prot_C-linearis_contig74.15009.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig74.15009.1
Unique Nameprot_C-linearis_contig74.15009.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length306
Homology
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BLAST of mRNA_C-linearis_contig74.15009.1 vs. uniprot
Match: D7G8Y5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Y5_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 3.750e-34
Identity = 108/271 (39.85%), Postives = 129/271 (47.60%), Query Frame = 0 
Query:   59 EYITVADTTGFPIA-GCYRGTTNHD-DGGVFSYANYEGKVVGERTSQPMVVWHMHIGTDESPLG------IGIGEIGEPPSPMCTSRSGAG-------VEGWECNDGATF---------EELVTCGCSPSKRQA---SERYHAAWVDAQGGSTNKGGGLVRGSSGGRRNHMKGGDSRDKGV-ALLAGASGGPGVSRVLA--SGEFHSFWMWVIIAGGIAGGIVLCLIGWYIMNPFFCQKDPPADPNAQP-EDAAPQAPKTAFQPWGASAPP 298
            EYI VA TT F  A GCYR        GG   Y       V E   Q  V         ++P G      IGI    E    +C+  S +        V  WEC   A            ELVTCGC+  + +       Y A           +G   V+    G R  ++G  S  KGV  + A A+G   VSR L   +G+ H FW+WVI+AG IAG IVLC +GWYI NPFFCQK P  +P+A P EDAAPQAPK  FQPWGASAPP
Sbjct:   29 EYIHVARTTEFKAAEGCYRREEGSGPSGGAAVY-------VKEAADQGAVY---QTTVSKAPRGNSHQWRIGIQRASESSRVLCSGLSVSASMDSPTLVNEWECGSSAGNLSARRFIFGNELVTCGCTSPQEEGLVLPTEYLA-----------RGEKRVKSHKTGARGSIRGRGSSGKGVHGVFADATGVALVSRALEEDAGDLHGFWIWVIVAGSIAGLIVLCCVGWYIRNPFFCQKSPLPNPDAPPGEDAAPQAPKAIFQPWGASAPP 278
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig74.15009.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8Y5_ECTSI3.750e-3439.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 39..235
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 260..305
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 34..38
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..38
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 22..33
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 236..259
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..38
score: 0.515
NoneNo IPR availableTMHMMTMhelixcoord: 236..258

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig74contigC-linearis_contig74:412952..417884 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig74.15009.1mRNA_C-linearis_contig74.15009.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig74 411598..417915 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig74.15009.1 ID=prot_C-linearis_contig74.15009.1|Name=mRNA_C-linearis_contig74.15009.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=306bp
MHLRRSGEVEKRHTMRDISSMATPLLVLCLMTWRCCHGAKAGSYDVDPGV
VAGHPFPCEYITVADTTGFPIAGCYRGTTNHDDGGVFSYANYEGKVVGER
TSQPMVVWHMHIGTDESPLGIGIGEIGEPPSPMCTSRSGAGVEGWECNDG
ATFEELVTCGCSPSKRQASERYHAAWVDAQGGSTNKGGGLVRGSSGGRRN
HMKGGDSRDKGVALLAGASGGPGVSRVLASGEFHSFWMWVIIAGGIAGGI
VLCLIGWYIMNPFFCQKDPPADPNAQPEDAAPQAPKTAFQPWGASAPPGA
SAPPK*
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