mRNA_C-linearis_contig72.14858.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig72.14858.1
Unique NamemRNA_C-linearis_contig72.14858.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig72.14858.1 vs. uniprot
Match: D7G4T6_ECTSI (Plastid protein-export protein secB, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4T6_ECTSI)

HSP 1 Score: 232 bits (591), Expect = 3.000e-72
Identity = 132/207 (63.77%), Postives = 145/207 (70.05%), Query Frame = 1 
Query:   49 LAAALAACASLSLSCFAFVVVPTGPSLASCSSVYRKVHYHGEGSQPSSRHRGSNSCNGRGL----PAPRRTIVLQAAAD-GSEQVRDQKXXXXXXXXXXEREAARSKQLNIACNDVVRTILNGNPTNEKERAEALRQRLMAQKDDLVSPGDDMSALFFDNLLLVCQHELHPDIGILRGSYGKAWHTILHYIEDAGWQLTDPPFSISG 654
            +AA LA+C  LSL C  F+VVP   S     S YR+         P+S  R    C G       PA    I LQA  D  SEQ R+Q           + EAARSKQLNIACNDVVRTIL+GNPTNEKERAEALRQRL++QKDDLVSP DDMSALFFDNLLLVC+HELHPDIGILRG YGKAW+TILHY+EDAGWQLTDPPFSISG
Sbjct:    1 MAAVLASCVFLSLPCSGFIVVPANSSPL---SAYRRAAVR----PPASSSRRLARCEGGSWVGERPAAVNAIALQATTDDNSEQAREQPTQEASLAAARQ-EAARSKQLNIACNDVVRTILDGNPTNEKERAEALRQRLISQKDDLVSPEDDMSALFFDNLLLVCEHELHPDIGILRGQYGKAWNTILHYVEDAGWQLTDPPFSISG 199
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BLAST of mRNA_C-linearis_contig72.14858.1 vs. uniprot
Match: A0A836CL25_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL25_9STRA)

HSP 1 Score: 114 bits (286), Expect = 2.440e-27
Identity = 49/101 (48.51%), Postives = 70/101 (69.31%), Query Frame = 1 
Query:  352 KQLNIACNDVVRTILNGNPTNEKERAEALRQRLMAQKDDLVSPGDDMSALFFDNLLLVCQHELHPDIGILRGSYGKAWHTILHYIEDAGWQLTDPPFSISG 654
            K LNIACNDV++TIL  +        + +++RL+  K+ LV   D  S LF++NL+ VC+H LHP +  L+G Y  AW ++LH+IEDAGWQLT+PPF ++G
Sbjct:   56 KHLNIACNDVIKTILKADAEKLDSDMQGIKERLIRDKELLVVTDDPQSELFYNNLVCVCEHSLHPRLHELKGRYASAWKSMLHWIEDAGWQLTEPPFRVNG 156
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig72.14858.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4T6_ECTSI3.000e-7263.77Plastid protein-export protein secB, putative n=2 ... [more]
A0A836CL25_9STRA2.440e-2748.51Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig72contigC-linearis_contig72:161450..163101 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionPlastid protein-export protein secB, putative
Ec32 orthologEc-20_000420.1
Exons2
Model size1057
Cds size630
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig72.14858.1prot_C-linearis_contig72.14858.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig72 161850..163074 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930380.103395-UTR-C-linearis_contig72:161449..1618491622930380.103395-UTR-C-linearis_contig72:161449..161849Chordaria linearis ClinC8C monoicousUTRC-linearis_contig72 161450..161849 -
1690881040.182545-UTR-C-linearis_contig72:161449..1618491690881040.182545-UTR-C-linearis_contig72:161449..161849Chordaria linearis ClinC8C monoicousUTRC-linearis_contig72 161450..161849 -
1622930380.1541398-UTR-C-linearis_contig72:163074..1631011622930380.1541398-UTR-C-linearis_contig72:163074..163101Chordaria linearis ClinC8C monoicousUTRC-linearis_contig72 163075..163101 -
1690881040.2098234-UTR-C-linearis_contig72:163074..1631011690881040.2098234-UTR-C-linearis_contig72:163074..163101Chordaria linearis ClinC8C monoicousUTRC-linearis_contig72 163075..163101 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930380.1223378-CDS-C-linearis_contig72:161849..1622451622930380.1223378-CDS-C-linearis_contig72:161849..162245Chordaria linearis ClinC8C monoicousCDSC-linearis_contig72 161850..162245 -
1690881040.1925325-CDS-C-linearis_contig72:161849..1622451690881040.1925325-CDS-C-linearis_contig72:161849..162245Chordaria linearis ClinC8C monoicousCDSC-linearis_contig72 161850..162245 -
1622930380.1373398-CDS-C-linearis_contig72:162840..1630741622930380.1373398-CDS-C-linearis_contig72:162840..163074Chordaria linearis ClinC8C monoicousCDSC-linearis_contig72 162841..163074 -
1690881040.2012887-CDS-C-linearis_contig72:162840..1630741690881040.2012887-CDS-C-linearis_contig72:162840..163074Chordaria linearis ClinC8C monoicousCDSC-linearis_contig72 162841..163074 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig72.14858.1

>prot_C-linearis_contig72.14858.1 ID=prot_C-linearis_contig72.14858.1|Name=mRNA_C-linearis_contig72.14858.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=210bp
MLPRMMRLAAALAACASLSLSCFAFVVVPTGPSLASCSSVYRKVHYHGEG
SQPSSRHRGSNSCNGRGLPAPRRTIVLQAAADGSEQVRDQKKQQEQQPTE
EEREAARSKQLNIACNDVVRTILNGNPTNEKERAEALRQRLMAQKDDLVS
PGDDMSALFFDNLLLVCQHELHPDIGILRGSYGKAWHTILHYIEDAGWQL
TDPPFSISG*
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mRNA from alignment at C-linearis_contig72:161450..163101-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig72.14858.1 ID=mRNA_C-linearis_contig72.14858.1|Name=mRNA_C-linearis_contig72.14858.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1652bp|location=Sequence derived from alignment at C-linearis_contig72:161450..163101- (Chordaria linearis ClinC8C monoicous)
GCCTGATCGCCGAAACTGATCACTCTCATGCTGCCCCGGATGATGCGATT
GGCAGCCGCGCTGGCTGCGTGTGCGTCCCTGTCACTTTCGTGCTTCGCAT
TTGTCGTGGTACCGACAGGTCCGTCTCTAGCATCCTGCAGTTCGGTGTAT
CGAAAAGTTCATTATCATGGTGAGGGGAGCCAGCCCAGCAGCAGGCACCG
GGGGAGCAACAGCTGTAACGGGCGAGGCTTGCCAGCACCACGAAGAACGA
TCGTGCTGCAGGTGCGGGAAGTAAATGTTTGGCCACTCCTTTGGGCTTTT
GACACGATTGAGCACCTTCTATTCCGCCCACGTAATCTCCACTTGAGAGA
GTTTCGACAGGGTGCATGCCCGATCATGTTGTTCATGATGTCATTCCGCG
TCGCTTGCCACGCAAGGAAGACAAGGGGTTTACAGGCTCGATGCTGGAAG
CTCTGGTTGACGTCAGGATATTGGTGCACATAATTTGGAAAATGGGTTTG
TGGGGTGACTGTCGCAACTCCATTTGACCCATCCTGCTTCATCCAACGCT
GAACGGCGATGTGCAGGCTTGTTCGAGCACCAGCAGCAGTGTGGCGGCGG
AAAACTGCTTATGATTGCACATGCCAAATGCGGGGCCTTCCGAACTGCTG
TCGATTTTTTTCGCGGAATTCACGGAGGTCGCCCTGCGCAAGTGATTCCC
TCCTCACGCGCGCTTCCGCGCCAGTCTGCTCGCGTGTAGAAAAGATAATG
GCCTCACGGCGGAACACACGATTCTATTGCGAAACACTTGTGGAACCAAT
GCCAACAACACCAACACCCGTGGACACCCCGAACGTGTCTTTGTGGCTTG
AGACAGGCAGCGGCCGATGGGAGCGAGCAGGTCCGCGACCAAAAGAAGCA
GCAGGAGCAACAGCCGACGGAAGAGGAACGAGAGGCGGCCAGAAGCAAGC
AGCTCAACATCGCCTGCAACGACGTCGTCCGAACCATCCTGAACGGCAAC
CCCACCAACGAGAAGGAGAGGGCCGAGGCCTTGCGGCAAAGGCTGATGGC
GCAGAAGGACGATCTGGTTTCTCCCGGGGACGACATGTCGGCGCTCTTCT
TCGACAACCTGCTGCTGGTGTGCCAGCACGAGCTCCATCCCGATATCGGC
ATCCTGCGGGGGAGCTACGGGAAAGCGTGGCACACAATCTTGCACTATAT
CGAAGACGCGGGGTGGCAGCTCACGGATCCACCGTTTTCCATCTCGGGGT
AGATTTTGAGGATTCCCACCCCGAGATAATCGCGGTTACTTTTGGCATAG
AGTCGGGTTGCCTGCGCAGCTCAAGAGTATGGAGGTTGTCGTCATAGAGA
GGTGCTGTGGAATTGCCGCATGTAGCAGTTGTGTCCTGTGCGTGGTTTTG
GTCTAGTGGGCACCAGCATTGATTTGTAATGTGTTCAGCAGTTATGGGTC
TTAAGTTCTAGATCGGAGCGGATTACTCCGTGTTTTGTTGGTGGGATCTT
TACGTGTGTGTGTGTGCTGTAATGCTTGAAGCTTGTGTCTTGTCAAGGCA
GGCGGGTTGATGGAGCGAAAATGGCAGTTTTTGTGGAAGACAGATGTGAC
ATATGAGAACCAGAGCTGCACATACCAGAATAAAGGAAGATTGGATCTTA
AT
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Coding sequence (CDS) from alignment at C-linearis_contig72:161450..163101-

>mRNA_C-linearis_contig72.14858.1 ID=mRNA_C-linearis_contig72.14858.1|Name=mRNA_C-linearis_contig72.14858.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1260bp|location=Sequence derived from alignment at C-linearis_contig72:161450..163101- (Chordaria linearis ClinC8C monoicous)
ATGCTGCCCCGGATGATGCGATTGGCAGCCGCGCTGGCTGCGTGTGCGTC
CCTGTCACTTTCGTGCTTCGCATTTGTCGTGGTACCGACAGGTCCGTCTC
TAGCATCCTGCAGTTCGGTGTATCGAAAAGTTCATTATCATGGTGAGGGG
AGCCAGCCCAGCAGCAGGCACCGGGGGAGCAACAGCTGTAACGGGCGAGG
CTTGCCAGCACCACGAAGAACGATCGTGCTGCAGATGCTGCCCCGGATGA
TGCGATTGGCAGCCGCGCTGGCTGCGTGTGCGTCCCTGTCACTTTCGTGC
TTCGCATTTGTCGTGGTACCGACAGGTCCGTCTCTAGCATCCTGCAGTTC
GGTGTATCGAAAAGTTCATTATCATGGTGAGGGGAGCCAGCCCAGCAGCA
GGCACCGGGGGAGCAACAGCTGTAACGGGCGAGGCTTGCCAGCACCACGA
AGAACGATCGTGCTGCAGGCAGCGGCCGATGGGAGCGAGCAGGTCCGCGA
CCAAAAGAAGCAGCAGGAGCAACAGCCGACGGAAGAGGAACGAGAGGCGG
CCAGAAGCAAGCAGCTCAACATCGCCTGCAACGACGTCGTCCGAACCATC
CTGAACGGCAACCCCACCAACGAGAAGGAGAGGGCCGAGGCCTTGCGGCA
AAGGCTGATGGCGCAGAAGGACGATCTGGTTTCTCCCGGGGACGACATGT
CGGCGCTCTTCTTCGACAACCTGCTGCTGGTGTGCCAGCACGAGCTCCAT
CCCGATATCGGCATCCTGCGGGGGAGCTACGGGAAAGCGTGGCACACAAT
CTTGCACTATATCGAAGACGCGGGGTGGCAGCTCACGGATCCACCGTTTT
CCATCTCGGGGTAGGCAGCGGCCGATGGGAGCGAGCAGGTCCGCGACCAA
AAGAAGCAGCAGGAGCAACAGCCGACGGAAGAGGAACGAGAGGCGGCCAG
AAGCAAGCAGCTCAACATCGCCTGCAACGACGTCGTCCGAACCATCCTGA
ACGGCAACCCCACCAACGAGAAGGAGAGGGCCGAGGCCTTGCGGCAAAGG
CTGATGGCGCAGAAGGACGATCTGGTTTCTCCCGGGGACGACATGTCGGC
GCTCTTCTTCGACAACCTGCTGCTGGTGTGCCAGCACGAGCTCCATCCCG
ATATCGGCATCCTGCGGGGGAGCTACGGGAAAGCGTGGCACACAATCTTG
CACTATATCGAAGACGCGGGGTGGCAGCTCACGGATCCACCGTTTTCCAT
CTCGGGGTAG
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