_C-linearis_contig78.15355.1 ID=mRNA_C-linearis_contig78.15355.1|Name=mRNA_C-linearis_contig78.15355.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=876bp|location=Sequence derived from alignment at C-linearis_contig78:307636..309558- (Chordaria linearis ClinC8C monoicous)back to top |