prot_C-linearis_contig73.14975.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig73.14975.1
Unique Nameprot_C-linearis_contig73.14975.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length176
Homology
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BLAST of mRNA_C-linearis_contig73.14975.1 vs. uniprot
Match: D7G3G4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3G4_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 9.750e-39
Identity = 85/181 (46.96%), Postives = 102/181 (56.35%), Query Frame = 0 
Query:    1 VEAIRLDRFDAKSFSWLIKVLQCFEGEKILNERRVFYNGPLRLLRARRFPGSLYFHSKKGITPLLKLVCINRRAGDSFFMCISSAQDTHAQVFTGRVLASDPAIVTADPPR-------------GPPRYAVIFGESCERSGRPAVEGDGINGAGGRVLTAPDWVSVYGECVGFWLHAWVYR 168
            V+AIRL R DAKSF WL +     +  ++L ER   Y GP          GS +F S +GIT LL  V  N R GD F +C S   D  AQ+ TG ++A+D +   +   R              PP  A+IFGESCER+GRPA E DGINGAG RVL+  DWVSVYGEC    L AWVYR
Sbjct:   31 VKAIRLGRVDAKSFFWLTRGFTSTKATELLAERGGRYAGPRPASHTSACTGSPFFSSGQGITSLLSSVSANGRVGDRFVLCFSDGVDACAQMITGCLVATDGSGDCSTGSRYHDDNTYHLGGSSPPPCSAIIFGESCERAGRPAGERDGINGAGARVLSVLDWVSVYGECSESLLCAWVYR 211
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig73.14975.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3G4_ECTSI9.750e-3946.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig73contigC-linearis_contig73:808634..809692 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig73.14975.1mRNA_C-linearis_contig73.14975.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig73 808634..809692 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig73.14975.1 ID=prot_C-linearis_contig73.14975.1|Name=mRNA_C-linearis_contig73.14975.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=176bp
VEAIRLDRFDAKSFSWLIKVLQCFEGEKILNERRVFYNGPLRLLRARRFP
GSLYFHSKKGITPLLKLVCINRRAGDSFFMCISSAQDTHAQVFTGRVLAS
DPAIVTADPPRGPPRYAVIFGESCERSGRPAVEGDGINGAGGRVLTAPDW
VSVYGECVGFWLHAWVYRRKDEGAK*
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