mRNA_C-linearis_contig7.14464.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig7.14464.1 vs. uniprot
Match: A0A6H5JEX0_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX0_9PHAE) HSP 1 Score: 444 bits (1143), Expect = 3.950e-130 Identity = 504/1105 (45.61%), Postives = 568/1105 (51.40%), Query Frame = 3
Query: 798 GDCPVCGKRYDRLVSHLRRNKLAGSCGASEVGLAYLRSLGGRVKGKGGSPSLG------LGGXXXXXXXXXXXXXXXXXXXXXXXXXXSVVSAVERTGAKNLWPCPVCAKMFHRVGTHIHRSDCKIVQGWRPDATMECQCCGKTIGVTVELLRQHSKVCSAAAGNGNTNPAXXXXXXXXXXXXXXXXXXXXXXXXXGAVPSPHMLVRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------------------------------------------------------------------------GSFSGGRALGSDGSESDPLGSTDWAG-GGXXXXXXXXXXXXXXFFGAMRRPLPPKKRWETAFEAWAGSG------------GGAAAASGVGEDDPDGVEARYPSLMKRAEESDLVTIREVRRAXXXXXXXXXXXXEAVV---------VCRVWANGGVEKRHRGDPGGVAAALGLAVADESDRLPRGGGSTARGFPLVAAVAARSVAEAAGIVAGARILKVEEAAMKGRSAADASKAVLDALLKRKKTRPKAGDEASVVARIVIVTPPWPSXXXXXXXXXXXXXXXXXXXXXXXXXAGGMACLSRKGGKGRDFVELCWSVLMVHGGGVPPPTGGSLAASEVVPGERPAAQDEEIARRLGFDVERRELSQGMGCIEVASVSPGGVAAKHGLRPKDLVLAVDGKHLLSTTASSFWLDVGNTLRACDFASREDKNPAAAPAV-------DAAVTTTGNSNHNHLDSFPGDHNECFWLRFLVFRKDAAVLPNGAASAAXXXXXXXXXXXXXXXXXXXXXXPPGSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGGGKQPPSPQHPQRQASQQRLERDEKRKRLEARRRPAWWQPPEKGSHRTVLALRPADALPGATLGGPVAAGAFLLEGVVLGDKLTIPAGSKLLSVDGKPTGHLDFKAARDVALSAGPKSVLVFD 3782
G CP CG ++RL +HL RN + GS A L +L R G P++ +GG R +++LWPCPVC K F R+ TH+ SDCKIV W ATMEC+ CG+ + V ++L+QHSK C + + XXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GSF GRALGSD S+SDP G G G GAMRRPLPPKKRWETAFEAWAG G AAA E VE RYP L RAEES LVT+REVRRA X VCR+ GG+E V D DR P G + GFP+ AAV A VA++AG+ AGA ILKVEE++M+GRSAA+ +KA+ ALLKR T A A+V R+VIVTPPW + GGMACL R+G +GR+FVELCWSV M GGGV PPT AS GERPA QD E+ARRLGFDVERRELSQ M CIEV+S++P GVAA+HGL+PKDL+LAVDG HLLSTT +SFWL+VG TLRACD A + K + A G L + G ++ WLRFLVFRK A XXXXXXXXX P GSM W+ XXXXXXXXXXXXXXXXXXXXX GK Q + RLERDEKRKRL RRRPAWWQP ++GSHR VL LRPADALPGAT G PV GAFLLE VLGDKLTIPAG+KLLSVDG PTGHLDFK AR+VAL+AG KSVL F+
Sbjct: 145 GVCPTCGTMFERLSAHLARNNVCGSTPAGRAQLDAFAALRKRSTAA-GRPAVARGDFPPVGGIAAAVVGSRRPKAGGVRDSGAKEGPAGSEGKGSRRTSESLWPCPVCTKSFRRISTHVQMSDCKIVLQWEAGATMECRNCGEVVDVVPDVLQQHSKRCRPRDKSTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSNLLDHRRQPLPLVDANSGGGSFIAGRALGSDDSDSDPEGPDGGLGRAGSWCGAGGLPAGGGGIIGAMRRPLPPKKRWETAFEAWAGGGEKNKGCVALPQPAAVAAAEAAKE-----VEDRYPCLAGRAEESALVTVREVRRAEALLEGGAGTAXXXXXXXXXXXXXXVCRLVVEGGIE-----------------VTD--DRAP-GVANAWAGFPVAAAVVAGGVADSAGVGAGASILKVEESSMRGRSAAEVTKAMFAALLKR--TGKHAKSAATV--RLVIVTPPWLASAPPPGGGVDNKAGASAPASSYDG-VGGMACLGREGHEGREFVELCWSVFMASGGGVLPPTDRDSPASRA--GERPAEQDAEVARRLGFDVERRELSQWMECIEVSSITPDGVAARHGLQPKDLLLAVDGNHLLSTTEASFWLEVGRTLRACDTAFQTKKGGSKASTTAXXXXXXXXXXXXXGQDAFERLSA--GHDDDSDWLRFLVFRKCAXXXXXXXXXXXXXXXXXXXXLAIAGRAKRPVGRPMGSMESKKGVLAGGAGRGVTGQKEEVSRGLLP-WQLSRELPEAAAXXXXXXXXXXXXXXXXXXXXXSAKR-----------------------------------------GKLDDHAQXXXXXXEKARLERDEKRKRLAIRRRPAWWQPQQRGSHRAVLVLRPADALPGATPGAPVPTGAFLLEDTVLGDKLTIPAGAKLLSVDGTPTGHLDFKTAREVALTAGAKSVLAFE 1172
BLAST of mRNA_C-linearis_contig7.14464.1 vs. uniprot
Match: D7G0M9_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0M9_ECTSI) HSP 1 Score: 399 bits (1024), Expect = 9.700e-116 Identity = 470/1076 (43.68%), Postives = 544/1076 (50.56%), Query Frame = 3
Query: 825 YDRLVSHLRRNKLAGSCGASEVGLAYLRSLGGRVKGKGGSPSLG------LGGXXXXXXXXXXXXXXXXXXXXXXXXXXSVVSAVERTGAKNLWPCPVCAKMFHRVGTHIHRSDCKIVQGWRPDATMECQCCGKTIGVTVELLRQHSKVCSAAAGNGNTNPAXXXXXXXXXXXXXXXXXXXXXXXXXGAVPSPHMLVRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG-----------------------------------------------------------SFSGGRALGSDGSESDPLGSTDWAG-GGXXXXXXXXXXXXXXFFGAMRRPLPPKKRWETAFEAWAGSGGGAAA--------------ASGVGEDDPDGVEARYPSLMKRAEESDLVTIREVRRAXXXXXXXXXXXX---------EAVVVCRVWANGGVEKRHRGDPGGVAAALGLAVADESDRLPRGGGSTARGFPLVAAVAARSVAEAAGIVAGARILKVEEAAMKGRSAADASKAVLDALLKRKKTRPKAGDEASVVARIVIVTPPWPSXXXXXXXXXXXXXXXXXXXXXXXXXAGGMACLSRKGGKGRDFVELCWSVLMVHGGGVPPPTGGSLAASEVVPGERPAAQDEEIARRLGFDVERRELSQGMGCIEVASVSPGGVAAKHGLRPKDLVLAVDGKHLLSTTASSFWLDVGNTLRACDFASREDKNPAAAPAVDAAVTTTGNSNHNHLDSFPGDH-NECFWLRFLVFRKDAAVLPNGAASAAXXXXXXXXXXXXXXXXXXXXXXPPGSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGGGKQPPSPQHPQRQASQQRLERDEKRKRLEARRRPAWWQPPEKGSHRTVLALRPADALPGATLGGPVAAGAFLLEGVVLGDKLTIPAGSKLLSVDGKPTGHLDFKAARDVALSAGPKSVLVFD 3782
++RL +HL RNK+ GS A L +L R G P++ +GG R +++LWPCPVC K F R+ TH+ SDCKIV W ATMEC+ CG+ + V ++L+QHSK C N XXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SF GRALGSD S+SDP G+ G G XXXXXXXXXX G MRRPLPPKKRWETAFEAWAG A+ V E VE RYP L RAEES LVT+REVRRA +AVVVCR+ A GG+E++ +G+ G VAA LG V D DR P G + GFP+ AAV A VA++AG+ GA ILKVE+++M+GRSA+D +KA+ ALLKR K G A+ V R+VIVTPPW + GGMACL R+ +GR+FVELCWSVLM GGGV PPT L AS GERPA QD E+ARRLGFDVERRELSQ M CIEV+SV+P GVAA+HGL+PKDL+LAVDG HLLSTT +SFWL+VG TLRACD AS+ +K+ A TT + N + + DH ++ WLRFLVFRK A XXX P GSM GG + + Q + +AS+ L R R+ L PA +G+ R VL PG G PV GAFLLE VLGDKLTIPAG+KLLSVDG PTGHLDF ARDVALSAG KSVL F+
Sbjct: 2 FERLSAHLTRNKVCGSTPAGRAQLEAFAALRKRSTAA-GRPAVARGDFPPVGGIAAAVVGSRRPKAGGVRDSGAKEGPAGSEGKGSRRRSESLWPCPVCTKSFRRISTHVQMSDCKIVLQWGAGATMECRNCGEVVDVVPDVLQQHSKRCRPRDKITNDEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFIAGRALGSDDSDSDPGGTDGGLGRAGSWSGXXXXXXXXXXXXGVMRRPLPPKKRWETAFEAWAGXXXXXXXXXXXXXXXXXXXXEAAEVCE-----VEDRYPCLASRAEESALVTVREVRRAEALPEGAAGTAPGEQQQQHRRQAVVVCRLVAEGGIERK-KGEAG-VAATLGFQVTD--DRAP-GVTNAWAGFPVAAAVVAEGVADSAGVGTGASILKVEDSSMRGRSASDVTKAMYAALLKR---TGKHGKSAATV-RLVIVTPPWSASAPTPGGGGVDNKAGAFAPASPYDGVGGMACLGRERHEGREFVELCWSVLMAPGGGVLPPTDVGLPASRA--GERPAEQDAEVARRLGFDVERRELSQWMECIEVSSVTPDGVAARHGLQPKDLLLAVDGNHLLSTTEASFWLEVGRTLRACDSASQTNKSGGKA------ATTNDSDNEDAFERLSADHGDDSDWLRFLVFRKCAXXXXXXXXXXXXXXLASAGRAKRPVGR------PKGSMESKKGALA-------------------------------------------------------------------------------------------------GGAGRGATGQ--KEEASRGLLPRQRSRE-LPGAAAPAPAPAGAEGAARHVLTPTSPSLPPGTRTGAPVPTGAFLLEDTVLGDKLTIPAGAKLLSVDGIPTGHLDFNTARDVALSAGAKSVLAFE 948 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig7.14464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig7.14464.1 >prot_C-linearis_contig7.14464.1 ID=prot_C-linearis_contig7.14464.1|Name=mRNA_C-linearis_contig7.14464.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1153bp MRGNAGGATRVCPDCRQDVSAAVGHECPVLATQARLQRQVAAGRNGGGGAback to top mRNA from alignment at C-linearis_contig7:2260316..2272129- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig7.14464.1 ID=mRNA_C-linearis_contig7.14464.1|Name=mRNA_C-linearis_contig7.14464.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=11814bp|location=Sequence derived from alignment at C-linearis_contig7:2260316..2272129- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig7:2260316..2272129- >mRNA_C-linearis_contig7.14464.1 ID=mRNA_C-linearis_contig7.14464.1|Name=mRNA_C-linearis_contig7.14464.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=6918bp|location=Sequence derived from alignment at C-linearis_contig7:2260316..2272129- (Chordaria linearis ClinC8C monoicous)back to top |