prot_C-linearis_contig7.14510.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig7.14510.1
Unique Nameprot_C-linearis_contig7.14510.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length519
Homology
BLAST of mRNA_C-linearis_contig7.14510.1 vs. uniprot
Match: A0A6H5KBW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBW0_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 3.230e-37
Identity = 139/345 (40.29%), Postives = 163/345 (47.25%), Query Frame = 0
Query:  209 WGRKKKVGELIVGMMERRLDGGYDIFAPEVDRASRLHSSVVGLSQADIVKRTYERPRGRSLPKWDGS---MTVRGPPPAXXXXXASTWGLLGGGLTEQHKQPWSCLVCTFFNEDPAFRSACEMCGNARPSTVSVLGAGEQHXXXXXXXXWDGDDLGERGEAPAAAAARLREGGSGISSAAPSXXXGARLASVAAT------------PGIEPAIP-----GGGEGYTXXXXXXXXXXXGEVDRTLGGRFPGGGASPTASAA-------AGVLTVPHGAAREGAGIDWERGEEWQGVGNATFGDDSPVVGSPRHEA--FRFPLGGMRQGG----DGAGDG--GRGI 518
            WG KKKVG +IVGM+ERR+DGGY IF+PE++R S +       +Q  +V RTYERPRGRSLPKWD S   ++ R P P      AS  GL+G G + Q   PW+C  CT+ NEDPAFR+ACE+C   RPS           XXXXXXXX                                 XXX                      P IE  IP     GGGE               EVD  LGG  PGGGA P  S+         G  T    AA  G+   WE G+EWQG G+ +FG +SPV  SPR  A  F F       GG    DGAGDG  GRG+
Sbjct:  806 WGEKKKVGGVIVGMLERRVDGGYQIFSPEIERDSPI------AAQRGVVARTYERPRGRSLPKWDRSDDAVSTR-PLPPPPPRPASKLGLVGSGFSHQ---PWNCPACTYLNEDPAFRAACEICNTPRPSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPPQIEACIPSGFSVGGGEAGGLPVGGIEVEDN-EVDGILGGISPGGGAFPVVSSTDQAESRHCGSATAASAAALGGS---WEAGDEWQGFGSGSFGQESPVKCSPRQPATAFEFSFRNSEAGGGGVDDGAGDGNDGRGV 1136          
BLAST of mRNA_C-linearis_contig7.14510.1 vs. uniprot
Match: D7G1S7_ECTSI (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1S7_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 5.230e-34
Identity = 132/341 (38.71%), Postives = 160/341 (46.92%), Query Frame = 0
Query:  222 MMERRLDGGYDIFAPEVDRASRLHSSVVGLSQADIVKRTYERPRGRSLPKWDGSMTVRGPPPAXXXXX-----ASTWGLLGGGLTEQHKQPWSCLVCTFFNEDPAFRSACEMCGNARPSTVS-VLGAGEQ-HXXXXXXXXWDGDDL-----------------GERGEAPAAAAARLREGGSGISSAAPSXXXGARLASVAATPGIEPAIP-----GGGEGYTXXXXXXXXXXXGEVDRTLGGRFPGGGASPTAS----AAAGVLTVPHGAAREGAGIDWERGEEWQGVGNATFGDDSPVVGSPRH--EAFRFPLGGMRQG-------GDGAGDG--GRGI 518
            M+ERR+DGGY IF+PE++R S +       +Q  +V RTYERPRGRSLPKWD +       PA XXXX     AS  GL+G G ++Q   PW+C  CT+ NEDPAFR+ACE+C   RPS  +  +G G            WD  ++                                            XXX      VA  P IE  IP     GGGE     XXXXX     EVD  LGG  PGGGA P  S    AA+G       A+    G  WE G+EWQG G+ +FG +SPV  S R   +AF F  G    G       GD  GDG  GRG+
Sbjct:    1 MLERRVDGGYQIFSPEIERDSPI------AAQRGVVARTYERPRGRSLPKWDRTDDAVSTRPAPXXXXXXXRPASKLGLIGSGFSQQ---PWNCPACTYLNEDPAFRAACEICNTPRPSAAADAVGTGTSGDGGEQRHDDWDDSEVLKSCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAPPPQIEACIPSGFSVGGGEAGGLPXXXXXVDDN-EVDGILGGVSPGGGAFPVVSGAYQAASGHCGSATAASAAALGGGWEAGDEWQGFGSGSFGQESPVNCSSRQPTKAFEFAFGNSEAGXXXXXXVGDSTGDGNDGRGV 331          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig7.14510.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KBW0_9PHAE3.230e-3740.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1S7_ECTSI5.230e-3438.71RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.20.28.140coord: 301..359
e-value: 3.2E-9
score: 38.4
IPR036443Zinc finger, RanBP2-type superfamilySUPERFAMILY90209Ran binding protein zinc finger-likecoord: 304..333

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig7contigC-linearis_contig7:2761254..2765125 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig7.14510.1mRNA_C-linearis_contig7.14510.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig7 2760125..2765208 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig7.14510.1 ID=prot_C-linearis_contig7.14510.1|Name=mRNA_C-linearis_contig7.14510.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=519bp
MAAAEEDDDEDFVTCYEDTVGGVQADVVVFFRSADAAAGTTAPASSTGQG
GGEEAGGGGVGGGQQEQGEGSVLTVVVRPLPSTAPASVDSGSSRGGIDYY
DRHDTGYDVEHALSLPWPEAEDLARRHDTTQALRAASSTAAVAAAAAAVG
IEGDELAGPGGSSSAAWRQGGGGGGRIFGDDLPPPLSPSSPLRPTSRSYD
DGAGGFPSWGRKKKVGELIVGMMERRLDGGYDIFAPEVDRASRLHSSVVG
LSQADIVKRTYERPRGRSLPKWDGSMTVRGPPPAPPAAAASTWGLLGGGL
TEQHKQPWSCLVCTFFNEDPAFRSACEMCGNARPSTVSVLGAGEQHQHQH
QHQEWDGDDLGERGEAPAAAAARLREGGSGISSAAPSGGGGARLASVAAT
PGIEPAIPGGGEGYTTGGGGGGSDDDGEVDRTLGGRFPGGGASPTASAAA
GVLTVPHGAAREGAGIDWERGEEWQGVGNATFGDDSPVVGSPRHEAFRFP
LGGMRQGGDGAGDGGRGI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036443Znf_RanBP2_sf