prot_C-linearis_contig7.14628.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_C-linearis_contig7.14628.1
Unique Name	prot_C-linearis_contig7.14628.1
Type	polypeptide
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length	311

Homology

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BLAST of mRNA_C-linearis_contig7.14628.1 vs. uniprot
Match: D7FTY3_ECTSI (S5 DRBM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTY3_ECTSI)

HSP 1 Score: 455 bits (1171), Expect = 2.570e-158
Identity = 243/289 (84.08%), Postives = 262/289 (90.66%), Query Frame = 0

Query:   24 SVQGSKKAPSRSVSMTGKDKPDPIDLADLIMSGTSYKDAVKGTEFDALDAETAQEYEESIRRLKALQENRLEEYLEEKGDTDLLDKFRTVKGKPKSSEEVGSTSPVAPPPPKK--TVEMAQGKWAEILIHTDRVTKTVKGGMEIQYRALVAVGNLNGVGGFAIGKADSPAVAITEASRKAKLLPNLVYVERYKQASLCQDLMGKHNGSKVYIWSRPPGSGMRAGKLSREILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAGRFA 310
            S   SK A  RSVSMT KDKPD +DLADLIMSGTSY++AVKGTEFDALD ET++E+EES RRL AL+ENRLEEYLEE G+TDLLDK R + G+P++SE+   T   APP  KK  TVEMAQG+WAEIL+HTDRVTKTVKGGMEIQYRALV VGNL+GVGGFAIGKAD+PAVAITEASRKAKLL NLVYVERYKQASLCQDL+GKHNGSKVYIWSRPPGSGMRAGKLSR+ILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAGRFA
Sbjct:   85 SADESKPASVRSVSMTDKDKPDVVDLADLIMSGTSYEEAVKGTEFDALDKETSKEFEESTRRLTALRENRLEEYLEETGETDLLDKVRAIYGEPETSEQ---TDGPAPPKKKKKKTVEMAQGQWAEILVHTDRVTKTVKGGMEIQYRALVTVGNLHGVGGFAIGKADTPAVAITEASRKAKLLHNLVYVERYKQASLCQDLVGKHNGSKVYIWSRPPGSGMRAGKLSRDILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAGRFA 370

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BLAST of mRNA_C-linearis_contig7.14628.1 vs. uniprot
Match: D7FTY0_ECTSI (S5 DRBM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTY0_ECTSI)

HSP 1 Score: 444 bits (1143), Expect = 4.180e-155
Identity = 245/312 (78.53%), Postives = 267/312 (85.58%), Query Frame = 0

Query:    1 VLSEREGKHGDSHADGGDGKSGS--SVQGSKKAPSRSVSMTGKDKPDPIDLADLIMSGTSYKDAVKGTEFDALDAETAQEYEESIRRLKALQENRLEEYLEEKGDTDLLDKFRTVKGKPKSSEEVGSTSPVAPPPPKKTVEMAQGKWAEILIHTDRVTKTVKGGMEIQYRALVAVGNLNGVGGFAIGKADSPAVAITEASRKAKLLPNLVYVERYKQASLCQDLMGKHNGSKVYIWSRPPGSGMRAGKLSREILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAGRFA 310
            +L +R  K G+SH     GK G   S   SK A  RSVSMT KDKPD +DLADLIMSGTSY++AVKGTEFDALD ET++E+EES RRL AL+ENRLEEYLEE G+TDLLDK R + G+P++SE+   T   APP  KKTVEMAQG+WAEIL+HTDRVTKTVKGGMEIQYRALV VGNL+GVGGFAIGKAD+PAVAITEASRKAKLL NLVYVERYKQASLCQDL+GKHNGSKVYIWSR       AGKLSR+ILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAGRFA
Sbjct:    1 MLLDRGDKRGESHNVDNGGKEGDTGSADESKPASVRSVSMTDKDKPDVVDLADLIMSGTSYEEAVKGTEFDALDKETSKEFEESTRRLTALRENRLEEYLEETGETDLLDKVRAIYGEPETSEQ---TDGPAPPKKKKTVEMAQGQWAEILVHTDRVTKTVKGGMEIQYRALVTVGNLHGVGGFAIGKADTPAVAITEASRKAKLLHNLVYVERYKQASLCQDLVGKHNGSKVYIWSR-------AGKLSRDILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAGRFA 302

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BLAST of mRNA_C-linearis_contig7.14628.1 vs. uniprot
Match: A0A6H5LA05_9PHAE (S5 DRBM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LA05_9PHAE)

HSP 1 Score: 231 bits (589), Expect = 3.090e-73
Identity = 114/122 (93.44%), Postives = 120/122 (98.36%), Query Frame = 0

Query:  140 MAQGKWAEILIHTDRVTKTVKGGMEIQYRALVAVGNLNGVGGFAIGKADSPAVAITEASRKAKLLPNLVYVERYKQASLCQDLMGKHNGSKVYIWSRPPGSGMRAGKLSREILYNMGITDGA 261
            MAQG+WAEIL+HTDRVTKTVKGGMEIQYRALV VGNL+GVGGFAIGKAD+PAVAITEASRKAKLL NLVYVERYKQASLCQDL+GKHNGSKVYIWSRPPGSGMRAGKLSR+ILYNMGITDGA
Sbjct:    1 MAQGQWAEILVHTDRVTKTVKGGMEIQYRALVTVGNLHGVGGFAIGKADTPAVAITEASRKAKLLHNLVYVERYKQASLCQDLVGKHNGSKVYIWSRPPGSGMRAGKLSRDILYNMGITDGA 122

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BLAST of mRNA_C-linearis_contig7.14628.1 vs. uniprot
Match: F0Y2H1_AURAN (S5 DRBM domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2H1_AURAN)

HSP 1 Score: 151 bits (381), Expect = 4.020e-41
Identity = 84/179 (46.93%), Postives = 112/179 (62.57%), Query Frame = 0

Query:  124 GSTSPVAPPPPKKTVEMAQGKWAEILIHTDRVTKTVKGGMEIQYRALVAVGNLNGVGGFAIGKADSPAVAITEASRKAKLLPNLVYVERYKQASLCQDLMGKHNGSKVYIWSRPPGSGMRAGKLSREILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQ 302
            G  +P AP P K      +G+WAE ++  DRV K V+GG  ++YRALVAVGNL G GGFA GK  SP  A+  ASR+AK   +L +V+R++  +L  D+ GKHN   V I++ PPG GM  G L R I+  +G +    K  GRR+ YS + A FDALA    +E IAR RG+RIL ++
Sbjct:   25 GGPAPRAPEP-KPEPAGPEGRWAETIVKIDRVQKVVRGGTIMRYRALVAVGNLMGAGGFAFGKGHSPQDAVARASRRAKT--DLRFVDRHRDVALAHDVRGKHNNCTVDIYAVPPGKGMVGGALGRAIMTQLGFSSFTIKARGRRSPYSYVAATFDALANLASVEDIARKRGRRILEIE 200

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BLAST of mRNA_C-linearis_contig7.14628.1 vs. uniprot
Match: A0A1Z5K7E2_FISSO (Small subunit ribosomal protein S5 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K7E2_FISSO)

HSP 1 Score: 138 bits (347), Expect = 3.670e-34
Identity = 79/167 (47.31%), Postives = 100/167 (59.88%), Query Frame = 0

Query:  139 EMAQGKWAEILIHTDRVTKTVKGGMEIQYRALVAVGNLNGVGGFAIGKADSPAVAITEASRKAKLLPNLVYVERYKQASLCQDLMGKHNGSKVYIWSRPPGSGMRAGKLSREILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREM 305
            ++A G+W+E+L+  DR TK  +GG    YRALV  GNLNG GGF IGK+  P  A+  ASRK K   N+ +V+RY+   L  DL GK N  KVY+  R    G+R   L REIL   GIT+   K  G RN Y++  A F AL  H  IE IA  RGKR++S+ R M
Sbjct:  234 QLAHGEWSEMLVTVDRTTKLWRGGRLESYRALVIGGNLNGCGGFGIGKSKDPINAVAVASRKCKR--NIFFVDRYQGNGLTSDLAGKQNSCKVYL--RSTDDGLRGNHLIREILKRFGITNCVAKSHGNRNPYNVTRATFKALMTHESIEDIALKRGKRLVSIDRAM 396

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BLAST of mRNA_C-linearis_contig7.14628.1 vs. uniprot
Match: D7FIU8_ECTSI (Ribosomal_S5_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU8_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 1.150e-22
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0

Query:  262 CKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAGRFA 310
            CKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAGRFA
Sbjct:    3 CKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAGRFA 51

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BLAST of mRNA_C-linearis_contig7.14628.1 vs. uniprot
Match: A0A7G8ZJN6_9PROT (30S ribosomal protein S5 n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A7G8ZJN6_9PROT)

HSP 1 Score: 101 bits (251), Expect = 3.710e-22
Identity = 62/160 (38.75%), Postives = 87/160 (54.37%), Query Frame = 0

Query:  142 QGKWAEILIHTDRVTKTVKGGMEIQYRALVAVGNLNGVGGFAIGKADSPAVAITEASRKAKLLPNLVYVERYKQASLCQDLMGKHNGSKVYIWSRPPGSGMRAGKLSREILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSL 301
            Q +  + L+H +RV KTVKGG   Q+ ALV VG+  G  GF  GKA     AI +A+ +AK    +V +   +  +L  D  G+H   KV + + PPG+G+ AG   R +L  +G+ D   K  G  N Y+MI A FDAL   +   SIA  RG ++  L
Sbjct:   21 QDEIVDKLVHINRVAKTVKGGRNFQFAALVVVGDQKGRVGFGQGKAREVPEAIRKATEEAK--KTMVRIPLREGRTLHHDSPGRHGAGKVILRAAPPGTGVIAGGPMRAVLETLGVQDVVAKSTGTSNPYNMIRATFDALKHQKSPRSIAAKRGMKVADL 178

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BLAST of mRNA_C-linearis_contig7.14628.1 vs. uniprot
Match: A0A420WMI4_9PROT (30S ribosomal protein S5 n=4 Tax=Robiginitomaculaceae TaxID=2800062 RepID=A0A420WMI4_9PROT)

HSP 1 Score: 99.8 bits (247), Expect = 1.240e-21
Identity = 59/163 (36.20%), Postives = 90/163 (55.21%), Query Frame = 0

Query:  139 EMAQGKWAEILIHTDRVTKTVKGGMEIQYRALVAVGNLNGVGGFAIGKADSPAVAITEASRKAKLLPNLVYVERYKQASLCQDLMGKHNGSKVYIWSRPPGSGMRAGKLSREILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSL 301
            E    ++ + L+H +RV KTVKGG  + + ALV VG+  G  GF  GKA     AI +A+ +AK    ++ V   +  +L  D+ G+H   K+ + S PPG+G+ AG   R +L  +G+ D   K +G  N Y+M+ A FDAL +      IA  RGK++  +
Sbjct:   13 EEQDNEFIDRLVHINRVAKTVKGGRNMSFAALVIVGDEKGRVGFGKGKAREVPEAIRKATEEAK--KTMIRVPLREGRTLHHDVRGRHGAGKIVMRSAPPGTGVIAGGPMRAVLECLGVQDVVGKSVGTSNPYNMVRATFDALKRMESPRMIANKRGKKVAEI 173

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BLAST of mRNA_C-linearis_contig7.14628.1 vs. uniprot
Match: A0A848V710_9PROT (30S ribosomal protein S5 n=1 Tax=Hellea sp. TaxID=2715692 RepID=A0A848V710_9PROT)

HSP 1 Score: 99.0 bits (245), Expect = 2.420e-21
Identity = 58/155 (37.42%), Postives = 89/155 (57.42%), Query Frame = 0

Query:  144 KWAEILIHTDRVTKTVKGGMEIQYRALVAVGNLNGVGGFAIGKADSPAVAITEASRKAKLLPNLVYVERYKQASLCQDLMGKHNGSKVYIWSRPPGSGMRAGKLSREILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRI 298
            ++ + L+H +RV KTVKGG  + + ALV VG+  G  GF  GKA     AI +A+ +AK    ++ V   +  +L  DL G+H   K+ + + PPG+G+ AG   R +L  +G+ D   K +G  N Y+M+ A FDAL +     +IA  RGK++
Sbjct:   16 EFIDRLVHINRVAKTVKGGRNMSFAALVVVGDEKGRVGFGKGKAREVPEAIRKATEEAKR--TMIRVPLREGRTLHHDLKGRHGAGKIVMRAAPPGTGVIAGGPMRAVLECLGVQDVVGKSVGTSNPYNMVRATFDALKRAESPRTIAAKRGKKV 168

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BLAST of mRNA_C-linearis_contig7.14628.1 vs. uniprot
Match: A0A3C2E554_9PROT (30S ribosomal protein S5 n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A3C2E554_9PROT)

HSP 1 Score: 98.6 bits (244), Expect = 4.090e-21
Identity = 62/160 (38.75%), Postives = 86/160 (53.75%), Query Frame = 0

Query:  139 EMAQGKWAEILIHTDRVTKTVKGGMEIQYRALVAVGNLNGVGGFAIGKADSPAVAITEASRKAKLLPNLVYVERYKQASLCQDLMGKHNGSKVYIWSRPPGSGMRAGKLSREILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRI 298
            E    ++ + L+H +RV KTVKGG   Q+ ALV VG+  G  GF  GKA     AI +A+ +AK   +L+ V   +  +L QD  G H   KV + + PPG+G+ AG   R +L  +G+ D   K  G  N Y+MI A FDAL        IA  RG ++
Sbjct:   20 EEQSDEFVDKLVHINRVAKTVKGGRNFQFAALVIVGDQKGRVGFGQGKAREVPEAIRKATDEAK--KSLIRVPLREGRTLHQDSRGHHGAGKVVLRAAPPGTGVIAGGPMRAVLETLGVQDVVAKSTGTSNPYNMIRATFDALKHQHSPRHIAAKRGLKV 177

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig7.14628.1 vs. uniprot

BLAST of mRNA_C-linearis_contig7.14628.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FTY3_ECTSI	2.570e-158	84.08	S5 DRBM domain-containing protein n=1 Tax=Ectocarp...	[more]
D7FTY0_ECTSI	4.180e-155	78.53	S5 DRBM domain-containing protein n=2 Tax=Ectocarp...	[more]
A0A6H5LA05_9PHAE	3.090e-73	93.44	S5 DRBM domain-containing protein n=1 Tax=Ectocarp...	[more]
F0Y2H1_AURAN	4.020e-41	46.93	S5 DRBM domain-containing protein n=1 Tax=Aureococ...	[more]
A0A1Z5K7E2_FISSO	3.670e-34	47.31	Small subunit ribosomal protein S5 n=2 Tax=Fistuli...	[more]
D7FIU8_ECTSI	1.150e-22	100.00	Ribosomal_S5_C domain-containing protein n=1 Tax=E...	[more]
A0A7G8ZJN6_9PROT	3.710e-22	38.75	30S ribosomal protein S5 n=3 Tax=Alphaproteobacter...	[more]
A0A420WMI4_9PROT	1.240e-21	36.20	30S ribosomal protein S5 n=4 Tax=Robiginitomaculac...	[more]
A0A848V710_9PROT	2.420e-21	37.42	30S ribosomal protein S5 n=1 Tax=Hellea sp. TaxID=...	[more]
A0A3C2E554_9PROT	4.090e-21	38.75	30S ribosomal protein S5 n=3 Tax=Alphaproteobacter...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 76..100
None	No IPR available	GENE3D	3.30.160.20		coord: 136..205 e-value: 6.5E-17 score: 63.3
None	No IPR available	PANTHER	PTHR13718:SF91	28S RIBOSOMAL PROTEIN S5, MITOCHONDRIAL	coord: 57..304
None	No IPR available	SUPERFAMILY	54768	dsRNA-binding domain-like	coord: 143..212
IPR014721	Ribosomal protein S5 domain 2-type fold, subgroup	GENE3D	3.30.230.10		coord: 213..303 e-value: 4.9E-18 score: 66.5
IPR005324	Ribosomal protein S5, C-terminal	PFAM	PF03719	Ribosomal_S5_C	coord: 224..294 e-value: 1.8E-19 score: 68.9
IPR013810	Ribosomal protein S5, N-terminal	PFAM	PF00333	Ribosomal_S5	coord: 146..211 e-value: 1.7E-19 score: 69.5
IPR013810	Ribosomal protein S5, N-terminal	PROSITE	PS50881	S5_DSRBD	coord: 145..208 score: 14.531
IPR000851	Ribosomal protein S5	PANTHER	PTHR13718	RIBOSOMAL S SUBUNIT	coord: 57..304
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 217..296

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig7	contig	C-linearis_contig7:3861860..3865029 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig7.14628.1	mRNA_C-linearis_contig7.14628.1	Chordaria linearis ClinC8C monoicous	mRNA	C-linearis_contig7 3861860..3865029 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_C-linearis_contig7.14628.1 ID=prot_C-linearis_contig7.14628.1|Name=mRNA_C-linearis_contig7.14628.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=311bp
VLSEREGKHGDSHADGGDGKSGSSVQGSKKAPSRSVSMTGKDKPDPIDLA
DLIMSGTSYKDAVKGTEFDALDAETAQEYEESIRRLKALQENRLEEYLEE
KGDTDLLDKFRTVKGKPKSSEEVGSTSPVAPPPPKKTVEMAQGKWAEILI
HTDRVTKTVKGGMEIQYRALVAVGNLNGVGGFAIGKADSPAVAITEASRK
AKLLPNLVYVERYKQASLCQDLMGKHNGSKVYIWSRPPGSGMRAGKLSRE
ILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILS
LQREMAGRFA*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR014721	Ribosomal_S5_D2-typ_fold_subgr
IPR005324	Ribosomal_S5_C
IPR013810	Ribosomal_S5_N
IPR000851	Ribosomal_S5
IPR020568	Ribosomal_S5_D2-typ_fold