mRNA_C-linearis_contig73.14975.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig73.14975.1
Unique NamemRNA_C-linearis_contig73.14975.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig73.14975.1 vs. uniprot
Match: D7G3G4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3G4_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 9.750e-39
Identity = 85/181 (46.96%), Postives = 102/181 (56.35%), Query Frame = 1 
Query:    1 VEAIRLDRFDAKSFSWLIKVLQCFEGEKILNERRVFYNGPLRLLRARRFPGSLYFHSKKGITPLLKLVCINRRAGDSFFMCISSAQDTHAQVFTGRVLASDPAIVTADPPR-------------GPPRYAVIFGESCERSGRPAVEGDGINGAGGRVLTAPDWVSVYGECVGFWLHAWVYR 504
            V+AIRL R DAKSF WL +     +  ++L ER   Y GP          GS +F S +GIT LL  V  N R GD F +C S   D  AQ+ TG ++A+D +   +   R              PP  A+IFGESCER+GRPA E DGINGAG RVL+  DWVSVYGEC    L AWVYR
Sbjct:   31 VKAIRLGRVDAKSFFWLTRGFTSTKATELLAERGGRYAGPRPASHTSACTGSPFFSSGQGITSLLSSVSANGRVGDRFVLCFSDGVDACAQMITGCLVATDGSGDCSTGSRYHDDNTYHLGGSSPPPCSAIIFGESCERAGRPAGERDGINGAGARVLSVLDWVSVYGECSESLLCAWVYR 211
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig73.14975.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3G4_ECTSI9.750e-3946.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig73contigC-linearis_contig73:808634..809692 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_004510.1
Exons2
Model size528
Cds size528
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930405.746845-CDS-C-linearis_contig73:808633..8088341622930405.746845-CDS-C-linearis_contig73:808633..808834Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 808634..808834 +
1690881053.398115-CDS-C-linearis_contig73:808633..8088341690881053.398115-CDS-C-linearis_contig73:808633..808834Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 808634..808834 +
1622930405.7647877-CDS-C-linearis_contig73:809365..8096921622930405.7647877-CDS-C-linearis_contig73:809365..809692Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 809366..809692 +
1690881053.408829-CDS-C-linearis_contig73:809365..8096921690881053.408829-CDS-C-linearis_contig73:809365..809692Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 809366..809692 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig73.14975.1prot_C-linearis_contig73.14975.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig73 808634..809692 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig73.14975.1

>prot_C-linearis_contig73.14975.1 ID=prot_C-linearis_contig73.14975.1|Name=mRNA_C-linearis_contig73.14975.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=176bp
VEAIRLDRFDAKSFSWLIKVLQCFEGEKILNERRVFYNGPLRLLRARRFP
GSLYFHSKKGITPLLKLVCINRRAGDSFFMCISSAQDTHAQVFTGRVLAS
DPAIVTADPPRGPPRYAVIFGESCERSGRPAVEGDGINGAGGRVLTAPDW
VSVYGECVGFWLHAWVYRRKDEGAK*
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mRNA from alignment at C-linearis_contig73:808634..809692+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig73.14975.1 ID=mRNA_C-linearis_contig73.14975.1|Name=mRNA_C-linearis_contig73.14975.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1059bp|location=Sequence derived from alignment at C-linearis_contig73:808634..809692+ (Chordaria linearis ClinC8C monoicous)
GTGGAAGCTATCCGCCTAGATCGGTTCGACGCCAAGAGCTTCTCCTGGCT
CATTAAGGTATTGCAATGCTTCGAGGGGGAGAAGATCCTGAATGAGAGAA
GAGTTTTCTACAACGGGCCGCTGCGGCTTTTACGGGCACGGCGCTTCCCG
GGATCTCTGTACTTCCATTCCAAAAAAGGCATCACTCCCCTGCTTAAATT
GGTGAGTATGAAACAGCTTGTCACAAAAGTCGCAGCGAATTCTACTCAAA
GCATGGTCTGTGATGCAGTACCAACACCGCTCGACCAAATCAGTTATTAT
TTGGTTTAGTTCCGGTCGAGGTAGGACCGTACCGTGCTTGAACAGACGGC
GACGGTCGCGGAGTCATAACGGAGACTGCGGCTCTCGAAAGCGGTGTACA
CATTGTCGTCCGTGTACTATGAATGACGGGGTGTCTGTTTCGACGGCATC
ATACGTGCACTACTACACTCGACACACCAACACACCCCGCCCGACCCAAC
TCCGCACCTGCCTGTCTGTGTCTCGCCTTGGAGTCTCAGTCTAGATTCAA
CGCAAAGTTCCCCATAATGAAGGAGCTAGAAATACTTATTTGAGAATAGA
CAGACGAAATACACGTGAAGCATCAATCAATACGCCTACCCTTGCGACAA
AGGCGCAAAACATTCCACCACCAATCATGGCCTCGCAACCAAAGCTAAGC
GCTCCTTCCCCCCCCAAACCCCTCGATATTAGGTATGTATCAACCGCCGC
GCCGGCGACAGCTTCTTCATGTGTATTTCCAGCGCCCAGGACACCCACGC
GCAGGTATTCACCGGACGCGTGTTGGCATCTGACCCAGCAATCGTCACGG
CGGACCCACCACGTGGACCTCCTCGGTACGCGGTCATCTTCGGAGAGAGC
TGCGAGAGATCGGGGAGGCCGGCCGTCGAGGGAGACGGGATCAACGGGGC
TGGGGGTCGTGTTCTAACCGCCCCAGACTGGGTGAGCGTCTACGGGGAGT
GCGTAGGCTTCTGGCTTCACGCATGGGTGTACCGCCGCAAGGACGAGGGA
GCCAAATGA
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Coding sequence (CDS) from alignment at C-linearis_contig73:808634..809692+

>mRNA_C-linearis_contig73.14975.1 ID=mRNA_C-linearis_contig73.14975.1|Name=mRNA_C-linearis_contig73.14975.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1056bp|location=Sequence derived from alignment at C-linearis_contig73:808634..809692+ (Chordaria linearis ClinC8C monoicous)
GTGGAAGCTATCCGCCTAGATCGGTTCGACGCCAAGAGCTTCTCCTGGCT
CATTAAGGTATTGCAATGCTTCGAGGGGGAGAAGATCCTGAATGAGAGAA
GAGTTTTCTACAACGGGCCGCTGCGGCTTTTACGGGCACGGCGCTTCCCG
GGATCTCTGTACTTCCATTCCAAAAAAGGCATCACTCCCCTGCTTAAATT
GGTGGAAGCTATCCGCCTAGATCGGTTCGACGCCAAGAGCTTCTCCTGGC
TCATTAAGGTATTGCAATGCTTCGAGGGGGAGAAGATCCTGAATGAGAGA
AGAGTTTTCTACAACGGGCCGCTGCGGCTTTTACGGGCACGGCGCTTCCC
GGGATCTCTGTACTTCCATTCCAAAAAAGGCATCACTCCCCTGCTTAAAT
TGGTATGTATCAACCGCCGCGCCGGCGACAGCTTCTTCATGTGTATTTCC
AGCGCCCAGGACACCCACGCGCAGGTATTCACCGGACGCGTGTTGGCATC
TGACCCAGCAATCGTCACGGCGGACCCACCACGTGGACCTCCTCGGTACG
CGGTCATCTTCGGAGAGAGCTGCGAGAGATCGGGGAGGCCGGCCGTCGAG
GGAGACGGGATCAACGGGGCTGGGGGTCGTGTTCTAACCGCCCCAGACTG
GGTGAGCGTCTACGGGGAGTGCGTAGGCTTCTGGCTTCACGCATGGGTGT
ACCGCCGCAAGGACGAGGGAGCCAAATGAGTATGTATCAACCGCCGCGCC
GGCGACAGCTTCTTCATGTGTATTTCCAGCGCCCAGGACACCCACGCGCA
GGTATTCACCGGACGCGTGTTGGCATCTGACCCAGCAATCGTCACGGCGG
ACCCACCACGTGGACCTCCTCGGTACGCGGTCATCTTCGGAGAGAGCTGC
GAGAGATCGGGGAGGCCGGCCGTCGAGGGAGACGGGATCAACGGGGCTGG
GGGTCGTGTTCTAACCGCCCCAGACTGGGTGAGCGTCTACGGGGAGTGCG
TAGGCTTCTGGCTTCACGCATGGGTGTACCGCCGCAAGGACGAGGGAGCC
AAATGA
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