prot_C-linearis_contig73.14969.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig73.14969.1
Unique Nameprot_C-linearis_contig73.14969.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length380
Homology
BLAST of mRNA_C-linearis_contig73.14969.1 vs. uniprot
Match: A0A6H5L1H9_9PHAE (E3 ubiquitin-protein ligase RNF170 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1H9_9PHAE)

HSP 1 Score: 290 bits (743), Expect = 1.820e-92
Identity = 167/293 (57.00%), Postives = 196/293 (66.89%), Query Frame = 0
Query:    1 MEGLPLDVLLLVAVAVVGIVSLVAYIWRKLGSNQVGDASPGGAAEGAXXXXXXXXAPGR-ANHPGGECPICLAVEVASPVQTNCGHWFCSRRATRLNVAVKGAMASCILGYYDGLGRVRIKCPLCRQDVTMLHPAAEDTPSPKAPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPTSLETQERITRFNERNSGKRRSPWQVAEDAPLLLRRLWADLRRGDTQVFAELIRRGVQLQLLVVALYILSPVDVMPESLLGIAGLVDDLVLAIVLLLHITTVYRTILLSWERSRAS 292
            MEGLPLDV+LLV++ +V + SLV YI RKL SN   D    GAA G          PGR A HPGGECPICL++EV +PVQTNCGHWFC+R               CIL YYD  GRVRI+CP+CRQ+VTMLH AA D  +                                     S E QE I+RFN+RNSG+ RSPWQV EDAPLLLRRLW+DL RGDT+VF EL+RRGVQLQL V ALYILSP+DV+PESL+GIAGL+DDLV+ + LLLH+T+VYRT+LLSWERSRA+
Sbjct:    1 MEGLPLDVILLVSIGIVAVTSLVVYISRKLTSN---DEDEEGAATGIDGSNNDTT-PGRLARHPGGECPICLSIEVETPVQTNCGHWFCAR---------------CILSYYDQGGRVRIRCPMCRQEVTMLHGAAGDAQA----------------AGDTDQAHDARAESAPAATTGSPEIQEEISRFNDRNSGRWRSPWQVIEDAPLLLRRLWSDLSRGDTRVFGELMRRGVQLQLFVAALYILSPIDVIPESLVGIAGLLDDLVVVVFLLLHLTSVYRTVLLSWERSRAA 258          
BLAST of mRNA_C-linearis_contig73.14969.1 vs. uniprot
Match: D7FX72_ECTSI (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX72_ECTSI)

HSP 1 Score: 175 bits (443), Expect = 6.440e-49
Identity = 98/170 (57.65%), Postives = 118/170 (69.41%), Query Frame = 0
Query:  123 LCRQDVTMLHPAAEDTPSPKAPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPTSLETQERITRFNERNSGKRRSPWQVAEDAPLLLRRLWADLRRGDTQVFAELIRRGVQLQLLVVALYILSPVDVMPESLLGIAGLVDDLVLAIVLLLHITTVYRTILLSWERSRAS 292
            +CRQ+VTML+ AA D  +                                     S E QE I+RFN+RNSG+ RSPWQV EDAPLLLRRLW+DL RGDT+VF EL+RRGVQLQL V ALYILSP+DV+PESL+GIAGL+DDLV+ + LLLH+T+VYRT+LLSWERSRA+
Sbjct:    1 MCRQEVTMLYGAAGDAQA----------------AGDTDEAHDARAGSAPATTTGSPEIQEEISRFNDRNSGRWRSPWQVIEDAPLLLRRLWSDLSRGDTRVFGELMRRGVQLQLFVAALYILSPIDVIPESLVGIAGLLDDLVVVVFLLLHLTSVYRTVLLSWERSRAA 154          
BLAST of mRNA_C-linearis_contig73.14969.1 vs. uniprot
Match: A0A2Z7CY40_9LAMI (E3 ubiquitin-protein ligase RNF170 n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7CY40_9LAMI)

HSP 1 Score: 97.4 bits (241), Expect = 2.410e-20
Identity = 71/221 (32.13%), Postives = 103/221 (46.61%), Query Frame = 0
Query:   67 CPICLAVEVASPVQTNCGHWFCSRRATRLNVAVKGAMASCILGYYD-GLGRVRIKCPLCRQDVTMLHPA-AEDTPSPKAPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPTSLETQERITRFNERNSGKRRSPWQVAEDAPLLLRRLWADLRRGDTQVFAELIRRGVQLQLLVVALYILSPVDVMPESLLGIAGLVDDLVLAIVLLLHITTVYRTILLS 285
            C IC +     P Q NC HWFC                 CIL  ++ G      KCPLCR+++T+L P+ A    S    TA                                 E    I R+N +   +     Q  +D P LLRRL  D+R    +    +IR  V L ++V A+Y+LSPVD++PE LLG+ GL+DDL++ ++ +LH+ ++YR +LLS
Sbjct:   10 CSICHS-NFNIPCQANCSHWFCG---------------GCILQVWEHGAALHPCKCPLCRREITLLVPSEASSRQSHMVNTA---------------------------------EILRSIERYNRQYGERSNGVMQRVQDLPFLLRRLLRDIR-DPQRTLPVVIRARVYLAMVVSAIYVLSPVDIIPEGLLGVIGLLDDLIIVLICVLHVASLYRAVLLS 180          
BLAST of mRNA_C-linearis_contig73.14969.1 vs. uniprot
Match: UPI0020095D38 (E3 ubiquitin-protein ligase RNF170-like n=3 Tax=Salvia TaxID=21880 RepID=UPI0020095D38)

HSP 1 Score: 95.1 bits (235), Expect = 1.530e-19
Identity = 70/221 (31.67%), Postives = 102/221 (46.15%), Query Frame = 0
Query:   66 ECPICLAVEVASPVQTNCGHWFCSRRATRLNVAVKGAMASCILGYYDGLGRVR-IKCPLCRQDVTMLHPAAEDTPSPKAPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPTSLETQERITRFNERNSGKRRSPWQVAEDAPLLLRRLWADLRRGDTQVFAELIRRGVQLQLLVVALYILSPVDVMPESLLGIAGLVDDLVLAIVLLLHITTVYRTILLS 285
            EC IC       P Q NCGHWFC R               CIL  +D    +R  KCPLCR+++T+L P+     +  A                                    E  +RI  +N +      S  Q   D P LLRRL  D+     +    ++R  V L +++ A+Y+LSPVD++PE+LLGI GL+DDL++  +  L++  +YRT+L+S
Sbjct:    9 ECSICQQ-NFQIPCQANCGHWFCGR---------------CILQVWDFGHALRPCKCPLCRREITLLVPSEAHRTADGA------------------------------------EILQRIEHYNRQFGAHPNSLMQRMYDLPFLLRRLTRDIM-DPQRALPLVVRARVYLAMILSAMYVLSPVDIIPEALLGIIGLLDDLIVVFMCFLYVAALYRTVLVS 176          
BLAST of mRNA_C-linearis_contig73.14969.1 vs. uniprot
Match: A0A2G5DUJ5_AQUCA (E3 ubiquitin-protein ligase RNF170 n=1 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5DUJ5_AQUCA)

HSP 1 Score: 92.4 bits (228), Expect = 1.630e-18
Identity = 67/210 (31.90%), Postives = 95/210 (45.24%), Query Frame = 0
Query:   78 PVQTNCGHWFCSRRATRLNVAVKGAMASCILG-YYDGLGRVRIKCPLCRQDVTMLHPAAEDTPSPKAPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPTSLETQERITRFNERNSGKRRSPWQVAEDAPLLLRRLWADLRRGDTQVFAELIRRGVQLQLLVVA-LYILSPVDVMPESLLGIAGLVDDLVLAIVLLLHITTVYRTILLS 285
            P Q NC HWFCS               +CILG ++ G      KCP+CR+ +T+L P+ E                                       P   E  E I R+N    G  RS  Q   D P  L+RL  +L   D Q    L+ R      ++++ +YILSP+D++PE +LGI GL+DD+++ ++  LHI  +YRT LLS
Sbjct:   20 PCQANCSHWFCS---------------NCILGVWHHGSALQPCKCPICRRSITLLIPSEESQ--------------------------------GHHDDPVVSEALESIQRYNRLFGGGSRSLSQRVRDLPFFLKRLLRELM--DPQRSLPLVFRARMFFAMILSGIYILSPIDIIPEGILGIVGLLDDILIGLIFFLHIAAIYRTTLLS 180          
BLAST of mRNA_C-linearis_contig73.14969.1 vs. uniprot
Match: UPI001FB083FF (E3 ubiquitin-protein ligase RNF170 n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB083FF)

HSP 1 Score: 91.3 bits (225), Expect = 4.290e-18
Identity = 68/218 (31.19%), Postives = 97/218 (44.50%), Query Frame = 0
Query:   67 CPICLAVEVASPVQTNCGHWFCSRRATRLNVAVKGAMASCILGYYD-GLGRVRIKCPLCRQDVTMLHPAAEDTPSPKAPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPTSLETQERITRFNERNSGKRRSPWQVAEDAPLLLRRLWADLRRGDTQVFAELIRRGVQLQLLVVALYILSPVDVMPESLLGIAGLVDDLVLAIVLLLHITTVYRTIL 283
            C IC      +P Q NC HWFC R               CIL  +D G      KCPLCR+++T+L P+   +    +                                    E   RI R+N     +  S  Q  +D P LLRRL  DL      +   ++R  V L +LV  +YI+SPVD++PE +LGI GL+DD ++A++  LH+  +YR+ L
Sbjct:   10 CSICHN-NFTTPCQANCSHWFCGR---------------CILQVWDHGSSFQPCKCPLCRREITLLIPSRASSNECNSSEV--------------------------------AEVFGRIERYNRHFGQQTNSLVQRMQDLPFLLRRLTRDLMNPQRSL-PFVLRMRVYLAMLVSVIYIISPVDIIPEGILGIIGLLDDAIIALICFLHVAALYRSAL 178          
BLAST of mRNA_C-linearis_contig73.14969.1 vs. uniprot
Match: A0A6I9UDJ8_SESIN (E3 ubiquitin-protein ligase RNF170 n=1 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9UDJ8_SESIN)

HSP 1 Score: 90.9 bits (224), Expect = 5.920e-18
Identity = 67/220 (30.45%), Postives = 99/220 (45.00%), Query Frame = 0
Query:   67 CPICLAVEVASPVQTNCGHWFCSRRATRLNVAVKGAMASCILGYYD-GLGRVRIKCPLCRQDVTMLHPAAEDTPSPKAPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPTSLETQERITRFNERNSGKRRSPWQVAEDAPLLLRRLWADLRRGDTQVFAELIRRGVQLQLLVVALYILSPVDVMPESLLGIAGLVDDLVLAIVLLLHITTVYRTILLS 285
            C IC A     P Q NC HWFC                SCIL  ++ G      KCPLCR+++T+L P+   +                                         E  +RI R+N     +     Q  +D P LL+RL  D+      +   +IR  V L +LV A+Y++SPVD++PE+LLGI GL+DDL++  +  LH+  +YR +L++
Sbjct:   10 CSICHA-NFHIPCQANCSHWFCG---------------SCILQVWEHGAALHPCKCPLCRREITLLVPSEASS--------------------------------RRRHMSDVSEILQRIERYNRLYGERSNGLMQRMQDLPFLLKRLLRDVMDPQRSL-PFVIRARVYLAMLVSAIYVISPVDIIPEALLGIFGLLDDLIIVFICFLHVAALYRAVLVA 180          
BLAST of mRNA_C-linearis_contig73.14969.1 vs. uniprot
Match: A0A1S3YLS3_TOBAC (E3 ubiquitin-protein ligase RNF170 n=1 Tax=Nicotiana tabacum TaxID=4097 RepID=A0A1S3YLS3_TOBAC)

HSP 1 Score: 90.5 bits (223), Expect = 8.180e-18
Identity = 67/219 (30.59%), Postives = 97/219 (44.29%), Query Frame = 0
Query:   67 CPICLAVEVASPVQTNCGHWFCSRRATRLNVAVKGAMASCILGYYD-GLGRVRIKCPLCRQDVTMLHPAAEDTPSPKAPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPTSLETQERITRFNERNSGKRRSPWQVAEDAPLLLRRLWADLRRGDTQVFAELIRRGVQLQLLVVALYILSPVDVMPESLLGIAGLVDDLVLAIVLLLHITTVYRTILL 284
            C IC       P Q+NC HWFC               A+CIL  +D G      KCPLCR+ +T+L P+   +   + P                                   E   RI  +N        S +Q   D P LLRRL  D+      +   +IR  V L +++  +Y+LSPVD++PE +LGI GL+DDL++  +  LH+  +YR++LL
Sbjct:   10 CSICHG-NFHVPCQSNCSHWFC---------------ANCILQVWDHGSALQACKCPLCRRPITLLVPSDSASRLHRDPVVP--------------------------------EVLRRIEHYNRHFGQHNSSLFQRVRDLPFLLRRLLRDMTDPQRSL-PFVIRARVYLAVILSGIYVLSPVDIIPEGILGIIGLLDDLIIMFICFLHVAALYRSVLL 179          
BLAST of mRNA_C-linearis_contig73.14969.1 vs. uniprot
Match: A0A7J7CF81_TRIWF (E3 ubiquitin-protein ligase RNF170 n=1 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7CF81_TRIWF)

HSP 1 Score: 90.1 bits (222), Expect = 1.150e-17
Identity = 69/219 (31.51%), Postives = 98/219 (44.75%), Query Frame = 0
Query:   67 CPICLAVEVASPVQTNCGHWFCSRRATRLNVAVKGAMASCIL-GYYDGLGRVRIKCPLCRQDVTMLHPAAEDTPSPKAPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPTSLETQERITRFNERNSGKRRSPWQVAEDAPLLLRRLWADLRRGDTQVFAEL-IRRGVQLQLLVVALYILSPVDVMPESLLGIAGLVDDLVLAIVLLLHITTVYRTIL 283
            C IC      +P Q NC HWFC                +CIL  ++ G      KCPLCR+ +T+L PA                                         PT  E   +I  +N    G  R   Q  +D P LLRRL  ++   D Q    L I+  V + +++  +YI+SPVD++PE +LGI GL+DDLV+A+V  LH+  +YR++L
Sbjct:   10 CSICHG-SFNTPCQANCSHWFCG---------------NCILLVWHHGSALQPCKCPLCRRQITLLVPAEASLSE--------------------------------RHNPTVAEILGKIETYNRYFGGHTRGLIQRLQDLPFLLRRLLREML--DPQRSLPLVIKARVYIAMILSVVYIISPVDIIPEGILGIVGLLDDLVIALVCFLHVAAIYRSVL 178          
BLAST of mRNA_C-linearis_contig73.14969.1 vs. uniprot
Match: A0A0B0PUN2_GOSAR (E3 ubiquitin-protein ligase RNF170 n=16 Tax=Malvaceae TaxID=3629 RepID=A0A0B0PUN2_GOSAR)

HSP 1 Score: 89.0 bits (219), Expect = 2.960e-17
Identity = 64/220 (29.09%), Postives = 97/220 (44.09%), Query Frame = 0
Query:   67 CPICLAVEVASPVQTNCGHWFCSRRATRLNVAVKGAMASCI-LGYYDGLGRVRIKCPLCRQDVTMLHPAAEDTPSPKAPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPTSLETQERITRFNERNSGKRRSPWQVAEDAPLLLRRLWADLRRGDTQVFAELIRRGVQLQLLVVALYILSPVDVMPESLLGIAGLVDDLVLAIVLLLHITTVYRTILLS 285
            C IC       P Q NC HWFC                +CI L +  G      KCPLCR+ +T+L P                                          P   E  E++ ++N    G+     Q  +D P LLRRL  ++     +    +IR  + L + + A+YI SP+D++PE++LG+ GL+DDL++A+V  LH+ T+YR++L S
Sbjct:   10 CSICHGY-FNVPCQANCSHWFCG---------------NCIMLVWQHGSPFQTCKCPLCRRQITLLVPGEASL--------------------------------RERHNPAVAEVLEKVEKYNRYFGGQSNGLIQRLQDLPFLLRRLLREIT-DPQRTLPLVIRARIYLAMFLSAIYIFSPIDIIPEAILGVVGLLDDLLIALVGFLHVATIYRSVLYS 180          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig73.14969.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L1H9_9PHAE1.820e-9257.00E3 ubiquitin-protein ligase RNF170 n=1 Tax=Ectocar... [more]
D7FX72_ECTSI6.440e-4957.65RING-type E3 ubiquitin transferase n=1 Tax=Ectocar... [more]
A0A2Z7CY40_9LAMI2.410e-2032.13E3 ubiquitin-protein ligase RNF170 n=1 Tax=Dorcoce... [more]
UPI0020095D381.530e-1931.67E3 ubiquitin-protein ligase RNF170-like n=3 Tax=Sa... [more]
A0A2G5DUJ5_AQUCA1.630e-1831.90E3 ubiquitin-protein ligase RNF170 n=1 Tax=Aquileg... [more]
UPI001FB083FF4.290e-1831.19E3 ubiquitin-protein ligase RNF170 n=1 Tax=Impatie... [more]
A0A6I9UDJ8_SESIN5.920e-1830.45E3 ubiquitin-protein ligase RNF170 n=1 Tax=Sesamum... [more]
A0A1S3YLS3_TOBAC8.180e-1830.59E3 ubiquitin-protein ligase RNF170 n=1 Tax=Nicotia... [more]
A0A7J7CF81_TRIWF1.150e-1731.51E3 ubiquitin-protein ligase RNF170 n=1 Tax=Tripter... [more]
A0A0B0PUN2_GOSAR2.960e-1729.09E3 ubiquitin-protein ligase RNF170 n=16 Tax=Malvac... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 67..124
e-value: 0.0014
score: 27.9
IPR010652Domain of unknown function DUF1232PFAMPF06803DUF1232coord: 238..268
e-value: 1.1E-5
score: 25.2
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 58..153
e-value: 2.0E-10
score: 42.1
NoneNo IPR availablePANTHERPTHR22894:SF5E3 UBIQUITIN-PROTEIN LIGASE RNF170-LIKE PROTEIN (DUF 1232)coord: 65..285
NoneNo IPR availablePANTHERPTHR22894UNCHARACTERIZEDcoord: 65..285
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 28..227
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..27
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 228..245
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 246..264
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 265..283
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 284..379
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 64..131
NoneNo IPR availableTMHMMTMhelixcoord: 265..284
NoneNo IPR availableTMHMMTMhelixcoord: 319..341
NoneNo IPR availableTMHMMTMhelixcoord: 5..27
NoneNo IPR availableTMHMMTMhelixcoord: 228..250

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig73contigC-linearis_contig73:688601..691673 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig73.14969.1mRNA_C-linearis_contig73.14969.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig73 688601..693298 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig73.14969.1 ID=prot_C-linearis_contig73.14969.1|Name=mRNA_C-linearis_contig73.14969.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=380bp
MEGLPLDVLLLVAVAVVGIVSLVAYIWRKLGSNQVGDASPGGAAEGAGGA
GGGDAAPGRANHPGGECPICLAVEVASPVQTNCGHWFCSRRATRLNVAVK
GAMASCILGYYDGLGRVRIKCPLCRQDVTMLHPAAEDTPSPKAPTAAAAA
AATSSNTATDGGTIAPTPPPPPPPRPTSLETQERITRFNERNSGKRRSPW
QVAEDAPLLLRRLWADLRRGDTQVFAELIRRGVQLQLLVVALYILSPVDV
MPESLLGIAGLVDDLVLAIVLLLHITTVYRTILLSWERSRASPAAAAAAA
SAVPPGQGSLANSPMGAGLAAVVAVAAGAAATCAGAGAGVAAAAAVATGA
AAAAAASEAGSSSSSGARGGMPPPLARDW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR010652DUF1232
IPR013083Znf_RING/FYVE/PHD