mRNA_C-linearis_contig7.14628.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig7.14628.1
Unique NamemRNA_C-linearis_contig7.14628.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig7.14628.1 vs. uniprot
Match: D7FTY3_ECTSI (S5 DRBM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTY3_ECTSI)

HSP 1 Score: 455 bits (1171), Expect = 2.570e-158
Identity = 243/289 (84.08%), Postives = 262/289 (90.66%), Query Frame = 1 
Query:   70 SVQGSKKAPSRSVSMTGKDKPDPIDLADLIMSGTSYKDAVKGTEFDALDAETAQEYEESIRRLKALQENRLEEYLEEKGDTDLLDKFRTVKGKPKSSEEVGSTSPVAPPPPKK--TVEMAQGKWAEILIHTDRVTKTVKGGMEIQYRALVAVGNLNGVGGFAIGKADSPAVAITEASRKAKLLPNLVYVERYKQASLCQDLMGKHNGSKVYIWSRPPGSGMRAGKLSREILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAGRFA 930
            S   SK A  RSVSMT KDKPD +DLADLIMSGTSY++AVKGTEFDALD ET++E+EES RRL AL+ENRLEEYLEE G+TDLLDK R + G+P++SE+   T   APP  KK  TVEMAQG+WAEIL+HTDRVTKTVKGGMEIQYRALV VGNL+GVGGFAIGKAD+PAVAITEASRKAKLL NLVYVERYKQASLCQDL+GKHNGSKVYIWSRPPGSGMRAGKLSR+ILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAGRFA
Sbjct:   85 SADESKPASVRSVSMTDKDKPDVVDLADLIMSGTSYEEAVKGTEFDALDKETSKEFEESTRRLTALRENRLEEYLEETGETDLLDKVRAIYGEPETSEQ---TDGPAPPKKKKKKTVEMAQGQWAEILVHTDRVTKTVKGGMEIQYRALVTVGNLHGVGGFAIGKADTPAVAITEASRKAKLLHNLVYVERYKQASLCQDLVGKHNGSKVYIWSRPPGSGMRAGKLSRDILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAGRFA 370
[Close]
BLAST of mRNA_C-linearis_contig7.14628.1 vs. uniprot
Match: D7FTY0_ECTSI (S5 DRBM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTY0_ECTSI)

HSP 1 Score: 444 bits (1143), Expect = 4.180e-155
Identity = 245/312 (78.53%), Postives = 267/312 (85.58%), Query Frame = 1 
Query:    1 VLSEREGKHGDSHADGGDGKSGS--SVQGSKKAPSRSVSMTGKDKPDPIDLADLIMSGTSYKDAVKGTEFDALDAETAQEYEESIRRLKALQENRLEEYLEEKGDTDLLDKFRTVKGKPKSSEEVGSTSPVAPPPPKKTVEMAQGKWAEILIHTDRVTKTVKGGMEIQYRALVAVGNLNGVGGFAIGKADSPAVAITEASRKAKLLPNLVYVERYKQASLCQDLMGKHNGSKVYIWSRPPGSGMRAGKLSREILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAGRFA 930
            +L +R  K G+SH     GK G   S   SK A  RSVSMT KDKPD +DLADLIMSGTSY++AVKGTEFDALD ET++E+EES RRL AL+ENRLEEYLEE G+TDLLDK R + G+P++SE+   T   APP  KKTVEMAQG+WAEIL+HTDRVTKTVKGGMEIQYRALV VGNL+GVGGFAIGKAD+PAVAITEASRKAKLL NLVYVERYKQASLCQDL+GKHNGSKVYIWSR       AGKLSR+ILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAGRFA
Sbjct:    1 MLLDRGDKRGESHNVDNGGKEGDTGSADESKPASVRSVSMTDKDKPDVVDLADLIMSGTSYEEAVKGTEFDALDKETSKEFEESTRRLTALRENRLEEYLEETGETDLLDKVRAIYGEPETSEQ---TDGPAPPKKKKTVEMAQGQWAEILVHTDRVTKTVKGGMEIQYRALVTVGNLHGVGGFAIGKADTPAVAITEASRKAKLLHNLVYVERYKQASLCQDLVGKHNGSKVYIWSR-------AGKLSRDILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAGRFA 302
[Close]
BLAST of mRNA_C-linearis_contig7.14628.1 vs. uniprot
Match: A0A6H5LA05_9PHAE (S5 DRBM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LA05_9PHAE)

HSP 1 Score: 231 bits (589), Expect = 3.090e-73
Identity = 114/122 (93.44%), Postives = 120/122 (98.36%), Query Frame = 1 
Query:  418 MAQGKWAEILIHTDRVTKTVKGGMEIQYRALVAVGNLNGVGGFAIGKADSPAVAITEASRKAKLLPNLVYVERYKQASLCQDLMGKHNGSKVYIWSRPPGSGMRAGKLSREILYNMGITDGA 783
            MAQG+WAEIL+HTDRVTKTVKGGMEIQYRALV VGNL+GVGGFAIGKAD+PAVAITEASRKAKLL NLVYVERYKQASLCQDL+GKHNGSKVYIWSRPPGSGMRAGKLSR+ILYNMGITDGA
Sbjct:    1 MAQGQWAEILVHTDRVTKTVKGGMEIQYRALVTVGNLHGVGGFAIGKADTPAVAITEASRKAKLLHNLVYVERYKQASLCQDLVGKHNGSKVYIWSRPPGSGMRAGKLSRDILYNMGITDGA 122
[Close]
BLAST of mRNA_C-linearis_contig7.14628.1 vs. uniprot
Match: F0Y2H1_AURAN (S5 DRBM domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2H1_AURAN)

HSP 1 Score: 151 bits (381), Expect = 4.020e-41
Identity = 84/179 (46.93%), Postives = 112/179 (62.57%), Query Frame = 1 
Query:  370 GSTSPVAPPPPKKTVEMAQGKWAEILIHTDRVTKTVKGGMEIQYRALVAVGNLNGVGGFAIGKADSPAVAITEASRKAKLLPNLVYVERYKQASLCQDLMGKHNGSKVYIWSRPPGSGMRAGKLSREILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQ 906
            G  +P AP P K      +G+WAE ++  DRV K V+GG  ++YRALVAVGNL G GGFA GK  SP  A+  ASR+AK   +L +V+R++  +L  D+ GKHN   V I++ PPG GM  G L R I+  +G +    K  GRR+ YS + A FDALA    +E IAR RG+RIL ++
Sbjct:   25 GGPAPRAPEP-KPEPAGPEGRWAETIVKIDRVQKVVRGGTIMRYRALVAVGNLMGAGGFAFGKGHSPQDAVARASRRAKT--DLRFVDRHRDVALAHDVRGKHNNCTVDIYAVPPGKGMVGGALGRAIMTQLGFSSFTIKARGRRSPYSYVAATFDALANLASVEDIARKRGRRILEIE 200
[Close]
BLAST of mRNA_C-linearis_contig7.14628.1 vs. uniprot
Match: A0A1Z5K7E2_FISSO (Small subunit ribosomal protein S5 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K7E2_FISSO)

HSP 1 Score: 138 bits (347), Expect = 3.670e-34
Identity = 79/167 (47.31%), Postives = 100/167 (59.88%), Query Frame = 1 
Query:  415 EMAQGKWAEILIHTDRVTKTVKGGMEIQYRALVAVGNLNGVGGFAIGKADSPAVAITEASRKAKLLPNLVYVERYKQASLCQDLMGKHNGSKVYIWSRPPGSGMRAGKLSREILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREM 915
            ++A G+W+E+L+  DR TK  +GG    YRALV  GNLNG GGF IGK+  P  A+  ASRK K   N+ +V+RY+   L  DL GK N  KVY+  R    G+R   L REIL   GIT+   K  G RN Y++  A F AL  H  IE IA  RGKR++S+ R M
Sbjct:  234 QLAHGEWSEMLVTVDRTTKLWRGGRLESYRALVIGGNLNGCGGFGIGKSKDPINAVAVASRKCKR--NIFFVDRYQGNGLTSDLAGKQNSCKVYL--RSTDDGLRGNHLIREILKRFGITNCVAKSHGNRNPYNVTRATFKALMTHESIEDIALKRGKRLVSIDRAM 396
[Close]
BLAST of mRNA_C-linearis_contig7.14628.1 vs. uniprot
Match: D7FIU8_ECTSI (Ribosomal_S5_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU8_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 1.150e-22
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1 
Query:  784 CKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAGRFA 930
            CKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAGRFA
Sbjct:    3 CKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAGRFA 51
[Close]
BLAST of mRNA_C-linearis_contig7.14628.1 vs. uniprot
Match: A0A7G8ZJN6_9PROT (30S ribosomal protein S5 n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A7G8ZJN6_9PROT)

HSP 1 Score: 101 bits (251), Expect = 3.710e-22
Identity = 62/160 (38.75%), Postives = 87/160 (54.37%), Query Frame = 1 
Query:  424 QGKWAEILIHTDRVTKTVKGGMEIQYRALVAVGNLNGVGGFAIGKADSPAVAITEASRKAKLLPNLVYVERYKQASLCQDLMGKHNGSKVYIWSRPPGSGMRAGKLSREILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSL 903
            Q +  + L+H +RV KTVKGG   Q+ ALV VG+  G  GF  GKA     AI +A+ +AK    +V +   +  +L  D  G+H   KV + + PPG+G+ AG   R +L  +G+ D   K  G  N Y+MI A FDAL   +   SIA  RG ++  L
Sbjct:   21 QDEIVDKLVHINRVAKTVKGGRNFQFAALVVVGDQKGRVGFGQGKAREVPEAIRKATEEAK--KTMVRIPLREGRTLHHDSPGRHGAGKVILRAAPPGTGVIAGGPMRAVLETLGVQDVVAKSTGTSNPYNMIRATFDALKHQKSPRSIAAKRGMKVADL 178
[Close]
BLAST of mRNA_C-linearis_contig7.14628.1 vs. uniprot
Match: A0A420WMI4_9PROT (30S ribosomal protein S5 n=4 Tax=Robiginitomaculaceae TaxID=2800062 RepID=A0A420WMI4_9PROT)

HSP 1 Score: 99.8 bits (247), Expect = 1.240e-21
Identity = 59/163 (36.20%), Postives = 90/163 (55.21%), Query Frame = 1 
Query:  415 EMAQGKWAEILIHTDRVTKTVKGGMEIQYRALVAVGNLNGVGGFAIGKADSPAVAITEASRKAKLLPNLVYVERYKQASLCQDLMGKHNGSKVYIWSRPPGSGMRAGKLSREILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSL 903
            E    ++ + L+H +RV KTVKGG  + + ALV VG+  G  GF  GKA     AI +A+ +AK    ++ V   +  +L  D+ G+H   K+ + S PPG+G+ AG   R +L  +G+ D   K +G  N Y+M+ A FDAL +      IA  RGK++  +
Sbjct:   13 EEQDNEFIDRLVHINRVAKTVKGGRNMSFAALVIVGDEKGRVGFGKGKAREVPEAIRKATEEAK--KTMIRVPLREGRTLHHDVRGRHGAGKIVMRSAPPGTGVIAGGPMRAVLECLGVQDVVGKSVGTSNPYNMVRATFDALKRMESPRMIANKRGKKVAEI 173
[Close]
BLAST of mRNA_C-linearis_contig7.14628.1 vs. uniprot
Match: A0A848V710_9PROT (30S ribosomal protein S5 n=1 Tax=Hellea sp. TaxID=2715692 RepID=A0A848V710_9PROT)

HSP 1 Score: 99.0 bits (245), Expect = 2.420e-21
Identity = 58/155 (37.42%), Postives = 89/155 (57.42%), Query Frame = 1 
Query:  430 KWAEILIHTDRVTKTVKGGMEIQYRALVAVGNLNGVGGFAIGKADSPAVAITEASRKAKLLPNLVYVERYKQASLCQDLMGKHNGSKVYIWSRPPGSGMRAGKLSREILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRI 894
            ++ + L+H +RV KTVKGG  + + ALV VG+  G  GF  GKA     AI +A+ +AK    ++ V   +  +L  DL G+H   K+ + + PPG+G+ AG   R +L  +G+ D   K +G  N Y+M+ A FDAL +     +IA  RGK++
Sbjct:   16 EFIDRLVHINRVAKTVKGGRNMSFAALVVVGDEKGRVGFGKGKAREVPEAIRKATEEAKR--TMIRVPLREGRTLHHDLKGRHGAGKIVMRAAPPGTGVIAGGPMRAVLECLGVQDVVGKSVGTSNPYNMVRATFDALKRAESPRTIAAKRGKKV 168
[Close]
BLAST of mRNA_C-linearis_contig7.14628.1 vs. uniprot
Match: A0A3C2E554_9PROT (30S ribosomal protein S5 n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A3C2E554_9PROT)

HSP 1 Score: 98.6 bits (244), Expect = 4.090e-21
Identity = 62/160 (38.75%), Postives = 86/160 (53.75%), Query Frame = 1 
Query:  415 EMAQGKWAEILIHTDRVTKTVKGGMEIQYRALVAVGNLNGVGGFAIGKADSPAVAITEASRKAKLLPNLVYVERYKQASLCQDLMGKHNGSKVYIWSRPPGSGMRAGKLSREILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRI 894
            E    ++ + L+H +RV KTVKGG   Q+ ALV VG+  G  GF  GKA     AI +A+ +AK   +L+ V   +  +L QD  G H   KV + + PPG+G+ AG   R +L  +G+ D   K  G  N Y+MI A FDAL        IA  RG ++
Sbjct:   20 EEQSDEFVDKLVHINRVAKTVKGGRNFQFAALVIVGDQKGRVGFGQGKAREVPEAIRKATDEAK--KSLIRVPLREGRTLHQDSRGHHGAGKVVLRAAPPGTGVIAGGPMRAVLETLGVQDVVAKSTGTSNPYNMIRATFDALKHQHSPRHIAAKRGLKV 177
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig7.14628.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTY3_ECTSI2.570e-15884.08S5 DRBM domain-containing protein n=1 Tax=Ectocarp... [more]
D7FTY0_ECTSI4.180e-15578.53S5 DRBM domain-containing protein n=2 Tax=Ectocarp... [more]
A0A6H5LA05_9PHAE3.090e-7393.44S5 DRBM domain-containing protein n=1 Tax=Ectocarp... [more]
F0Y2H1_AURAN4.020e-4146.93S5 DRBM domain-containing protein n=1 Tax=Aureococ... [more]
A0A1Z5K7E2_FISSO3.670e-3447.31Small subunit ribosomal protein S5 n=2 Tax=Fistuli... [more]
D7FIU8_ECTSI1.150e-22100.00Ribosomal_S5_C domain-containing protein n=1 Tax=E... [more]
A0A7G8ZJN6_9PROT3.710e-2238.7530S ribosomal protein S5 n=3 Tax=Alphaproteobacter... [more]
A0A420WMI4_9PROT1.240e-2136.2030S ribosomal protein S5 n=4 Tax=Robiginitomaculac... [more]
A0A848V710_9PROT2.420e-2137.4230S ribosomal protein S5 n=1 Tax=Hellea sp. TaxID=... [more]
A0A3C2E554_9PROT4.090e-2138.7530S ribosomal protein S5 n=3 Tax=Alphaproteobacter... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig7contigC-linearis_contig7:3861860..3865029 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score462.6
Seed ortholog evalue1.4e-127
Seed eggNOG ortholog2880.D7FTY3
Preferred nameMRPS5
KEGG koko:K02988,ko:K14026
KEGG Pathwayko03010,ko04141,map03010,map04141
KEGG ModuleM00178,M00179,M00403
Hectar predicted targeting categoryother localisation
GOsGO:0000313,GO:0000314,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005763,GO:0005840,GO:0006412,GO:0006414,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0016043,GO:0019538,GO:0019866,GO:0022411,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032543,GO:0032984,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0070125,GO:0070126,GO:0071704,GO:0071840,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0098@1,KOG2646@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons8
Model size933
Cds size933
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig7.14628.1prot_C-linearis_contig7.14628.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig7 3861860..3865029 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930333.675644-CDS-C-linearis_contig7:3861859..38620091622930333.675644-CDS-C-linearis_contig7:3861859..3862009Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 3861860..3862009 -
1690881017.3894155-CDS-C-linearis_contig7:3861859..38620091690881017.3894155-CDS-C-linearis_contig7:3861859..3862009Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 3861860..3862009 -
1622930333.6940804-CDS-C-linearis_contig7:3862234..38623271622930333.6940804-CDS-C-linearis_contig7:3862234..3862327Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 3862235..3862327 -
1690881017.4037964-CDS-C-linearis_contig7:3862234..38623271690881017.4037964-CDS-C-linearis_contig7:3862234..3862327Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 3862235..3862327 -
1622930333.7159941-CDS-C-linearis_contig7:3862485..38625791622930333.7159941-CDS-C-linearis_contig7:3862485..3862579Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 3862486..3862579 -
1690881017.4163644-CDS-C-linearis_contig7:3862485..38625791690881017.4163644-CDS-C-linearis_contig7:3862485..3862579Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 3862486..3862579 -
1622930333.7321894-CDS-C-linearis_contig7:3862870..38629951622930333.7321894-CDS-C-linearis_contig7:3862870..3862995Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 3862871..3862995 -
1690881017.427433-CDS-C-linearis_contig7:3862870..38629951690881017.427433-CDS-C-linearis_contig7:3862870..3862995Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 3862871..3862995 -
1622930333.7509272-CDS-C-linearis_contig7:3863527..38636171622930333.7509272-CDS-C-linearis_contig7:3863527..3863617Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 3863528..3863617 -
1690881017.442653-CDS-C-linearis_contig7:3863527..38636171690881017.442653-CDS-C-linearis_contig7:3863527..3863617Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 3863528..3863617 -
1622930333.7733738-CDS-C-linearis_contig7:3863793..38638691622930333.7733738-CDS-C-linearis_contig7:3863793..3863869Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 3863794..3863869 -
1690881017.455686-CDS-C-linearis_contig7:3863793..38638691690881017.455686-CDS-C-linearis_contig7:3863793..3863869Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 3863794..3863869 -
1622930333.8187695-CDS-C-linearis_contig7:3864300..38644581622930333.8187695-CDS-C-linearis_contig7:3864300..3864458Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 3864301..3864458 -
1690881017.467818-CDS-C-linearis_contig7:3864300..38644581690881017.467818-CDS-C-linearis_contig7:3864300..3864458Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 3864301..3864458 -
1622930333.8351698-CDS-C-linearis_contig7:3864882..38650291622930333.8351698-CDS-C-linearis_contig7:3864882..3865029Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 3864883..3865029 -
1690881017.4766777-CDS-C-linearis_contig7:3864882..38650291690881017.4766777-CDS-C-linearis_contig7:3864882..3865029Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 3864883..3865029 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig7.14628.1

>prot_C-linearis_contig7.14628.1 ID=prot_C-linearis_contig7.14628.1|Name=mRNA_C-linearis_contig7.14628.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=311bp
VLSEREGKHGDSHADGGDGKSGSSVQGSKKAPSRSVSMTGKDKPDPIDLA
DLIMSGTSYKDAVKGTEFDALDAETAQEYEESIRRLKALQENRLEEYLEE
KGDTDLLDKFRTVKGKPKSSEEVGSTSPVAPPPPKKTVEMAQGKWAEILI
HTDRVTKTVKGGMEIQYRALVAVGNLNGVGGFAIGKADSPAVAITEASRK
AKLLPNLVYVERYKQASLCQDLMGKHNGSKVYIWSRPPGSGMRAGKLSRE
ILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILS
LQREMAGRFA*
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mRNA from alignment at C-linearis_contig7:3861860..3865029-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig7.14628.1 ID=mRNA_C-linearis_contig7.14628.1|Name=mRNA_C-linearis_contig7.14628.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3170bp|location=Sequence derived from alignment at C-linearis_contig7:3861860..3865029- (Chordaria linearis ClinC8C monoicous)
GTGCTTAGCGAGCGTGAAGGCAAGCACGGAGATTCCCATGCCGATGGGGG
CGACGGGAAAAGCGGTAGCTCAGTTCAAGGGTCAAAGAAGGCACCCTCGA
GGAGCGTATCGATGACGGGGAAGGACAAACCCGACCCTATAGATCTGGTG
AGTTGACTTGTTTCTCTCACCGTGACCATGTCACCACCGACGCATCAACT
GCAACGCAGCATAAAGGCAGACAGCAGCAGTAGACGGCATCAAGGAAGCA
CGCAAAAACACGCACAGACCTAGTCTACACACACACCTGGGTTGGTGAGA
ATAGTTAGGTAGGTCCGATGGATGATGGAGCTGTGGGGCGGCTTTGAGAG
TAAGGTTCGAAACGCTGCCCGACTGGTCCGTCTGTGTTGCAGATGGGGCC
CCCCCGTCAGGCACGCGCTCCCACTTGGCAGAGCCCGACGCAGCTACTCT
TCATCCCAGATTTCCATACTGCAGTACTTGTGTACACCAGTGGTGAGCAC
GCGGATCAGGTTAACAAGCAAGAATGGATGCATCGCTACTACTGCTGTTG
CCTTTTGGTAAATGGACACAGGCGGACTTGATCATGTCTGGCACGAGCTA
CAAAGACGCCGTGAAGGGGACGGAGTTCGACGCCTTGGACGCAGAGACGG
CCCAGGAGTACGAGGAGTCGATCCGACGCTTGAAGGCCCTGCAAGAGAAC
AGACTCGAGGAGTACCTGGAGGAGAAAGGGTAAGTCGATGCGCAATTGCA
CACCCTGGCTGTCGCTCTCGTGAAAACGGCAGAGTATCATGGGTGACACG
GGGTACACTCAGAATCCTCCCTCGGGCTTGATTGGCCATCACGTCGATTG
CGGTGTTGCTGTGATTGTTTGCGGTGCCCAAGACGTTTCTTGGCTTGCCT
AGGTGGTGTAGTGGTAGATGTGTGCACATAACAGTAGTTGAAGCTATTCA
GCCCTCAGTGGTGCAGCAACTAAAGCACCTGCATAGCACAGACGTTCCTC
ATGTCGGCAACCACAGTAGTAGCGAGTGTGCGCCGGCAGTGGAAGGTTAA
GGTTTCAGTGTTGCAGTTTTGTTTTCTCTGCCACGACGCGCGTGTGTCGT
TGACAATCATACACGCAATGTTCTGCCTGCTTTGCTTCCCTCCCGGAAAA
CTCTTGCCAGGGACACGGATCTCCTGGACAAGTTCCGCACCGTCAAGGGC
AAGCCCAAGAGTTCCGAAGAGGTGGGAAGTACGAGCGTGCATGAATACAT
TAAATGCCTGGCCTTGGCCTCTTCACCTGCTGCTGTATTTGCCCATTTCT
CGTGTGGTAGGTATCTACTGTCTTTGACGGGGGCAACGTCGGTGTCACCC
AAATTTGATGCTGGAATCCCTCTCGGCGTGTCTACGTCGCCCTTGCCGAC
GTGTTGCTGCAGCCCGTCGCGCCTCCCCCTCCCAAGAAGACGGTGGAGAT
GGCGCAGGGGAAATGGGCAGAGATTTTGATTCACACCGACCGAGTCACGA
AGGTACGCGTGCCTCAAAGCACGGGCAGCGGGCAGCTGTTGTGGAGTGCT
TGACGCCTCCTTGCACAAGTAAAGCGATTTGCCGCTCTCTCCTGGCTGTT
TATGGTCTGCTTGCAATAGGCGCATCGGTTTCCCCCTTATCTATGTGATT
CCTCTCAGGGTCGTGGCGTGTGTTTTGGTTTTTACTCTTGTTTGCCCCCG
ACGCTTCTGCCCCCGACGCTTCTGGGGGGAAGGGTTGTTGCGATGTCGTT
GGTGCCGCGTGCGCGAAACTCGTGGCTGAAATATGCCGCGGCTTTGGGCA
CGCCAACGCTATTCTGAAGTACCGACAGCAGCTCGAGAGTCGATGTTGTG
GGGTTAATTAACTGCTGTTTATAGCCGGTCTTTCGACCGCGGCACCATAA
TCCCTTCTGCCGACTATTTGCGTTTGGTGCCGCAAACGACTTGAAACTGC
GTAGACAGCAGTGACGGTAGTTTTGCGCTGCTACCACTTACCCCCCTTGC
TTGGACCGGTGCATGGTGTGTACACCTCGCGCAGACCGTCAAGGGCGGTA
TGGAGATTCAGTACAGGGCCCTGGTGGCTGTGGGCAACCTCAATGGCGTT
GGGGGATTCGCCATCGGAAAGGCAGACAGCCCTGCCGTGGCCATCACGGA
GGCCAGCCGGTACGATGGCACCTGTAGATGTTGTTTCGTGTTCGAGCGCA
AAGCGTCGCCGTTGACTGCCTCTACTATTGTCACCAACACCTTGATGCCA
GAGCACATATTTAAATATGAGCTAAATTAGAGAGACACTACTGCTCCACA
TGGCTTGAAAGACGAATCCTGATTATTTTGGACGATCCTTTGTAGAGCAT
GCGAGTTACATCGACGAGACACGCGTGCATTGTTTGACCCCGTCCTGTGT
TTTGTCTCTTTCGCTGACGGCATGTCGTGTTTCCATCGCCCTCTCTTCAG
AAAAGCGAAGTTGCTTCCCAACCTCGTGTACGTGGAGCGGTACAAGCAGG
CGTCCCTGTGCCAGGACCTTATGGGCAAGCACAACGGGAGCAAGGTGGCA
CTACATAAGTTGGAACGTAATATTACGTCGTTGCGACCCACGCTTGTCTG
GAAACATTCTATCCATCGTCGGTGAAGATGGCGGTTGAGTTAAGTACAGT
GGTGAACTGCACGCTGATGACACTGCTGTGCTTCGTCTTGGGGGTTTCGC
AGGTGTACATCTGGTCTAGGCCACCAGGGTCTGGCATGAGAGCGGGCAAG
CTTTCGCGGGAAATCTTGTACAATATGGGCATCACGGACGGCGCGGTGAG
TTAAGCAGCAACCTGCTGGTATGCTTGTATTCTTCAGTTCAGAATTTCGA
AGAGGTAGTAGGGACCGCTTGTTCAAGAGCTTGAAAGCCGATCTTTTTGG
TATCATGTCGCTACCTACAGCTTGACACGCAAATTTGTTCGTGATGGTGT
GCATCAAAAGTACGTGGCGTGCAAGACCTTCACGCTCCCTACCCGCCACA
CGCGCCGCCCCTCTGTGCAGTGCAAGATCATCGGGAGGCGCAACAAGTAT
TCCATGATCTACGCCATGTTCGACGCCCTCGCCAAGCACCGCGGGATCGA
GAGCATAGCGAGGGGGCGGGGAAAGCGCATTTTGTCTCTCCAGCGAGAGA
TGGCGGGGCGATTCGCCTAG
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Coding sequence (CDS) from alignment at C-linearis_contig7:3861860..3865029-

>mRNA_C-linearis_contig7.14628.1 ID=mRNA_C-linearis_contig7.14628.1|Name=mRNA_C-linearis_contig7.14628.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1866bp|location=Sequence derived from alignment at C-linearis_contig7:3861860..3865029- (Chordaria linearis ClinC8C monoicous)
GTGCTTAGCGAGCGTGAAGGCAAGCACGGAGATTCCCATGCCGATGGGGG
CGACGGGAAAAGCGGTAGCTCAGTTCAAGGGTCAAAGAAGGCACCCTCGA
GGAGCGTATCGATGACGGGGAAGGACAAACCCGACCCTATAGATCTGGTG
CTTAGCGAGCGTGAAGGCAAGCACGGAGATTCCCATGCCGATGGGGGCGA
CGGGAAAAGCGGTAGCTCAGTTCAAGGGTCAAAGAAGGCACCCTCGAGGA
GCGTATCGATGACGGGGAAGGACAAACCCGACCCTATAGATCTGGCGGAC
TTGATCATGTCTGGCACGAGCTACAAAGACGCCGTGAAGGGGACGGAGTT
CGACGCCTTGGACGCAGAGACGGCCCAGGAGTACGAGGAGTCGATCCGAC
GCTTGAAGGCCCTGCAAGAGAACAGACTCGAGGAGTACCTGGAGGAGAAA
GGGCGGACTTGATCATGTCTGGCACGAGCTACAAAGACGCCGTGAAGGGG
ACGGAGTTCGACGCCTTGGACGCAGAGACGGCCCAGGAGTACGAGGAGTC
GATCCGACGCTTGAAGGCCCTGCAAGAGAACAGACTCGAGGAGTACCTGG
AGGAGAAAGGGGACACGGATCTCCTGGACAAGTTCCGCACCGTCAAGGGC
AAGCCCAAGAGTTCCGAAGAGGTGGGAAGTACGAGCGGACACGGATCTCC
TGGACAAGTTCCGCACCGTCAAGGGCAAGCCCAAGAGTTCCGAAGAGGTG
GGAAGTACGAGCCCCGTCGCGCCTCCCCCTCCCAAGAAGACGGTGGAGAT
GGCGCAGGGGAAATGGGCAGAGATTTTGATTCACACCGACCGAGTCACGA
AGCCCGTCGCGCCTCCCCCTCCCAAGAAGACGGTGGAGATGGCGCAGGGG
AAATGGGCAGAGATTTTGATTCACACCGACCGAGTCACGAAGACCGTCAA
GGGCGGTATGGAGATTCAGTACAGGGCCCTGGTGGCTGTGGGCAACCTCA
ATGGCGTTGGGGGATTCGCCATCGGAAAGGCAGACAGCCCTGCCGTGGCC
ATCACGGAGGCCAGCCGACCGTCAAGGGCGGTATGGAGATTCAGTACAGG
GCCCTGGTGGCTGTGGGCAACCTCAATGGCGTTGGGGGATTCGCCATCGG
AAAGGCAGACAGCCCTGCCGTGGCCATCACGGAGGCCAGCCGAAAAGCGA
AGTTGCTTCCCAACCTCGTGTACGTGGAGCGGTACAAGCAGGCGTCCCTG
TGCCAGGACCTTATGGGCAAGCACAACGGGAGCAAGAAAAGCGAAGTTGC
TTCCCAACCTCGTGTACGTGGAGCGGTACAAGCAGGCGTCCCTGTGCCAG
GACCTTATGGGCAAGCACAACGGGAGCAAGGTGTACATCTGGTCTAGGCC
ACCAGGGTCTGGCATGAGAGCGGGCAAGCTTTCGCGGGAAATCTTGTACA
ATATGGGCATCACGGACGGCGCGGTGTACATCTGGTCTAGGCCACCAGGG
TCTGGCATGAGAGCGGGCAAGCTTTCGCGGGAAATCTTGTACAATATGGG
CATCACGGACGGCGCGTGCAAGATCATCGGGAGGCGCAACAAGTATTCCA
TGATCTACGCCATGTTCGACGCCCTCGCCAAGCACCGCGGGATCGAGAGC
ATAGCGAGGGGGCGGGGAAAGCGCATTTTGTCTCTCCAGCGAGAGATGGC
GGGGCGATTCGCCTAGTGCAAGATCATCGGGAGGCGCAACAAGTATTCCA
TGATCTACGCCATGTTCGACGCCCTCGCCAAGCACCGCGGGATCGAGAGC
ATAGCGAGGGGGCGGGGAAAGCGCATTTTGTCTCTCCAGCGAGAGATGGC
GGGGCGATTCGCCTAG
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