prot_C-linearis_contig112.1552.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig112.1552.1
Unique Nameprot_C-linearis_contig112.1552.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length256
Homology
BLAST of mRNA_C-linearis_contig112.1552.1 vs. uniprot
Match: D7FVT6_ECTSI (S1-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVT6_ECTSI)

HSP 1 Score: 278 bits (711), Expect = 4.370e-91
Identity = 172/239 (71.97%), Postives = 179/239 (74.90%), Query Frame = 0
Query:    1 MAGVGRRTLYRKSVTDDYLNSTPEPGENEEVALAQAPRGSNIIEIMLATGEPALALLPTRFRKLIWVKRGDFLITSTSAGDFETSAGEAGKVRHRVEHILNKDQIKHLKKRGLWPGDDAFGGAFPAAGPGSGTPRDGWGDAIAAKGDDNGGGXXXGADGRKGAGCDTGKAGAVGGAAPAASRAGELVGSD---GADGGGETRGGVERGAGGEXXXXXXXXXXDMSDLFVNNNRVAMMQL 236
            MAGVGRRTLYRKSVTDDYLNSTPEPGENEE+ LAQAPRGSNIIEIMLA GEP+LALLPTRFRKLIWVKRGD+LITSTSAGDFETSAGE GKVRHRVEHILNKDQIKHLKKR LWP DDAFGGA  AAG GS  PRDGWGDA+A    D GG    G     GA     K       A  A+ A + VGS    G DG GE   G        XXXXXXXXXX MSDLFVNNNR AMM+L
Sbjct:    1 MAGVGRRTLYRKSVTDDYLNSTPEPGENEEIVLAQAPRGSNIIEIMLANGEPSLALLPTRFRKLIWVKRGDYLITSTSAGDFETSAGETGKVRHRVEHILNKDQIKHLKKRELWPADDAFGGALLAAGAGSSGPRDGWGDAVA----DGGGSSDSGGSKGMGAAAIEEKGNXXXEVAATAATAEKEVGSGVKVGGDGAGEVPSGXXXXXXXXXXXXXXXXXXXMSDLFVNNNRAAMMRL 235          
BLAST of mRNA_C-linearis_contig112.1552.1 vs. uniprot
Match: A0A835YV91_9STRA (S1-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV91_9STRA)

HSP 1 Score: 147 bits (370), Expect = 3.000e-39
Identity = 77/162 (47.53%), Postives = 92/162 (56.79%), Query Frame = 0
Query:    1 MAGVGRRTLYRKSVTDDYLNSTPEPGENEEVALAQAPRGSNIIEIMLATGEPALALLPTRFRKLIWVKRGDFLITSTSAGDFETSA-----------------------------------------------GEAGKVRHRVEHILNKDQIKHLKKRGLWP 115
            MAGVGRRT YRKSV ++YL+  PEPGE   VA A   RGSN+IE+ L  GE +LA+LPTRFRKLIWVKRGD+++ STS GD ET                                                 GE GKVRHRVEH+L+KDQ+KH++K G WP
Sbjct:    1 MAGVGRRTNYRKSVQEEYLSGLPEPGEGTAVAKALGSRGSNVIEVELQCGEQSLAMLPTRFRKLIWVKRGDYVLVSTSTGDIETHTAAAAAHARYAVQCNAPAYRPAQRGAHASKPALRRRRSYRAVRTSALDGEEGKVRHRVEHVLSKDQVKHIRKIGKWP 162          
BLAST of mRNA_C-linearis_contig112.1552.1 vs. uniprot
Match: A0A7S2UVE6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVE6_9STRA)

HSP 1 Score: 139 bits (351), Expect = 3.890e-37
Identity = 67/120 (55.83%), Postives = 83/120 (69.17%), Query Frame = 0
Query:    2 AGVGRRTLYRKSVTDDYLNSTPEPGENEEVALAQAPRGSNIIEIMLATGEPALALLPTRFRKLIWVKRGDFLITSTSAGDFETSAGEAGKVRHRVEHILN-KDQIKHLKKRGLWPGDDAF 120
            AG GRRTLYRKSV + YLN TP P E E +      RGSNI+++    G  ALA+LPT+FRKLIWVKRGDFLI S S GD  T++G +GKV+  V H+L+ +DQ  HL+  G WPG+ A 
Sbjct:    1 AGSGRRTLYRKSVMESYLNDTPVPEEGERIVKVVESRGSNILQVQCPDGTKALAMLPTKFRKLIWVKRGDFLIVSESQGDVSTASGGSGKVKFMVSHVLHSRDQRAHLQSTGHWPGEFAL 120          
BLAST of mRNA_C-linearis_contig112.1552.1 vs. uniprot
Match: A0A7S1GDQ2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GDQ2_9STRA)

HSP 1 Score: 134 bits (337), Expect = 3.470e-36
Identity = 66/132 (50.00%), Postives = 84/132 (63.64%), Query Frame = 0
Query:    1 MAGVGRRTLYRKSVTDDYLNSTPEPGENEEVALAQAPRGSNIIEIMLATGEPALALLPTRFRKLIWVKRGDFLITSTSAGDFETSAGEAGKVRHRVEHILNKDQIKHLKKRGLWPG---DDAFGGAFPAAGP 129
            MAGV RR+ YRK+V    L+   EP E + +    A RGSN+++++   GE  L +LPTR+RKL+WVKRGD LI   +  DFET+ G+ G VR  V H+L KDQ+KHLKK G WP    DD   GA  A GP
Sbjct:    1 MAGVKRRSKYRKNVEASVLDEMHEPEEGQIIVRVVASRGSNLLDVVTEAGEGGLCMLPTRYRKLVWVKRGDHLIVDCADDDFETAGGDKGAVRFSVAHVLYKDQVKHLKKIGKWPAAFDDDGAAGAGAAGGP 132          
BLAST of mRNA_C-linearis_contig112.1552.1 vs. uniprot
Match: A0A4D9CWY1_9STRA (S1-like domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CWY1_9STRA)

HSP 1 Score: 135 bits (339), Expect = 3.560e-35
Identity = 68/125 (54.40%), Postives = 91/125 (72.80%), Query Frame = 0
Query:    1 MAGVGRRTLYRKSVTDDYLNSTPEPG--ENEEVALAQAPRGSNIIEIMLA----TGEP----ALALLPTRFRKLIWVKRGDFLITSTSAGDFETSAGEAGKVRHRVEHILNKDQIKHLKKRGLWP 115
            M+G GR++ YRKSVT++ L+S PEP     E VA     RG NI+++ +A    +GE     +LALLPT+FRKLIWVKRGDF+I S ++ DF+T+AGE GKV+  VEHIL K+Q+KHLK +G+WP
Sbjct:    1 MSGAGRKSAYRKSVTEEVLHSFPEPNVAAGERVARVVQSRGGNILQVNVAPDPKSGEDENGGSLALLPTKFRKLIWVKRGDFVIVSGTSHDFQTAAGEKGKVKFMVEHILYKEQVKHLKDQGMWP 125          
BLAST of mRNA_C-linearis_contig112.1552.1 vs. uniprot
Match: A0A812LGH3_9DINO (Eif1ad protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812LGH3_9DINO)

HSP 1 Score: 130 bits (328), Expect = 4.090e-34
Identity = 62/115 (53.91%), Postives = 78/115 (67.83%), Query Frame = 0
Query:    1 MAGVGRRTLYRKSVTDDYLNSTPEPGENEEVALAQAPRGSNIIEIMLATGEPALALLPTRFRKLIWVKRGDFLITSTSAGDFETSAGEAGKVRHRVEHILNKDQIKHLKKRGLWP 115
            MAGV RRT YRK V  D L++   P + +E+       GSNI+E+  A GE A  +LPT++RKLIWVKRGDFLI S  A D++T++G  G V++ VEHIL    IKHLKK GLWP
Sbjct:    1 MAGVKRRTKYRKQVEADVLDAFHTPEDGQEIVQIVQSHGSNILEVRDAEGENAKCILPTKYRKLIWVKRGDFLIVSKGAEDYDTASGNKGTVKYMVEHILTASSIKHLKKEGLWP 115          
BLAST of mRNA_C-linearis_contig112.1552.1 vs. uniprot
Match: A0A2D4BRF2_PYTIN (S1-like domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BRF2_PYTIN)

HSP 1 Score: 129 bits (325), Expect = 9.690e-34
Identity = 60/115 (52.17%), Postives = 80/115 (69.57%), Query Frame = 0
Query:    1 MAGVGRRTLYRKSVTDDYLNSTPEPGENEEVALAQAPRGSNIIEIMLATGEPALALLPTRFRKLIWVKRGDFLITSTSAGDFETSAGEAGKVRHRVEHILNKDQIKHLKKRGLWP 115
            M+G GR++ YRK VT+  L+  PEP ENE++    A RG N+ E+  A G  +L +LP +FRKLIWVKRGDFLI ++S  +  T+ G+ G V   VEHIL KDQIK+L+ +GLWP
Sbjct:    1 MSGSGRKSAYRKGVTNKVLHGNPEPQENEQIVRVIALRGGNLFEVQDAEGATSLTMLPAKFRKLIWVKRGDFLIVASSDNEVSTADGKKGAVTSIVEHILYKDQIKNLRTKGLWP 115          
BLAST of mRNA_C-linearis_contig112.1552.1 vs. uniprot
Match: A0A8K1C280_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C280_PYTOL)

HSP 1 Score: 128 bits (321), Expect = 3.830e-33
Identity = 63/115 (54.78%), Postives = 76/115 (66.09%), Query Frame = 0
Query:    1 MAGVGRRTLYRKSVTDDYLNSTPEPGENEEVALAQAPRGSNIIEIMLATGEPALALLPTRFRKLIWVKRGDFLITSTSAGDFETSAGEAGKVRHRVEHILNKDQIKHLKKRGLWP 115
            M+G GR++ YRK VT   L   PEP ENE +    A RGSN+ E+  A    +L +LPT+FRKLIWVKRGDFLI S   GD  TS G+ G V   VE IL KDQIK+L+ +GLWP
Sbjct:    1 MSGSGRKSAYRKGVTKKVLYDHPEPRENEAIVRVVALRGSNLFEVQHADASKSLTMLPTKFRKLIWVKRGDFLIVSGGDGDITTSEGKKGAVTSIVEAILYKDQIKNLRAKGLWP 115          
BLAST of mRNA_C-linearis_contig112.1552.1 vs. uniprot
Match: A0A196SLW6_BLAHN (RNA-binding protein EIF1AD n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SLW6_BLAHN)

HSP 1 Score: 125 bits (314), Expect = 2.620e-32
Identity = 56/110 (50.91%), Postives = 74/110 (67.27%), Query Frame = 0
Query:    6 RRTLYRKSVTDDYLNSTPEPGENEEVALAQAPRGSNIIEIMLATGEPALALLPTRFRKLIWVKRGDFLITSTSAGDFETSAGEAGKVRHRVEHILNKDQIKHLKKRGLWP 115
            R+T YRK VT   L+  P P ENE +A    PRG N+ E+ L  G+  LA+LPT+F KLIW+KRGD++I + S G F TS+G+   V   ++HIL KDQ+ H+KK GLWP
Sbjct:    6 RKTSYRKGVTSTTLDEYPVPKENEILARISNPRGGNVFEVELPDGQKVLAILPTKFNKLIWMKRGDYVIVTKSEGQFTTSSGKQNGVESMIQHILLKDQVNHIKKEGLWP 115          
BLAST of mRNA_C-linearis_contig112.1552.1 vs. uniprot
Match: A0A2R5GUD2_9STRA (S1-like domain-containing protein C146.08c n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GUD2_9STRA)

HSP 1 Score: 132 bits (333), Expect = 2.970e-32
Identity = 61/115 (53.04%), Postives = 79/115 (68.70%), Query Frame = 0
Query:    1 MAGVGRRTLYRKSVTDDYLNSTPEPGENEEVALAQAPRGSNIIEIMLATGEPALALLPTRFRKLIWVKRGDFLITSTSAGDFETSAGEAGKVRHRVEHILNKDQIKHLKKRGLWP 115
            M+G  RRT YRK V  D L   PEPGE EE+   +A  G N++E++   GE AL LLP +FRKL+W+KRG+FLI S S  D+ T+ G  G+V++ V HIL KDQIKHL++  LWP
Sbjct:    1 MSGAKRRTKYRKHVETDMLEGLPEPGEGEEIVRVEALCGGNMLEVLSPDGEKALCLLPAKFRKLVWIKRGNFLIASKSDEDYLTATGAKGRVKYTVVHILFKDQIKHLRQADLWP 115          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig112.1552.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVT6_ECTSI4.370e-9171.97S1-like domain-containing protein n=2 Tax=Ectocarp... [more]
A0A835YV91_9STRA3.000e-3947.53S1-like domain-containing protein n=1 Tax=Tribonem... [more]
A0A7S2UVE6_9STRA3.890e-3755.83Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S1GDQ2_9STRA3.470e-3650.00Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A4D9CWY1_9STRA3.560e-3554.40S1-like domain-containing protein n=3 Tax=Monodops... [more]
A0A812LGH3_9DINO4.090e-3453.91Eif1ad protein n=1 Tax=Symbiodinium sp. KB8 TaxID=... [more]
A0A2D4BRF2_PYTIN9.690e-3452.17S1-like domain-containing protein n=1 Tax=Pythium ... [more]
A0A8K1C280_PYTOL3.830e-3354.78Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A196SLW6_BLAHN2.620e-3250.91RNA-binding protein EIF1AD n=1 Tax=Blastocystis sp... [more]
A0A2R5GUD2_9STRA2.970e-3253.04S1-like domain-containing protein C146.08c n=1 Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001253Translation initiation factor 1A (eIF-1A)SMARTSM00652eIF1neu4coord: 24..115
e-value: 1.1E-10
score: 51.5
IPR006196RNA-binding domain, S1, IF1 typePFAMPF01176eIF-1acoord: 34..89
e-value: 5.7E-9
score: 35.7
IPR006196RNA-binding domain, S1, IF1 typePROSITEPS50832S1_IF1_TYPEcoord: 5..97
score: 9.534
IPR039294Probable RNA-binding protein EIF1ADPANTHERPTHR21641TRANSLATION INITIATION FACTOR-RELATEDcoord: 10..116
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 11..115

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig112contigC-linearis_contig112:434299..435626 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig112.1552.1mRNA_C-linearis_contig112.1552.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig112 434299..436230 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig112.1552.1 ID=prot_C-linearis_contig112.1552.1|Name=mRNA_C-linearis_contig112.1552.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=256bp
MAGVGRRTLYRKSVTDDYLNSTPEPGENEEVALAQAPRGSNIIEIMLATG
EPALALLPTRFRKLIWVKRGDFLITSTSAGDFETSAGEAGKVRHRVEHIL
NKDQIKHLKKRGLWPGDDAFGGAFPAAGPGSGTPRDGWGDAIAAKGDDNG
GGGGDGADGRKGAGCDTGKAGAVGGAAPAASRAGELVGSDGADGGGETRG
GVERGAGGEEEEEEEEEEEDMSDLFVNNNRVAMMQLRIDHEDDDEDSDSD
SDSDE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001253TIF_eIF-1A
IPR006196RNA-binding_domain_S1_IF1
IPR039294EIF1AD
IPR012340NA-bd_OB-fold