prot_C-linearis_contig7.14451.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig7.14451.1
Unique Nameprot_C-linearis_contig7.14451.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length287
Homology
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BLAST of mRNA_C-linearis_contig7.14451.1 vs. uniprot
Match: D7G1K8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1K8_ECTSI)

HSP 1 Score: 366 bits (940), Expect = 1.870e-124
Identity = 203/314 (64.65%), Postives = 221/314 (70.38%), Query Frame = 0 
Query:    1 MRSDIATIIAFGLSFCTIVHAAPTYSCFDPPDEGQTNPLGEGMEDVVGSDCCAALIDESDMFAGRFVVWDPVNCNHGPGDAPIAEAPLCRAHDTDGCRFCRETCDGFEGLCITCASIM-DALETSSPTPSPSDIGSTFEETPAPTT-TEATEAPFDIFPETPAPVXXXXXXXXXXXAATAAPVTPEPTPSPVTXXXXXXXXXVIP--------------------------ETSDCVCVNTMSAEEEAVLTRRNKAMVCDPTCSDGTDPVWDVLNCNYFALGQNCRACSNICDDQGDGSWIDPDGFPCKPCSAI 286
            MRSDIAT+IAFGL     V AAPTYSCFDPPDEGQTNPLGEGMEDVV S+CC ALIDESDM A R V+WDPVNCNHGPGD PIAEA LCRAHDTDGCRFC ++CDG+EGLCITC  ++ D L + SPTPSP    S F  TPAP   T ATEAPF IFP TPAPV   XX  XXXX                 XXXXXXXXX                             E SDC CVN++S EE AVLTRR+K MVCDPTCSD +D VW V+NCNYFALGQNCRACS++CDDQGDG+W+D DGFPCKPCSAI
Sbjct:    1 MRSDIATVIAFGLLSVCPVSAAPTYSCFDPPDEGQTNPLGEGMEDVVESECCEALIDESDMMADREVIWDPVNCNHGPGDEPIAEAYLCRAHDTDGCRFCHDSCDGYEGLCITCEEVLEDLLNSDSPTPSPDFETSEFPATPAPAILTAATEAPFGIFPATPAPVAPVXXPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPAPTAEASDCECVNSLSEEEMAVLTRRSKNMVCDPTCSDQSDLVWGVMNCNYFALGQNCRACSDLCDDQGDGTWLDQDGFPCKPCSAI 314
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig7.14451.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1K8_ECTSI1.870e-12464.65Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..286
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..21
score: 0.788

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig7contigC-linearis_contig7:2001116..2003749 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig7.14451.1mRNA_C-linearis_contig7.14451.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig7 2001116..2003749 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig7.14451.1 ID=prot_C-linearis_contig7.14451.1|Name=mRNA_C-linearis_contig7.14451.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=287bp
MRSDIATIIAFGLSFCTIVHAAPTYSCFDPPDEGQTNPLGEGMEDVVGSD
CCAALIDESDMFAGRFVVWDPVNCNHGPGDAPIAEAPLCRAHDTDGCRFC
RETCDGFEGLCITCASIMDALETSSPTPSPSDIGSTFEETPAPTTTEATE
APFDIFPETPAPVTPAPVTPAPVTAATAAPVTPEPTPSPVTVTPEPTTAP
VIPETSDCVCVNTMSAEEEAVLTRRNKAMVCDPTCSDGTDPVWDVLNCNY
FALGQNCRACSNICDDQGDGSWIDPDGFPCKPCSAI*
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