prot_C-linearis_contig72.14858.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig72.14858.1
Unique Nameprot_C-linearis_contig72.14858.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length210
Homology
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BLAST of mRNA_C-linearis_contig72.14858.1 vs. uniprot
Match: D7G4T6_ECTSI (Plastid protein-export protein secB, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4T6_ECTSI)

HSP 1 Score: 231 bits (590), Expect = 3.060e-74
Identity = 132/207 (63.77%), Postives = 145/207 (70.05%), Query Frame = 0 
Query:    8 LAAALAACASLSLSCFAFVVVPTGPSLASCSSVYRKVHYHGEGSQPSSRHRGSNSCNGRGL----PAPRRTIVLQAAAD-GSEQVRDQKXXXXXXXXXXEREAARSKQLNIACNDVVRTILNGNPTNEKERAEALRQRLMAQKDDLVSPGDDMSALFFDNLLLVCQHELHPDIGILRGSYGKAWHTILHYIEDAGWQLTDPPFSISG 209
            +AA LA+C  LSL C  F+VVP   S     S YR+         P+S  R    C G       PA    I LQA  D  SEQ R+Q           + EAARSKQLNIACNDVVRTIL+GNPTNEKERAEALRQRL++QKDDLVSP DDMSALFFDNLLLVC+HELHPDIGILRG YGKAW+TILHY+EDAGWQLTDPPFSISG
Sbjct:    1 MAAVLASCVFLSLPCSGFIVVPANSSPL---SAYRRAAVR----PPASSSRRLARCEGGSWVGERPAAVNAIALQATTDDNSEQAREQPTQEASLAAARQ-EAARSKQLNIACNDVVRTILDGNPTNEKERAEALRQRLISQKDDLVSPEDDMSALFFDNLLLVCEHELHPDIGILRGQYGKAWNTILHYVEDAGWQLTDPPFSISG 199
[Close]
BLAST of mRNA_C-linearis_contig72.14858.1 vs. uniprot
Match: A0A836CL25_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL25_9STRA)

HSP 1 Score: 114 bits (285), Expect = 1.070e-28
Identity = 49/101 (48.51%), Postives = 70/101 (69.31%), Query Frame = 0 
Query:  109 KQLNIACNDVVRTILNGNPTNEKERAEALRQRLMAQKDDLVSPGDDMSALFFDNLLLVCQHELHPDIGILRGSYGKAWHTILHYIEDAGWQLTDPPFSISG 209
            K LNIACNDV++TIL  +        + +++RL+  K+ LV   D  S LF++NL+ VC+H LHP +  L+G Y  AW ++LH+IEDAGWQLT+PPF ++G
Sbjct:   56 KHLNIACNDVIKTILKADAEKLDSDMQGIKERLIRDKELLVVTDDPQSELFYNNLVCVCEHSLHPRLHELKGRYASAWKSMLHWIEDAGWQLTEPPFRVNG 156
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig72.14858.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4T6_ECTSI3.060e-7463.77Plastid protein-export protein secB, putative n=2 ... [more]
A0A836CL25_9STRA1.070e-2848.51Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 77..97
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..209
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 21..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 8..20
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..22
score: 6.0
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..24
score: 0.818

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig72contigC-linearis_contig72:161850..163074 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig72.14858.1mRNA_C-linearis_contig72.14858.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig72 161450..163101 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig72.14858.1 ID=prot_C-linearis_contig72.14858.1|Name=mRNA_C-linearis_contig72.14858.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=210bp
MLPRMMRLAAALAACASLSLSCFAFVVVPTGPSLASCSSVYRKVHYHGEG
SQPSSRHRGSNSCNGRGLPAPRRTIVLQAAADGSEQVRDQKKQQEQQPTE
EEREAARSKQLNIACNDVVRTILNGNPTNEKERAEALRQRLMAQKDDLVS
PGDDMSALFFDNLLLVCQHELHPDIGILRGSYGKAWHTILHYIEDAGWQL
TDPPFSISG*
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