prot_C-linearis_contig74.15040.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig74.15040.1
Unique Nameprot_C-linearis_contig74.15040.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length333
Homology
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BLAST of mRNA_C-linearis_contig74.15040.1 vs. uniprot
Match: D8LD38_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD38_ECTSI)

HSP 1 Score: 180 bits (457), Expect = 2.830e-52
Identity = 119/295 (40.34%), Postives = 141/295 (47.80%), Query Frame = 0 
Query:   30 NTLGGVDLDTTLPLTTAAFWQFAHSQDFYRSTRQQSATVRQEVVDLSNWEQADGPTLRKEKDKQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRSSRAGRVFRRLAPSEAQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLWHREARLNYAISSPFGSSDAAVVQEHTLLELDPDQQEAXXXXXXXXXGVGKGICYSETDCITGFPMIPGDLWVKKTFLVTPAD--GDPERVRVRLGVVVEEIELPRRLQFLSKRVSTIIGNGGRKQAEKWLAEMITSGSPAASA 322
            +T+G + LDTTLP+  A FW+FAHS+DFYRSTRQQSA VRQ+VVDL++WEQADG                                                                                                                      +  EHTLL+   D+ +          G G GICY+E+DCITGFPM+PGDL VK TFLVTP +  G  ERVRVR+GVVVEEIELP+RL+FLSKRVS I+GNGGRKQAEKWL EM+  GSPAA A
Sbjct:   39 STVGTIGLDTTLPMDAATFWRFAHSKDFYRSTRQQSAVVRQQVVDLTSWEQADG----------------------------------------------------------------------------------------------------------------------IDAEHTLLD---DRHQKG--------GGGGGICYTESDCITGFPMVPGDLSVKTTFLVTPVEDGGHEERVRVRVGVVVEEIELPKRLRFLSKRVSKIVGNGGRKQAEKWLGEMVKEGSPAADA 204
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BLAST of mRNA_C-linearis_contig74.15040.1 vs. uniprot
Match: A0A6H5K1L1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1L1_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 2.070e-46
Identity = 93/143 (65.03%), Postives = 103/143 (72.03%), Query Frame = 0 
Query:  180 LWHREARLNYAISSPFGSSDAAVVQEHTLLELDPDQQEAXXXXXXXXXGVGKGICYSETDCITGFPMIPGDLWVKKTFLVTPAD--GDPERVRVRLGVVVEEIELPRRLQFLSKRVSTIIGNGGRKQAEKWLAEMITSGSPAA 320
            L  R A LNYAI+SPF SSDA VVQEHTLL  D   QE          G G GICY+E DCITGFPM+PGDL VK TFLVT  D  G  ERV VR+ VVV+E ELP+RL+FLSKRVS I+G+GGRKQAEKWL EM+  GSP A
Sbjct:   63 LLQRRATLNYAITSPFDSSDAKVVQEHTLL--DDRHQE----------GGGGGICYTERDCITGFPMVPGDLSVKPTFLVTRVDDGGHTERVHVRVEVVVKETELPKRLRFLSKRVSDIVGDGGRKQAEKWLGEMVKEGSPVA 193
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig74.15040.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LD38_ECTSI2.830e-5240.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K1L1_9PHAE2.070e-4665.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..25
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 9..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..8
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 21..25
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 26..332
NoneNo IPR availableSIGNALP_EUKSignalP-TMSignalP-TMcoord: 1..25
score: 0.524
NoneNo IPR availableTMHMMTMhelixcoord: 7..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig74contigC-linearis_contig74:659014..661675 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig74.15040.1mRNA_C-linearis_contig74.15040.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig74 658986..664840 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig74.15040.1 ID=prot_C-linearis_contig74.15040.1|Name=mRNA_C-linearis_contig74.15040.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=333bp
MGALNRSWALLGFFLCFFCYAGTVAFTLGNTLGGVDLDTTLPLTTAAFWQ
FAHSQDFYRSTRQQSATVRQEVVDLSNWEQADGPTLRKEKDKQADKDNQP
DSTSPPQPQPPPPPPPAPPVARARVRSSRAGRVFRRLAPSEAQRQPQPPQ
QQQRQPQPPPRQQQPQQQQQQQQQQPRPRLWHREARLNYAISSPFGSSDA
AVVQEHTLLELDPDQQEAGDDDDNGGGGVGKGICYSETDCITGFPMIPGD
LWVKKTFLVTPADGDPERVRVRLGVVVEEIELPRRLQFLSKRVSTIIGNG
GRKQAEKWLAEMITSGSPAASAAASSTAAVDA*
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