prot_C-linearis_contig73.14956.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig73.14956.1
Unique Nameprot_C-linearis_contig73.14956.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length300
Homology
BLAST of mRNA_C-linearis_contig73.14956.1 vs. uniprot
Match: A0A6H5JKY9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKY9_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 1.180e-9
Identity = 99/340 (29.12%), Postives = 134/340 (39.41%), Query Frame = 0
Query:    3 LTDVSAVDGIGFNLISLHALSLSMTITIDADGVHLPTPRLTFPRNNTGSSLYATRVP--FLEIENALNAVRVPPGFPSGFPPP--SNLPGDGPPDPSLPPCFGGGGGSEGAPAYGVPPTGHAGVVPASVGFQPINDADVVLLDAPRDEPLCG-----------------APMESFPPALAGVV-------PPIXXXXXXXXXXVTLTDGSFCQGPRTLDGLSLALNVVGVLLDEKDM-------DGLHLGEQLDAPW---VNDDEAE----FWAQTFDQLDGSEAGYDCVLSAFVSAAIAPKRRPFMVGPQTRKFEINYYHRCSGHLCEFLLRETAKQQG 300
            LTDV  V GI FNL SLH       I +D  GVHL   RL+F  ++ G SL ATR+P  + + +   + V  PP      PP   + L    PP PS      G G   G P+   P TGHAGVVP++                                           +  F PALA  +       P +          +   +    Q    L  +S+ L+V G++  +  +       D L + E +  P    V  DE +    F A+   Q D         L+ F     AP    F VG  T   +IN +H  +GH+ EFL+RETAKQQG
Sbjct:   50 LTDVYVVPGISFNLFSLHQTQKKHRIMLDERGVHLFGGRLSFAYSDIGCSLSATRLPPSYRDGDVIPSTVVPPPVVRQASPPGVGTGLFAQNPPPPSQ---ISGSGAGYG-PSSSFPSTGHAGVVPSTXXXXXXXXXXXXXXXXXXXSTTSXXXXXXXXXXXXXXXXXXTSIRDFQPALAAAIASSDVLSPSVVNPNVSREIEIMPLES---QDNLPLMDMSMFLDV-GLMNGQDSVPPGDFCPDPLGVCESVKPPVAFAVMQDELDVLRDFVAECRVQQDVGPPSLSHALAIF-----APGGPAFTVGKPTSTIDINLFHASTGHVNEFLMRETAKQQG 376          
BLAST of mRNA_C-linearis_contig73.14956.1 vs. uniprot
Match: A0A6H5JU31_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU31_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 6.960e-8
Identity = 100/348 (28.74%), Postives = 135/348 (38.79%), Query Frame = 0
Query:    3 LTDVSAVDGIGFNLISLHALSLSMTITIDADGVHLPTPRLTFPRNNTGSSLYATRVPFLEIENAL-NAVRVPPGFPSGFPPPSNLPGDGPPDPSLPPCFGGGGGSEGAPAYGVPPTGHAG------------------------------VVPASVGFQPINDADVVLLDAPRDEPLCGAPMESFPPALAGVVPPIXXXXXXXXXXVTLTDGS-------FCQGPRTLDGLSLALNVVGVLLDEKDM--------DGLHLGEQLDAPW----VNDDEAEFWAQTFDQLDGSEAGYDCVLSAFVSAAIAPKRRPFMVGPQTRKFEINYYHRCSGHLCEFLLRETAKQQG 300
            ++DV  V GI FNL SLH       I +D  GVHL   RL+F  ++ G SL+ATR+P      A+ ++   PP   +   PPS   G     PSL  C                                                    V+P  +   P  D D      P  +P+  A +ES     + +V P           V LTD         F Q    +  +S+ L+V   L+D KD         D L L E  D P     V  D+ E  +    + +  +A     LS  + A IAP   PF VG  T   +IN +H  +GH+ EFL+RETAKQQG
Sbjct:   49 MSDVYVVPGITFNLFSLHHTQRKQRIVLDETGVHLFDGRLSFAYSDVGCSLWATRLPQDYCGRAVTSSPDAPPRVSAQASPPSIGTGFVAATPSL--CQSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLP--ICAFPSVDVDPTPTTIPDFQPVITAAVES-----SSIVSP---------PAVELTDFREIEINPLFSQDALPIMDMSMFLDVG--LMDGKDTVPPGDFFPDALELAESSDPPHLAFTVQHDDLEVLSGFLSECNEQQAAAPPSLSHAL-AIIAPGASPFSVGKSTPTIDINLFHASTGHVNEFLMRETAKQQG 375          
BLAST of mRNA_C-linearis_contig73.14956.1 vs. uniprot
Match: A0A6H5KCR3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCR3_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.680e-7
Identity = 96/342 (28.07%), Postives = 134/342 (39.18%), Query Frame = 0
Query:    3 LTDVSAVDGIGFNLISLHALSLSMTITIDADGVHLPTPRLTFPRNNTGSSLYATRVP-FLEIENALNAVRVPPGFPSGFPPPSNLPG---DGPPDPSLPPCFGGGGGSEGAPAYGVPPTGHAGVVPASVGFQPINDADVVLLDAPRDEP-----------------LCGAPMESFPPALAGVV-------PPIXXXXXXXXXXVTLTDGSFCQGPRTLDGLSLALNVVGVLLDEKDM-------DGLHLGEQLDAPWVNDDEAEFWAQTFDQLDGSEAGY-DCVLSAFVS--------AAIAPKRRPFMVGPQTRKFEINYYHRCSGHLCEFLLRETAKQQG 300
            LTDV  V GI FNL SLH    +  I +D  GVHL   RL+F  ++ G  L ATR+P      + + +  VPP       PP  + G     PP PS     G G G    P+   P TG AGVVP++                                      +    +  F PALA  +       P +          +   +    Q    L  +S+ L+V G++  +  +       D L + E +  P         +A   D+LD  +    +C +   V         A IAP    F VG  T   +IN +H  +GH+ EFL+RETAKQQG
Sbjct:   50 LTDVYVVPGISFNLYSLHQTQKTHRIMLDERGVHLFGGRLSFAYSDIGCYLSATRLPPSYRDGDVIPSTVVPPPVVRQASPPGVVTGLFAQKPPPPSQ--ILGSGAGY--GPSSSFPFTGPAGVVPSTXXXXXXXXXXXXXXXXXXXSTTSXXXXXXXXXXXXXXDVVPTSIRDFQPALAAAIASSDVLSPSVVNPNVSREIEIMPLES---QDNLPLMDMSMFLDV-GLMNGQDSVPPGDFYPDPLGVCESVKPPVA-------FAVMQDELDALKNFVAECRVKQDVGPPSLSHALAIIAPGGPAFTVGKPTSTIDINLFHASTGHVNEFLMRETAKQQG 376          
BLAST of mRNA_C-linearis_contig73.14956.1 vs. uniprot
Match: A0A6H5KKW9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKW9_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 7.230e-6
Identity = 37/93 (39.78%), Postives = 48/93 (51.61%), Query Frame = 0
Query:  212 DGLHLGEQLDAPW----VNDDEAEFWAQTFDQLDGSEAGYDCVLSAFVSAAIAPKRRPFMVGPQTRKFEINYYHRCSGHLCEFLLRETAKQQG 300
            D L L E  D P     V  D+ E  +    + +  +A     LS  + A IAP   PF VG  T   +IN +H  +GH+ EFL+RETAKQQG
Sbjct:   26 DALELAESADPPHLAFTVQHDDLEVLSGFLSECNEQQAAAPPSLSHAL-ATIAPGASPFSVGKSTPTIDINLFHASTGHVNEFLMRETAKQQG 117          
BLAST of mRNA_C-linearis_contig73.14956.1 vs. uniprot
Match: A0A6H5K3I1_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3I1_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 1.330e-5
Identity = 46/128 (35.94%), Postives = 62/128 (48.44%), Query Frame = 0
Query:  185 FCQGPRTLDGLSLALNVVGVLLDEKDM--------DGLHLGEQLDAPW----VNDDEAEFWAQTFDQLDGSEAGYDCVLSAFVSAAIAPKRRPFMVGPQTRKFEINYYHRCSGHLCEFLLRETAKQQG 300
            F Q    +  +S+ L+V   L+D KD         D L L E  D P     V  D+ E  +    + +  +A     LS  + A IAP   PF VG  T   +IN +H  +GH+ EFL+RETAKQQG
Sbjct:  922 FSQDALPIMDMSMFLDVG--LMDGKDTVPPGDFFPDALELAESADPPHLAFTVQHDDLEVLSGFLSECNEQQAAAPPSLSHAL-AIIAPGASPFSVGKSTPTIDINLFHASTGHVNEFLMRETAKQQG 1046          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig73.14956.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JKY9_9PHAE1.180e-929.12Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JU31_9PHAE6.960e-828.74Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KCR3_9PHAE1.680e-728.07Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KKW9_9PHAE7.230e-639.78Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5K3I1_9PHAE1.330e-535.94Integrase catalytic domain-containing protein n=5 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig73contigC-linearis_contig73:489157..490056 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig73.14956.1mRNA_C-linearis_contig73.14956.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig73 489024..490056 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig73.14956.1 ID=prot_C-linearis_contig73.14956.1|Name=mRNA_C-linearis_contig73.14956.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=300bp
MLLTDVSAVDGIGFNLISLHALSLSMTITIDADGVHLPTPRLTFPRNNTG
SSLYATRVPFLEIENALNAVRVPPGFPSGFPPPSNLPGDGPPDPSLPPCF
GGGGGSEGAPAYGVPPTGHAGVVPASVGFQPINDADVVLLDAPRDEPLCG
APMESFPPALAGVVPPIGSFPPAASGVVTLTDGSFCQGPRTLDGLSLALN
VVGVLLDEKDMDGLHLGEQLDAPWVNDDEAEFWAQTFDQLDGSEAGYDCV
LSAFVSAAIAPKRRPFMVGPQTRKFEINYYHRCSGHLCEFLLRETAKQQG
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