mRNA_C-linearis_contig76.15173.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig76.15173.1
Unique NamemRNA_C-linearis_contig76.15173.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig76.15173.1 vs. uniprot
Match: D7FVV5_ECTSI (Transcription elongation factor 1 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVV5_ECTSI)

HSP 1 Score: 191 bits (484), Expect = 6.410e-56
Identity = 92/105 (87.62%), Postives = 98/105 (93.33%), Query Frame = 2 
Query:  101 MGRRKKSTKKIVIKKNTTLDKVFKCPFCNHDKVVECTMKRKEKIARLRCRMCDISYEMGINYLTEPIDVYTDWIDECEAVNAVEGAAEESKNDEVFIDDQEIAEG 415
            MGRRKKSTKKIV+KKNTTLDKVFKCPFCNHDKVVECTM +KEK ARL CRMCD++YEM INYLTEPIDVYTDWIDECEAVNAV+ AAEE K+DE FIDDQEIAEG
Sbjct:    1 MGRRKKSTKKIVVKKNTTLDKVFKCPFCNHDKVVECTMNKKEKTARLLCRMCDVNYEMTINYLTEPIDVYTDWIDECEAVNAVDAAAEEHKDDEQFIDDQEIAEG 105
[Close]
BLAST of mRNA_C-linearis_contig76.15173.1 vs. uniprot
Match: A0A485LI04_9STRA (Transcription elongation factor 1 homolog n=6 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485LI04_9STRA)

HSP 1 Score: 111 bits (277), Expect = 3.890e-26
Identity = 50/84 (59.52%), Postives = 62/84 (73.81%), Query Frame = 2 
Query:  101 MGRRKKSTKKIVIKKNTTLDKVFKCPFCNHDKVVECTMKRKEKIARLRCRMCDISYEMGINYLTEPIDVYTDWIDECEAVNAVE 352
            MGRRK STKKIV +K   + +VFKCPFC+HD  V+C M R   +  L CR+C  SY+  INYL+EPIDVYTDWIDECEA++  +
Sbjct:    1 MGRRKTSTKKIVTRKKQVVARVFKCPFCSHDDSVQCKMDRDRNVGHLSCRVCSESYQTNINYLSEPIDVYTDWIDECEALHTAQ 84
[Close]
BLAST of mRNA_C-linearis_contig76.15173.1 vs. uniprot
Match: A0A024U4B4_9STRA (Transcription elongation factor 1 homolog n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024U4B4_9STRA)

HSP 1 Score: 111 bits (277), Expect = 3.890e-26
Identity = 50/82 (60.98%), Postives = 62/82 (75.61%), Query Frame = 2 
Query:  101 MGRRKKSTKKIVIKKNTTLDKVFKCPFCNHDKVVECTMKRKEKIARLRCRMCDISYEMGINYLTEPIDVYTDWIDECEAVNA 346
            MGRRK STKKIV +K   + +VFKCPFC+HD  V+C M R   +  L CR+C  SY+  INYL+EPIDVYTDWIDECEA+++
Sbjct:    1 MGRRKTSTKKIVTRKKQVVARVFKCPFCSHDDSVQCKMDRDRNVGHLTCRICSESYQSNINYLSEPIDVYTDWIDECEALHS 82
[Close]
BLAST of mRNA_C-linearis_contig76.15173.1 vs. uniprot
Match: A0A6A3LNQ0_9STRA (Transcription elongation factor 1 homolog n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3LNQ0_9STRA)

HSP 1 Score: 112 bits (279), Expect = 8.480e-26
Identity = 58/106 (54.72%), Postives = 73/106 (68.87%), Query Frame = 2 
Query:   47 GARH-RKKAEERT*KPVST-----MGRRKKSTKKIVIKKNTTLDKVFKCPFCNHDKVVECTMKRKEKIARLRCRMCDISYEMGINYLTEPIDVYTDWIDECEAVNA 346
            G +H RK+A  +  K + T     MGRRKKSTKKI  +K   +  VFKCPFC+HD+ VEC M R+  I  L CR+C  S++  I+YL+ PIDVYTDWIDECEA+NA
Sbjct:   28 GRKHKRKEAGSKKTKEIKTDTERAMGRRKKSTKKISTRKKQIVSTVFKCPFCSHDEAVECKMDRERNIGHLSCRVCTESFQTPIHYLSAPIDVYTDWIDECEALNA 133
[Close]
BLAST of mRNA_C-linearis_contig76.15173.1 vs. uniprot
Match: M4B5A6_HYAAE (Transcription elongation factor 1 homolog n=16 Tax=Oomycota TaxID=4762 RepID=M4B5A6_HYAAE)

HSP 1 Score: 109 bits (272), Expect = 1.850e-25
Identity = 49/82 (59.76%), Postives = 62/82 (75.61%), Query Frame = 2 
Query:  101 MGRRKKSTKKIVIKKNTTLDKVFKCPFCNHDKVVECTMKRKEKIARLRCRMCDISYEMGINYLTEPIDVYTDWIDECEAVNA 346
            MGRRKK+TKK+  +K   +  VFKCPFC+HD+ VEC M R+  I  L CR+C  S++  I+YL+ PIDVYTDWIDECEA+NA
Sbjct:    1 MGRRKKATKKVQTRKKQAVSTVFKCPFCSHDEAVECKMDRERNIGHLSCRVCTESFQTPIHYLSAPIDVYTDWIDECEALNA 82
[Close]
BLAST of mRNA_C-linearis_contig76.15173.1 vs. uniprot
Match: A0A329SPD8_9STRA (Transcription elongation factor 1 homolog n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SPD8_9STRA)

HSP 1 Score: 110 bits (276), Expect = 1.880e-25
Identity = 51/82 (62.20%), Postives = 62/82 (75.61%), Query Frame = 2 
Query:  101 MGRRKKSTKKIVIKKNTTLDKVFKCPFCNHDKVVECTMKRKEKIARLRCRMCDISYEMGINYLTEPIDVYTDWIDECEAVNA 346
            MGRRKKSTKKI  +K   +  VFKCPFC+HD+ VEC M R+  I  L CR+C  S++  I+YL+ PIDVYTDWIDECEA+NA
Sbjct:   46 MGRRKKSTKKIQTRKKQVVSTVFKCPFCSHDEAVECKMDRERNIGHLSCRVCTESFQTPIHYLSAPIDVYTDWIDECEALNA 127
[Close]
BLAST of mRNA_C-linearis_contig76.15173.1 vs. uniprot
Match: A0A835ZFT2_9STRA (Transcription elongation factor 1 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFT2_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.420e-24
Identity = 51/82 (62.20%), Postives = 60/82 (73.17%), Query Frame = 2 
Query:  101 MGRRKKSTKKIVIKKNTTLDKVFKCPFCNHDKVVECTMKRKEKIARLRCRMCDISYEMGINYLTEPIDVYTDWIDECEAVNA 346
            MGRRK STKKI  KK  TLD  FKCPFC HDKVV+CTM  K+ +  L+CR CD  Y   INYL+EPID++T+WID  EA +A
Sbjct:    1 MGRRKSSTKKISNKKRPTLDTSFKCPFCCHDKVVQCTMNFKDNVGTLQCRRCDTKYSTVINYLSEPIDIFTEWIDAAEAEHA 82
[Close]
BLAST of mRNA_C-linearis_contig76.15173.1 vs. uniprot
Match: H3HB17_PHYRM (Uncharacterized protein n=15 Tax=Phytophthora TaxID=4783 RepID=H3HB17_PHYRM)

HSP 1 Score: 110 bits (276), Expect = 5.870e-23
Identity = 51/82 (62.20%), Postives = 62/82 (75.61%), Query Frame = 2 
Query:  101 MGRRKKSTKKIVIKKNTTLDKVFKCPFCNHDKVVECTMKRKEKIARLRCRMCDISYEMGINYLTEPIDVYTDWIDECEAVNA 346
            MGRRKKSTKKI  +K   +  VFKCPFC+HD+ VEC M R+  I  L CR+C  S++  I+YL+ PIDVYTDWIDECEA+NA
Sbjct:  310 MGRRKKSTKKIQTRKKQVVSTVFKCPFCSHDEAVECKMDRERNIGHLSCRVCTESFQTPIHYLSAPIDVYTDWIDECEALNA 391
[Close]
BLAST of mRNA_C-linearis_contig76.15173.1 vs. uniprot
Match: A0A0G4J6E9_PLABS (Transcription elongation factor 1 homolog n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J6E9_PLABS)

HSP 1 Score: 99.4 bits (246), Expect = 9.070e-22
Identity = 48/84 (57.14%), Postives = 57/84 (67.86%), Query Frame = 2 
Query:  101 MGRRKKSTKKIVIKKNTTLDKVFKCPFCNHDKVVECTMKRKEKIARLRCRMCDISYEMGINYLTEPIDVYTDWIDECEAVNAVE 352
            MG+RK S K++V K    L   F CPFCNH   VEC MKR E +A + CR+CD +Y M IN LTEP+DVY +WIDECE  NA E
Sbjct:    1 MGKRK-SKKRVVRKVVDKLATAFDCPFCNHSLTVECKMKRSENVAEISCRICDANYRMPINSLTEPVDVYCEWIDECEQANAEE 83
[Close]
BLAST of mRNA_C-linearis_contig76.15173.1 vs. uniprot
Match: UPI001CC465E2 (transcription elongation factor 1 homolog n=2 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC465E2)

HSP 1 Score: 99.0 bits (245), Expect = 1.810e-21
Identity = 46/85 (54.12%), Postives = 57/85 (67.06%), Query Frame = 2 
Query:  101 MGRRKKSTKKIVIKKNTTLDKVFKCPFCNHDKVVECTMKRKEKIARLRCRMCDISYEMGINYLTEPIDVYTDWIDECEAVNAVEG 355
            MG+RK S K    KK   L+ VF CPFCNH+K V CT+ RKE I  L C +C   Y   IN L+EPID+Y++WIDECE VN ++G
Sbjct:    1 MGKRKSSAKPAPKKKMEKLESVFNCPFCNHEKSVNCTIDRKEMIGELTCCICQEKYSTAINNLSEPIDIYSEWIDECEKVNDMDG 85
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig76.15173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVV5_ECTSI6.410e-5687.62Transcription elongation factor 1 homolog n=2 Tax=... [more]
A0A485LI04_9STRA3.890e-2659.52Transcription elongation factor 1 homolog n=6 Tax=... [more]
A0A024U4B4_9STRA3.890e-2660.98Transcription elongation factor 1 homolog n=3 Tax=... [more]
A0A6A3LNQ0_9STRA8.480e-2654.72Transcription elongation factor 1 homolog n=1 Tax=... [more]
M4B5A6_HYAAE1.850e-2559.76Transcription elongation factor 1 homolog n=16 Tax... [more]
A0A329SPD8_9STRA1.880e-2562.20Transcription elongation factor 1 homolog n=2 Tax=... [more]
A0A835ZFT2_9STRA1.420e-2462.20Transcription elongation factor 1 homolog n=1 Tax=... [more]
H3HB17_PHYRM5.870e-2362.20Uncharacterized protein n=15 Tax=Phytophthora TaxI... [more]
A0A0G4J6E9_PLABS9.070e-2257.14Transcription elongation factor 1 homolog n=1 Tax=... [more]
UPI001CC465E21.810e-2154.12transcription elongation factor 1 homolog n=2 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig76contigC-linearis_contig76:291212..293919 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score191.8
Seed ortholog evalue1.6e-46
Seed eggNOG ortholog2880.D7FVV5
Preferred nameELOF1
KEGG koko:K13617
Hectar predicted targeting categoryother localisation
GOsGO:0000993,GO:0001098,GO:0001099,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006325,GO:0006338,GO:0006351,GO:0006354,GO:0006355,GO:0006366,GO:0006368,GO:0006725,GO:0006807,GO:0006996,GO:0008023,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019899,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0040029,GO:0043167,GO:0043169,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044877,GO:0045815,GO:0045893,GO:0045935,GO:0046483,GO:0046872,GO:0046914,GO:0048096,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051276,GO:0060255,GO:0065007,GO:0070013,GO:0070063,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.ASPIC UnbV domain protein
EggNOG OGsCOG4888@1,KOG3214@2759
Ec32 ortholog descriptionTranscription elongation factor 1
Ec32 orthologEc-01_002290.1
EC3.1.1.89
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Exons4
Model size1468
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig76.15173.1prot_C-linearis_contig76.15173.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig76 291475..292869 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930443.6075144-UTR-C-linearis_contig76:291211..2912461622930443.6075144-UTR-C-linearis_contig76:291211..291246Chordaria linearis ClinC8C monoicousUTRC-linearis_contig76 291212..291246 +
1690881072.2207837-UTR-C-linearis_contig76:291211..2912461690881072.2207837-UTR-C-linearis_contig76:291211..291246Chordaria linearis ClinC8C monoicousUTRC-linearis_contig76 291212..291246 +
1622930443.6228366-UTR-C-linearis_contig76:291409..2914741622930443.6228366-UTR-C-linearis_contig76:291409..291474Chordaria linearis ClinC8C monoicousUTRC-linearis_contig76 291410..291474 +
1690881072.2334359-UTR-C-linearis_contig76:291409..2914741690881072.2334359-UTR-C-linearis_contig76:291409..291474Chordaria linearis ClinC8C monoicousUTRC-linearis_contig76 291410..291474 +
1622930443.690778-UTR-C-linearis_contig76:292869..2939191622930443.690778-UTR-C-linearis_contig76:292869..293919Chordaria linearis ClinC8C monoicousUTRC-linearis_contig76 292870..293919 +
1690881072.2834635-UTR-C-linearis_contig76:292869..2939191690881072.2834635-UTR-C-linearis_contig76:292869..293919Chordaria linearis ClinC8C monoicousUTRC-linearis_contig76 292870..293919 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930443.6399114-CDS-C-linearis_contig76:291474..2915871622930443.6399114-CDS-C-linearis_contig76:291474..291587Chordaria linearis ClinC8C monoicousCDSC-linearis_contig76 291475..291587 +
1690881072.2450547-CDS-C-linearis_contig76:291474..2915871690881072.2450547-CDS-C-linearis_contig76:291474..291587Chordaria linearis ClinC8C monoicousCDSC-linearis_contig76 291475..291587 +
1622930443.6564283-CDS-C-linearis_contig76:292273..2923441622930443.6564283-CDS-C-linearis_contig76:292273..292344Chordaria linearis ClinC8C monoicousCDSC-linearis_contig76 292274..292344 +
1690881072.2626302-CDS-C-linearis_contig76:292273..2923441690881072.2626302-CDS-C-linearis_contig76:292273..292344Chordaria linearis ClinC8C monoicousCDSC-linearis_contig76 292274..292344 +
1622930443.6786819-CDS-C-linearis_contig76:292735..2928691622930443.6786819-CDS-C-linearis_contig76:292735..292869Chordaria linearis ClinC8C monoicousCDSC-linearis_contig76 292736..292869 +
1690881072.2733827-CDS-C-linearis_contig76:292735..2928691690881072.2733827-CDS-C-linearis_contig76:292735..292869Chordaria linearis ClinC8C monoicousCDSC-linearis_contig76 292736..292869 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig76.15173.1

>prot_C-linearis_contig76.15173.1 ID=prot_C-linearis_contig76.15173.1|Name=mRNA_C-linearis_contig76.15173.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=106bp
MGRRKKSTKKIVIKKNTTLDKVFKCPFCNHDKVVECTMKRKEKIARLRCR
MCDISYEMGINYLTEPIDVYTDWIDECEAVNAVEGAAEESKNDEVFIDDQ
EIAEG*
back to top

mRNA from alignment at C-linearis_contig76:291212..293919+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig76.15173.1 ID=mRNA_C-linearis_contig76.15173.1|Name=mRNA_C-linearis_contig76.15173.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2708bp|location=Sequence derived from alignment at C-linearis_contig76:291212..293919+ (Chordaria linearis ClinC8C monoicous)
AGCTGTGCTTGGCTGGACCCGTGGCGTATCTCACTGTGAGTGACGATTTT
TTTACTCCGTGACATAGTGGCTGCTTTACCTTCGCTGGTACCTACTCTCT
GTTTCCCTCCTTACTTTTCGCCCTCTAAAATATCCCCTCCCTTCTCTCTC
TTTCTACACATCTACACGCAACCACCACGCCGTCCTGCTGCAAGGCAGCA
GAGAACCGGGGAGCAAGGCACCGAAAGAAAGCGGAAGAGCGTACATAAAA
GCCTGTTTCCACCATGGGGCGGCGAAAGAAGAGCACGAAGAAGATTGTCA
TCAAGAAAAACACCACCCTGGACAAGGTGTTCAAGTGCCCCTTCTGCAAC
CACGACAAGGTGGTGGAGTGCACCATGTGAGTGACCACACAGCACAGCTT
TTAACACCAAAAGACAGCCATCCATCTGCCAGCACCTGCCCGTAAAATCC
ACTCGCGTGTGTAGAATAACTAGACGTATGCTTGTGCAAACCATTATTGT
TTTGGTTCAGCCTAATTTCCGGGCTTCAACACCATGAACAGGAGTGATTT
GTCTAGACAGCAGTGTATGTTCTTTCCGTGGACTCTTACTTGTACGGGTT
CTTACGAGCTAGGCAGGGGCAGCGATGGGGTTTTCGCATGTTTCGCCCTC
GGTTTGTGGTATGTATTTGTGCCTCTGTGTCTGTGGATGATTATGCTCTG
GGAAGACATCCCCGACTGGAAGCTTGAGCTTTTGTGCGAACTTGCCAGTG
TCGGTGGATAACGTTCCAACCGCAGTTAGTTCCGTCGCGCATTTTTGGTG
TTTCACCATCCACGGCGGCAGTGTGGTGACGAAAGAGAGAGAGAAACCCC
TCAAAACGAGGAATCCGCGAACGCGTTGTTATCTACGTTGTCTCCGCAAC
GCGCGAAATGCTGTATCCACACCTGGCTTAGTTGTAGTTCTGCTGGAAGC
GCGTGTCTGTTCGTCGCTCCCCGTGTCATCATCCAGCATGCATACTTCGT
ACATCATCTTTGACTGACTGCTGTCTCCTTGTTCGTGTTCTCGTCTGTTT
TTGCCGCGGCAGGAAACGGAAGGAGAAAATCGCGCGGCTACGATGCCGGA
TGTGCGATATCAGCTACGAAATGGGAATCAATTGTGAGCGGCCGCATCCT
TTGTTTCGTCGCGTATTTGCGTGCGTGGGTTTTGTTTTTGTACAACATAT
ATCTCCGGTTTCCATGTGTATTGAAAGCAGGACACCGATCACTCCCCATG
AACAGGCGAATGGAATGCAAGGGGCAAAGTAATCCATCCTTATTACGAGA
TATTTTGGTGCCTGTTGGATCACTTGCAGCATCATCTCGCCCTCGAGCGC
AATTTCATTCGGTGGGCCTTGCACTGCTGTGGGTACATACGTGGCAATTT
TCACGATAAATTTAGAGCAACTCCCATGTCGTCTGACCCCCCTCCCTCCC
CGCCCTCCATCGCCCCACTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTTACACCCATGCACGAATCAGACCTGACCGAGCCCATCGACGTGTAC
ACAGACTGGATCGATGAGTGTGAGGCGGTCAACGCGGTGGAAGGGGCGGC
GGAGGAAAGTAAGAATGACGAGGTGTTCATCGACGATCAAGAGATAGCGG
AGGGTTAAGCTAGGTGAAGCTCAACATGTAGAACATATTTGACGAGAGAG
ATCATCGTTGCCACATGTAGCTTGCGTGGGCTAGCTGATGTTGTATGTAC
GGGGAAAATAAGCTTGATTTTGAAGTGAGTATGTTTTCCTAGGATTGAGC
CGTTTGTGGCATTGATTAATCGGGCTTTATATTGAGTGCTGTTCATTCGC
TTCCGGTCGTAAGCACTCTTTCTTGGATAAGGAGAATGGTGTTTGCGTCT
CGACATCATTAAAGGATTTCGGCTACATTCAGGAAATGGCGTCGCCACGG
CCACGATGCGCAGCCAAGCAGCAAGTACGTGGTGACACGCGTTCCTTGCT
CAGGCCTCTTTCCTTTAGAGCTTTGACGTCGCAGGATCACTCTAGCTGGA
CGTTCTCCTGTGGTGATGTGCGGGTATGTCGCCTGTAGAAAGATCCCCGT
GTTACACCGATTGCTTTCGGGGGGGGTTGCCATGGCGGTTGGTCATCGCG
GGCATGCGTGTGGAGCGTGGTCGTGACCTTCCGGCGATACTGTCAGCCCT
CGTGTAGACTATGATGCGGCCGGGGATGAAGCGGAGCAACAACAGAGCGT
CGTCGTCTACTATGGCGGCTGGCACCATCGCCGGAAGGTACCGACCGCGC
TCCACGATGTAGCTCCCGGTCGGGAGATTCGTAATGTGTACCTGGTGCCG
ACCTGTCGTCCGCGATGTGTTCGTCGTCGTGATTCATGTAGATCTTGTGC
TGTTCTCCGACCTTGTTGGTTACTTGACCTTGTTGAGGGAAACGAGCTCG
GAGAATGGTACAAGATATATCATACCCTATATAGATCACAATGGACGCAC
ATCGCGGACGACACTGCGTAGGCCCTGCCGCGTCGTGGTGGGTGGGAGTG
TGCGACATGTGTGGCCCTGGATGGTGTTGCCGGAGCAGGACAGTGATGCT
CGAGTGTGAGGAACGGTTCTGTGTGTACCAGCGCCGGCGAGTGAAGTCAG
TTGATTGGGTCGAATTCGTGCCACGAATACGGAAAACAGGAGACGCGACA
TCTCGAAC
back to top

Coding sequence (CDS) from alignment at C-linearis_contig76:291212..293919+

>mRNA_C-linearis_contig76.15173.1 ID=mRNA_C-linearis_contig76.15173.1|Name=mRNA_C-linearis_contig76.15173.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at C-linearis_contig76:291212..293919+ (Chordaria linearis ClinC8C monoicous)
ATGGGGCGGCGAAAGAAGAGCACGAAGAAGATTGTCATCAAGAAAAACAC
CACCCTGGACAAGGTGTTCAAGTGCCCCTTCTGCAACCACGACAAGGTGG
TGGAGTGCACCATATGGGGCGGCGAAAGAAGAGCACGAAGAAGATTGTCA
TCAAGAAAAACACCACCCTGGACAAGGTGTTCAAGTGCCCCTTCTGCAAC
CACGACAAGGTGGTGGAGTGCACCATGAAACGGAAGGAGAAAATCGCGCG
GCTACGATGCCGGATGTGCGATATCAGCTACGAAATGGGAATCAATTGAA
ACGGAAGGAGAAAATCGCGCGGCTACGATGCCGGATGTGCGATATCAGCT
ACGAAATGGGAATCAATTACCTGACCGAGCCCATCGACGTGTACACAGAC
TGGATCGATGAGTGTGAGGCGGTCAACGCGGTGGAAGGGGCGGCGGAGGA
AAGTAAGAATGACGAGGTGTTCATCGACGATCAAGAGATAGCGGAGGGTT
AAACCTGACCGAGCCCATCGACGTGTACACAGACTGGATCGATGAGTGTG
AGGCGGTCAACGCGGTGGAAGGGGCGGCGGAGGAAAGTAAGAATGACGAG
GTGTTCATCGACGATCAAGAGATAGCGGAGGGTTAA
back to top