prot_C-linearis_contig7.14464.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig7.14464.1
Unique Nameprot_C-linearis_contig7.14464.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length1153
Homology
BLAST of mRNA_C-linearis_contig7.14464.1 vs. uniprot
Match: A0A6H5JEX0_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX0_9PHAE)

HSP 1 Score: 444 bits (1141), Expect = 6.190e-133
Identity = 504/1105 (45.61%), Postives = 568/1105 (51.40%), Query Frame = 0
Query:  157 GDCPVCGKRYDRLVSHLRRNKLAGSCGASEVGLAYLRSLGGRVKGKGGSPSLG------LGGXXXXXXXXXXXXXXXXXXXXXXXXXXSVVSAVERTGAKNLWPCPVCAKMFHRVGTHIHRSDCKIVQGWRPDATMECQCCGKTIGVTVELLRQHSKVCSAAAGNGNTNPAXXXXXXXXXXXXXXXXXXXXXXXXXGAVPSPHMLVRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------------------------------------------------------------------------GSFSGGRALGSDGSESDPLGSTDWAG-GGXXXXXXXXXXXXXXFFGAMRRPLPPKKRWETAFEAWAGSG------------GGAAAASGVGEDDPDGVEARYPSLMKRAEESDLVTIREVRRAXXXXXXXXXXXXEAVV---------VCRVWANGGVEKRHRGDPGGVAAALGLAVADESDRLPRGGGSTARGFPLVAAVAARSVAEAAGIVAGARILKVEEAAMKGRSAADASKAVLDALLKRKKTRPKAGDEASVVARIVIVTPPWPSXXXXXXXXXXXXXXXXXXXXXXXXXAGGMACLSRKGGKGRDFVELCWSVLMVHGGGVPPPTGGSLAASEVVPGERPAAQDEEIARRLGFDVERRELSQGMGCIEVASVSPGGVAAKHGLRPKDLVLAVDGKHLLSTTASSFWLDVGNTLRACDFASREDKNPAAAPAV-------DAAVTTTGNSNHNHLDSFPGDHNECFWLRFLVFRKDAAVLPNGAASAAXXXXXXXXXXXXXXXXXXXXXXPPGSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGGGKQPPSPQHPQRQASQQRLERDEKRKRLEARRRPAWWQPPEKGSHRTVLALRPADALPGATLGGPVAAGAFLLEGVVLGDKLTIPAGSKLLSVDGKPTGHLDFKAARDVALSAGPKSVLVFD 1151
            G CP CG  ++RL +HL RN + GS  A    L    +L  R     G P++       +GG                                 R  +++LWPCPVC K F R+ TH+  SDCKIV  W   ATMEC+ CG+ + V  ++L+QHSK C     + +    XXXXXXXXXXXXXXXXXXXXXXXXX            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                                           GSF  GRALGSD S+SDP G     G  G                GAMRRPLPPKKRWETAFEAWAG G               AAA    E     VE RYP L  RAEES LVT+REVRRA           X             VCR+   GG+E                 V D  DR P G  +   GFP+ AAV A  VA++AG+ AGA ILKVEE++M+GRSAA+ +KA+  ALLKR  T   A   A+V  R+VIVTPPW +                          GGMACL R+G +GR+FVELCWSV M  GGGV PPT     AS    GERPA QD E+ARRLGFDVERRELSQ M CIEV+S++P GVAA+HGL+PKDL+LAVDG HLLSTT +SFWL+VG TLRACD A +  K  + A                 G      L +  G  ++  WLRFLVFRK A           XXXXXXXXX             P GSM                             W+          XXXXXXXXXXXXXXXXXXXXX                                             GK     Q       + RLERDEKRKRL  RRRPAWWQP ++GSHR VL LRPADALPGAT G PV  GAFLLE  VLGDKLTIPAG+KLLSVDG PTGHLDFK AR+VAL+AG KSVL F+
Sbjct:  145 GVCPTCGTMFERLSAHLARNNVCGSTPAGRAQLDAFAALRKRSTAA-GRPAVARGDFPPVGGIAAAVVGSRRPKAGGVRDSGAKEGPAGSEGKGSRRTSESLWPCPVCTKSFRRISTHVQMSDCKIVLQWEAGATMECRNCGEVVDVVPDVLQQHSKRCRPRDKSTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSNLLDHRRQPLPLVDANSGGGSFIAGRALGSDDSDSDPEGPDGGLGRAGSWCGAGGLPAGGGGIIGAMRRPLPPKKRWETAFEAWAGGGEKNKGCVALPQPAAVAAAEAAKE-----VEDRYPCLAGRAEESALVTVREVRRAEALLEGGAGTAXXXXXXXXXXXXXXVCRLVVEGGIE-----------------VTD--DRAP-GVANAWAGFPVAAAVVAGGVADSAGVGAGASILKVEESSMRGRSAAEVTKAMFAALLKR--TGKHAKSAATV--RLVIVTPPWLASAPPPGGGVDNKAGASAPASSYDG-VGGMACLGREGHEGREFVELCWSVFMASGGGVLPPTDRDSPASRA--GERPAEQDAEVARRLGFDVERRELSQWMECIEVSSITPDGVAARHGLQPKDLLLAVDGNHLLSTTEASFWLEVGRTLRACDTAFQTKKGGSKASTTAXXXXXXXXXXXXXGQDAFERLSA--GHDDDSDWLRFLVFRKCAXXXXXXXXXXXXXXXXXXXXLAIAGRAKRPVGRPMGSMESKKGVLAGGAGRGVTGQKEEVSRGLLP-WQLSRELPEAAAXXXXXXXXXXXXXXXXXXXXXSAKR-----------------------------------------GKLDDHAQXXXXXXEKARLERDEKRKRLAIRRRPAWWQPQQRGSHRAVLVLRPADALPGATPGAPVPTGAFLLEDTVLGDKLTIPAGAKLLSVDGTPTGHLDFKTAREVALTAGAKSVLAFE 1172          
BLAST of mRNA_C-linearis_contig7.14464.1 vs. uniprot
Match: D7G0M9_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0M9_ECTSI)

HSP 1 Score: 398 bits (1022), Expect = 4.940e-118
Identity = 470/1076 (43.68%), Postives = 544/1076 (50.56%), Query Frame = 0
Query:  166 YDRLVSHLRRNKLAGSCGASEVGLAYLRSLGGRVKGKGGSPSLG------LGGXXXXXXXXXXXXXXXXXXXXXXXXXXSVVSAVERTGAKNLWPCPVCAKMFHRVGTHIHRSDCKIVQGWRPDATMECQCCGKTIGVTVELLRQHSKVCSAAAGNGNTNPAXXXXXXXXXXXXXXXXXXXXXXXXXGAVPSPHMLVRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG-----------------------------------------------------------SFSGGRALGSDGSESDPLGSTDWAG-GGXXXXXXXXXXXXXXFFGAMRRPLPPKKRWETAFEAWAGSGGGAAA--------------ASGVGEDDPDGVEARYPSLMKRAEESDLVTIREVRRAXXXXXXXXXXXX---------EAVVVCRVWANGGVEKRHRGDPGGVAAALGLAVADESDRLPRGGGSTARGFPLVAAVAARSVAEAAGIVAGARILKVEEAAMKGRSAADASKAVLDALLKRKKTRPKAGDEASVVARIVIVTPPWPSXXXXXXXXXXXXXXXXXXXXXXXXXAGGMACLSRKGGKGRDFVELCWSVLMVHGGGVPPPTGGSLAASEVVPGERPAAQDEEIARRLGFDVERRELSQGMGCIEVASVSPGGVAAKHGLRPKDLVLAVDGKHLLSTTASSFWLDVGNTLRACDFASREDKNPAAAPAVDAAVTTTGNSNHNHLDSFPGDH-NECFWLRFLVFRKDAAVLPNGAASAAXXXXXXXXXXXXXXXXXXXXXXPPGSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGGGKQPPSPQHPQRQASQQRLERDEKRKRLEARRRPAWWQPPEKGSHRTVLALRPADALPGATLGGPVAAGAFLLEGVVLGDKLTIPAGSKLLSVDGKPTGHLDFKAARDVALSAGPKSVLVFD 1151
            ++RL +HL RNK+ GS  A    L    +L  R     G P++       +GG                                 R  +++LWPCPVC K F R+ TH+  SDCKIV  W   ATMEC+ CG+ + V  ++L+QHSK C       N    XXXXXXXXXXXXXXXXXXXXXXXXX            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                            SF  GRALGSD S+SDP G+    G  G    XXXXXXXXXX  G MRRPLPPKKRWETAFEAWAG                     A+ V E     VE RYP L  RAEES LVT+REVRRA                     +AVVVCR+ A GG+E++ +G+ G VAA LG  V D  DR P G  +   GFP+ AAV A  VA++AG+  GA ILKVE+++M+GRSA+D +KA+  ALLKR     K G  A+ V R+VIVTPPW +                          GGMACL R+  +GR+FVELCWSVLM  GGGV PPT   L AS    GERPA QD E+ARRLGFDVERRELSQ M CIEV+SV+P GVAA+HGL+PKDL+LAVDG HLLSTT +SFWL+VG TLRACD AS+ +K+   A       TT  + N +  +    DH ++  WLRFLVFRK A           XXX                   P GSM                                                                                                         GG  +  + Q  + +AS+  L R   R+ L     PA      +G+ R VL        PG   G PV  GAFLLE  VLGDKLTIPAG+KLLSVDG PTGHLDF  ARDVALSAG KSVL F+
Sbjct:    2 FERLSAHLTRNKVCGSTPAGRAQLEAFAALRKRSTAA-GRPAVARGDFPPVGGIAAAVVGSRRPKAGGVRDSGAKEGPAGSEGKGSRRRSESLWPCPVCTKSFRRISTHVQMSDCKIVLQWGAGATMECRNCGEVVDVVPDVLQQHSKRCRPRDKITNDEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFIAGRALGSDDSDSDPGGTDGGLGRAGSWSGXXXXXXXXXXXXGVMRRPLPPKKRWETAFEAWAGXXXXXXXXXXXXXXXXXXXXEAAEVCE-----VEDRYPCLASRAEESALVTVREVRRAEALPEGAAGTAPGEQQQQHRRQAVVVCRLVAEGGIERK-KGEAG-VAATLGFQVTD--DRAP-GVTNAWAGFPVAAAVVAEGVADSAGVGTGASILKVEDSSMRGRSASDVTKAMYAALLKR---TGKHGKSAATV-RLVIVTPPWSASAPTPGGGGVDNKAGAFAPASPYDGVGGMACLGRERHEGREFVELCWSVLMAPGGGVLPPTDVGLPASRA--GERPAEQDAEVARRLGFDVERRELSQWMECIEVSSVTPDGVAARHGLQPKDLLLAVDGNHLLSTTEASFWLEVGRTLRACDSASQTNKSGGKA------ATTNDSDNEDAFERLSADHGDDSDWLRFLVFRKCAXXXXXXXXXXXXXXLASAGRAKRPVGR------PKGSMESKKGALA-------------------------------------------------------------------------------------------------GGAGRGATGQ--KEEASRGLLPRQRSRE-LPGAAAPAPAPAGAEGAARHVLTPTSPSLPPGTRTGAPVPTGAFLLEDTVLGDKLTIPAGAKLLSVDGIPTGHLDFNTARDVALSAGAKSVLAFE 948          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig7.14464.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JEX0_9PHAE6.190e-13345.61PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G0M9_ECTSI4.940e-11843.68PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001478PDZ domainSMARTSM00228pdz_newcoord: 579..655
e-value: 0.5
score: 15.5
coord: 764..834
e-value: 0.16
score: 20.1
IPR001478PDZ domainPROSITEPS50106PDZcoord: 749..812
score: 9.491
NoneNo IPR availableGENE3D2.30.42.10coord: 757..834
e-value: 1.0E-7
score: 33.8
IPR036034PDZ superfamilySUPERFAMILY50156PDZ domain-likecoord: 765..818
IPR036034PDZ superfamilySUPERFAMILY50156PDZ domain-likecoord: 576..648

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig7contigC-linearis_contig7:2261194..2269777 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig7.14464.1mRNA_C-linearis_contig7.14464.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig7 2260316..2272129 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig7.14464.1 ID=prot_C-linearis_contig7.14464.1|Name=mRNA_C-linearis_contig7.14464.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1153bp
MRGNAGGATRVCPDCRQDVSAAVGHECPVLATQARLQRQVAAGRNGGGGA
RDEEGSDSSMEVLAPSSASQQQQSPAAAPPSQQPFSGGRGGRSSPSSSSP
PPSRRSPSPDASSTASSFFSLGGETGGGGGGSYSSSGHRGGGGGSAAKRD
ALGHLVGDCPVCGKRYDRLVSHLRRNKLAGSCGASEVGLAYLRSLGGRVK
GKGGSPSLGLGGGGGRVAAAAAAGGRGGGGGGGGRGGGSVVSAVERTGAK
NLWPCPVCAKMFHRVGTHIHRSDCKIVQGWRPDATMECQCCGKTIGVTVE
LLRQHSKVCSAAAGNGNTNPAAVPPSDSSSSSLSAASAAGQRPGPGGAVP
SPHMLVRSASSTSSTAAGGTSNGVGRRRGSPASSGGGGGGVGGSGVIRRR
GSPTPPGAAAASSAPHPDHRRSSLVDAGGGGSFSGGRALGSDGSESDPLG
STDWAGGGWVGGGGIGGALVGGFFGAMRRPLPPKKRWETAFEAWAGSGGG
AAAASGVGEDDPDGVEARYPSLMKRAEESDLVTIREVRRAAAAGPGGGGD
RREAVVVCRVWANGGVEKRHRGDPGGVAAALGLAVADESDRLPRGGGSTA
RGFPLVAAVAARSVAEAAGIVAGARILKVEEAAMKGRSAADASKAVLDAL
LKRKKTRPKAGDEASVVARIVIVTPPWPSPEPAPASSSAGVAAGLPSPPP
SGGGAGGMACLSRKGGKGRDFVELCWSVLMVHGGGVPPPTGGSLAASEVV
PGERPAAQDEEIARRLGFDVERRELSQGMGCIEVASVSPGGVAAKHGLRP
KDLVLAVDGKHLLSTTASSFWLDVGNTLRACDFASREDKNPAAAPAVDAA
VTTTGNSNHNHLDSFPGDHNECFWLRFLVFRKDAAVLPNGAASAASASSF
PFGGGVGLGGGKRGTGRPPGSMDKNGKGAGAAAPAAVGGGGHGPDQSKEI
DWRMPKQHQGQLQNRERSGAGAMAAAVAVAAAGAGVSQAAAAAAAAAALP
GEQEQTKNGAGKGKGKGKGKSKSKSRDGGGKQPPSPQHPQRQASQQRLER
DEKRKRLEARRRPAWWQPPEKGSHRTVLALRPADALPGATLGGPVAAGAF
LLEGVVLGDKLTIPAGSKLLSVDGKPTGHLDFKAARDVALSAGPKSVLVF
DD*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001478PDZ
IPR036034PDZ_sf