prot_C-linearis_contig76.15173.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig76.15173.1
Unique Nameprot_C-linearis_contig76.15173.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length106
Homology
BLAST of mRNA_C-linearis_contig76.15173.1 vs. uniprot
Match: D7FVV5_ECTSI (Transcription elongation factor 1 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVV5_ECTSI)

HSP 1 Score: 191 bits (484), Expect = 3.270e-61
Identity = 92/105 (87.62%), Postives = 98/105 (93.33%), Query Frame = 0
Query:    1 MGRRKKSTKKIVIKKNTTLDKVFKCPFCNHDKVVECTMKRKEKIARLRCRMCDISYEMGINYLTEPIDVYTDWIDECEAVNAVEGAAEESKNDEVFIDDQEIAEG 105
            MGRRKKSTKKIV+KKNTTLDKVFKCPFCNHDKVVECTM +KEK ARL CRMCD++YEM INYLTEPIDVYTDWIDECEAVNAV+ AAEE K+DE FIDDQEIAEG
Sbjct:    1 MGRRKKSTKKIVVKKNTTLDKVFKCPFCNHDKVVECTMNKKEKTARLLCRMCDVNYEMTINYLTEPIDVYTDWIDECEAVNAVDAAAEEHKDDEQFIDDQEIAEG 105          
BLAST of mRNA_C-linearis_contig76.15173.1 vs. uniprot
Match: A0A485LI04_9STRA (Transcription elongation factor 1 homolog n=6 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485LI04_9STRA)

HSP 1 Score: 111 bits (278), Expect = 4.360e-30
Identity = 50/84 (59.52%), Postives = 62/84 (73.81%), Query Frame = 0
Query:    1 MGRRKKSTKKIVIKKNTTLDKVFKCPFCNHDKVVECTMKRKEKIARLRCRMCDISYEMGINYLTEPIDVYTDWIDECEAVNAVE 84
            MGRRK STKKIV +K   + +VFKCPFC+HD  V+C M R   +  L CR+C  SY+  INYL+EPIDVYTDWIDECEA++  +
Sbjct:    1 MGRRKTSTKKIVTRKKQVVARVFKCPFCSHDDSVQCKMDRDRNVGHLSCRVCSESYQTNINYLSEPIDVYTDWIDECEALHTAQ 84          
BLAST of mRNA_C-linearis_contig76.15173.1 vs. uniprot
Match: A0A024U4B4_9STRA (Transcription elongation factor 1 homolog n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024U4B4_9STRA)

HSP 1 Score: 111 bits (278), Expect = 4.360e-30
Identity = 50/82 (60.98%), Postives = 62/82 (75.61%), Query Frame = 0
Query:    1 MGRRKKSTKKIVIKKNTTLDKVFKCPFCNHDKVVECTMKRKEKIARLRCRMCDISYEMGINYLTEPIDVYTDWIDECEAVNA 82
            MGRRK STKKIV +K   + +VFKCPFC+HD  V+C M R   +  L CR+C  SY+  INYL+EPIDVYTDWIDECEA+++
Sbjct:    1 MGRRKTSTKKIVTRKKQVVARVFKCPFCSHDDSVQCKMDRDRNVGHLTCRICSESYQSNINYLSEPIDVYTDWIDECEALHS 82          
BLAST of mRNA_C-linearis_contig76.15173.1 vs. uniprot
Match: A0A329SPD8_9STRA (Transcription elongation factor 1 homolog n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SPD8_9STRA)

HSP 1 Score: 111 bits (277), Expect = 2.150e-29
Identity = 51/82 (62.20%), Postives = 62/82 (75.61%), Query Frame = 0
Query:    1 MGRRKKSTKKIVIKKNTTLDKVFKCPFCNHDKVVECTMKRKEKIARLRCRMCDISYEMGINYLTEPIDVYTDWIDECEAVNA 82
            MGRRKKSTKKI  +K   +  VFKCPFC+HD+ VEC M R+  I  L CR+C  S++  I+YL+ PIDVYTDWIDECEA+NA
Sbjct:   46 MGRRKKSTKKIQTRKKQVVSTVFKCPFCSHDEAVECKMDRERNIGHLSCRVCTESFQTPIHYLSAPIDVYTDWIDECEALNA 127          
BLAST of mRNA_C-linearis_contig76.15173.1 vs. uniprot
Match: M4B5A6_HYAAE (Transcription elongation factor 1 homolog n=16 Tax=Oomycota TaxID=4762 RepID=M4B5A6_HYAAE)

HSP 1 Score: 109 bits (273), Expect = 2.380e-29
Identity = 49/82 (59.76%), Postives = 62/82 (75.61%), Query Frame = 0
Query:    1 MGRRKKSTKKIVIKKNTTLDKVFKCPFCNHDKVVECTMKRKEKIARLRCRMCDISYEMGINYLTEPIDVYTDWIDECEAVNA 82
            MGRRKK+TKK+  +K   +  VFKCPFC+HD+ VEC M R+  I  L CR+C  S++  I+YL+ PIDVYTDWIDECEA+NA
Sbjct:    1 MGRRKKATKKVQTRKKQAVSTVFKCPFCSHDEAVECKMDRERNIGHLSCRVCTESFQTPIHYLSAPIDVYTDWIDECEALNA 82          
BLAST of mRNA_C-linearis_contig76.15173.1 vs. uniprot
Match: A0A6A3LNQ0_9STRA (Transcription elongation factor 1 homolog n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3LNQ0_9STRA)

HSP 1 Score: 110 bits (276), Expect = 3.620e-29
Identity = 51/82 (62.20%), Postives = 62/82 (75.61%), Query Frame = 0
Query:    1 MGRRKKSTKKIVIKKNTTLDKVFKCPFCNHDKVVECTMKRKEKIARLRCRMCDISYEMGINYLTEPIDVYTDWIDECEAVNA 82
            MGRRKKSTKKI  +K   +  VFKCPFC+HD+ VEC M R+  I  L CR+C  S++  I+YL+ PIDVYTDWIDECEA+NA
Sbjct:   52 MGRRKKSTKKISTRKKQIVSTVFKCPFCSHDEAVECKMDRERNIGHLSCRVCTESFQTPIHYLSAPIDVYTDWIDECEALNA 133          
BLAST of mRNA_C-linearis_contig76.15173.1 vs. uniprot
Match: A0A835ZFT2_9STRA (Transcription elongation factor 1 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFT2_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.970e-28
Identity = 51/82 (62.20%), Postives = 60/82 (73.17%), Query Frame = 0
Query:    1 MGRRKKSTKKIVIKKNTTLDKVFKCPFCNHDKVVECTMKRKEKIARLRCRMCDISYEMGINYLTEPIDVYTDWIDECEAVNA 82
            MGRRK STKKI  KK  TLD  FKCPFC HDKVV+CTM  K+ +  L+CR CD  Y   INYL+EPID++T+WID  EA +A
Sbjct:    1 MGRRKSSTKKISNKKRPTLDTSFKCPFCCHDKVVQCTMNFKDNVGTLQCRRCDTKYSTVINYLSEPIDIFTEWIDAAEAEHA 82          
BLAST of mRNA_C-linearis_contig76.15173.1 vs. uniprot
Match: H3HB17_PHYRM (Uncharacterized protein n=15 Tax=Phytophthora TaxID=4783 RepID=H3HB17_PHYRM)

HSP 1 Score: 111 bits (277), Expect = 6.160e-27
Identity = 51/82 (62.20%), Postives = 62/82 (75.61%), Query Frame = 0
Query:    1 MGRRKKSTKKIVIKKNTTLDKVFKCPFCNHDKVVECTMKRKEKIARLRCRMCDISYEMGINYLTEPIDVYTDWIDECEAVNA 82
            MGRRKKSTKKI  +K   +  VFKCPFC+HD+ VEC M R+  I  L CR+C  S++  I+YL+ PIDVYTDWIDECEA+NA
Sbjct:  310 MGRRKKSTKKIQTRKKQVVSTVFKCPFCSHDEAVECKMDRERNIGHLSCRVCTESFQTPIHYLSAPIDVYTDWIDECEALNA 391          
BLAST of mRNA_C-linearis_contig76.15173.1 vs. uniprot
Match: A0A0G4J6E9_PLABS (Transcription elongation factor 1 homolog n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J6E9_PLABS)

HSP 1 Score: 99.8 bits (247), Expect = 2.470e-25
Identity = 48/84 (57.14%), Postives = 57/84 (67.86%), Query Frame = 0
Query:    1 MGRRKKSTKKIVIKKNTTLDKVFKCPFCNHDKVVECTMKRKEKIARLRCRMCDISYEMGINYLTEPIDVYTDWIDECEAVNAVE 84
            MG+RK S K++V K    L   F CPFCNH   VEC MKR E +A + CR+CD +Y M IN LTEP+DVY +WIDECE  NA E
Sbjct:    1 MGKRK-SKKRVVRKVVDKLATAFDCPFCNHSLTVECKMKRSENVAEISCRICDANYRMPINSLTEPVDVYCEWIDECEQANAEE 83          
BLAST of mRNA_C-linearis_contig76.15173.1 vs. uniprot
Match: UPI001CC465E2 (transcription elongation factor 1 homolog n=2 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC465E2)

HSP 1 Score: 99.4 bits (246), Expect = 5.070e-25
Identity = 46/85 (54.12%), Postives = 57/85 (67.06%), Query Frame = 0
Query:    1 MGRRKKSTKKIVIKKNTTLDKVFKCPFCNHDKVVECTMKRKEKIARLRCRMCDISYEMGINYLTEPIDVYTDWIDECEAVNAVEG 85
            MG+RK S K    KK   L+ VF CPFCNH+K V CT+ RKE I  L C +C   Y   IN L+EPID+Y++WIDECE VN ++G
Sbjct:    1 MGKRKSSAKPAPKKKMEKLESVFNCPFCNHEKSVNCTIDRKEMIGELTCCICQEKYSTAINNLSEPIDIYSEWIDECEKVNDMDG 85          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig76.15173.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVV5_ECTSI3.270e-6187.62Transcription elongation factor 1 homolog n=2 Tax=... [more]
A0A485LI04_9STRA4.360e-3059.52Transcription elongation factor 1 homolog n=6 Tax=... [more]
A0A024U4B4_9STRA4.360e-3060.98Transcription elongation factor 1 homolog n=3 Tax=... [more]
A0A329SPD8_9STRA2.150e-2962.20Transcription elongation factor 1 homolog n=2 Tax=... [more]
M4B5A6_HYAAE2.380e-2959.76Transcription elongation factor 1 homolog n=16 Tax... [more]
A0A6A3LNQ0_9STRA3.620e-2962.20Transcription elongation factor 1 homolog n=1 Tax=... [more]
A0A835ZFT2_9STRA1.970e-2862.20Transcription elongation factor 1 homolog n=1 Tax=... [more]
H3HB17_PHYRM6.160e-2762.20Uncharacterized protein n=15 Tax=Phytophthora TaxI... [more]
A0A0G4J6E9_PLABS2.470e-2557.14Transcription elongation factor 1 homolog n=1 Tax=... [more]
UPI001CC465E25.070e-2554.12transcription elongation factor 1 homolog n=2 Tax=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038567Transcription elongation factor 1 superfamilyGENE3D2.20.25.190coord: 23..83
e-value: 2.3E-27
score: 96.6
IPR007808Transcription elongation factor 1PFAMPF05129Elf1coord: 2..78
e-value: 2.4E-29
score: 101.2
IPR007808Transcription elongation factor 1PANTHERPTHR20934UNCHARACTERIZEDcoord: 1..91
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 1..81

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig76contigC-linearis_contig76:291475..292869 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig76.15173.1mRNA_C-linearis_contig76.15173.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig76 291212..293919 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig76.15173.1 ID=prot_C-linearis_contig76.15173.1|Name=mRNA_C-linearis_contig76.15173.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=106bp
MGRRKKSTKKIVIKKNTTLDKVFKCPFCNHDKVVECTMKRKEKIARLRCR
MCDISYEMGINYLTEPIDVYTDWIDECEAVNAVEGAAEESKNDEVFIDDQ
EIAEG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038567T_Elf1_sf
IPR007808Elf1