mRNA_C-linearis_contig112.1552.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig112.1552.1
Unique NamemRNA_C-linearis_contig112.1552.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig112.1552.1 vs. uniprot
Match: D7FVT6_ECTSI (S1-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVT6_ECTSI)

HSP 1 Score: 278 bits (710), Expect = 5.660e-88
Identity = 172/239 (71.97%), Postives = 179/239 (74.90%), Query Frame = 2 
Query:  605 MAGVGRRTLYRKSVTDDYLNSTPEPGENEEVALAQAPRGSNIIEIMLATGEPALALLPTRFRKLIWVKRGDFLITSTSAGDFETSAGEAGKVRHRVEHILNKDQIKHLKKRGLWPGDDAFGGAFPAAGPGSGTPRDGWGDAIAAKGDDNGGGXXXGADGRKGAGCDTGKAGAVGGAAPAASRAGELVGSD---GADGGGETRGGVERGAGGEXXXXXXXXXXDMSDLFVNNNRVAMMQL 1312
            MAGVGRRTLYRKSVTDDYLNSTPEPGENEE+ LAQAPRGSNIIEIMLA GEP+LALLPTRFRKLIWVKRGD+LITSTSAGDFETSAGE GKVRHRVEHILNKDQIKHLKKR LWP DDAFGGA  AAG GS  PRDGWGDA+A    D GG    G     GA     K       A  A+ A + VGS    G DG GE   G        XXXXXXXXXX MSDLFVNNNR AMM+L
Sbjct:    1 MAGVGRRTLYRKSVTDDYLNSTPEPGENEEIVLAQAPRGSNIIEIMLANGEPSLALLPTRFRKLIWVKRGDYLITSTSAGDFETSAGETGKVRHRVEHILNKDQIKHLKKRELWPADDAFGGALLAAGAGSSGPRDGWGDAVA----DGGGSSDSGGSKGMGAAAIEEKGNXXXEVAATAATAEKEVGSGVKVGGDGAGEVPSGXXXXXXXXXXXXXXXXXXXMSDLFVNNNRAAMMRL 235
[Close]
BLAST of mRNA_C-linearis_contig112.1552.1 vs. uniprot
Match: A0A835YV91_9STRA (S1-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV91_9STRA)

HSP 1 Score: 146 bits (369), Expect = 5.530e-37
Identity = 77/162 (47.53%), Postives = 92/162 (56.79%), Query Frame = 2 
Query:  605 MAGVGRRTLYRKSVTDDYLNSTPEPGENEEVALAQAPRGSNIIEIMLATGEPALALLPTRFRKLIWVKRGDFLITSTSAGDFETSA-----------------------------------------------GEAGKVRHRVEHILNKDQIKHLKKRGLWP 949
            MAGVGRRT YRKSV ++YL+  PEPGE   VA A   RGSN+IE+ L  GE +LA+LPTRFRKLIWVKRGD+++ STS GD ET                                                 GE GKVRHRVEH+L+KDQ+KH++K G WP
Sbjct:    1 MAGVGRRTNYRKSVQEEYLSGLPEPGEGTAVAKALGSRGSNVIEVELQCGEQSLAMLPTRFRKLIWVKRGDYVLVSTSTGDIETHTAAAAAHARYAVQCNAPAYRPAQRGAHASKPALRRRRSYRAVRTSALDGEEGKVRHRVEHVLSKDQVKHIRKIGKWP 162
[Close]
BLAST of mRNA_C-linearis_contig112.1552.1 vs. uniprot
Match: A0A7S2UVE6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVE6_9STRA)

HSP 1 Score: 139 bits (350), Expect = 5.780e-35
Identity = 67/120 (55.83%), Postives = 83/120 (69.17%), Query Frame = 2 
Query:  608 AGVGRRTLYRKSVTDDYLNSTPEPGENEEVALAQAPRGSNIIEIMLATGEPALALLPTRFRKLIWVKRGDFLITSTSAGDFETSAGEAGKVRHRVEHILN-KDQIKHLKKRGLWPGDDAF 964
            AG GRRTLYRKSV + YLN TP P E E +      RGSNI+++    G  ALA+LPT+FRKLIWVKRGDFLI S S GD  T++G +GKV+  V H+L+ +DQ  HL+  G WPG+ A 
Sbjct:    1 AGSGRRTLYRKSVMESYLNDTPVPEEGERIVKVVESRGSNILQVQCPDGTKALAMLPTKFRKLIWVKRGDFLIVSESQGDVSTASGGSGKVKFMVSHVLHSRDQRAHLQSTGHWPGEFAL 120
[Close]
BLAST of mRNA_C-linearis_contig112.1552.1 vs. uniprot
Match: A0A7S1GDQ2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GDQ2_9STRA)

HSP 1 Score: 134 bits (336), Expect = 4.340e-34
Identity = 66/132 (50.00%), Postives = 84/132 (63.64%), Query Frame = 2 
Query:  605 MAGVGRRTLYRKSVTDDYLNSTPEPGENEEVALAQAPRGSNIIEIMLATGEPALALLPTRFRKLIWVKRGDFLITSTSAGDFETSAGEAGKVRHRVEHILNKDQIKHLKKRGLWPG---DDAFGGAFPAAGP 991
            MAGV RR+ YRK+V    L+   EP E + +    A RGSN+++++   GE  L +LPTR+RKL+WVKRGD LI   +  DFET+ G+ G VR  V H+L KDQ+KHLKK G WP    DD   GA  A GP
Sbjct:    1 MAGVKRRSKYRKNVEASVLDEMHEPEEGQIIVRVVASRGSNLLDVVTEAGEGGLCMLPTRYRKLVWVKRGDHLIVDCADDDFETAGGDKGAVRFSVAHVLYKDQVKHLKKIGKWPAAFDDDGAAGAGAAGGP 132
[Close]
BLAST of mRNA_C-linearis_contig112.1552.1 vs. uniprot
Match: A0A4D9CWY1_9STRA (S1-like domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CWY1_9STRA)

HSP 1 Score: 134 bits (338), Expect = 4.580e-33
Identity = 68/125 (54.40%), Postives = 91/125 (72.80%), Query Frame = 2 
Query:  605 MAGVGRRTLYRKSVTDDYLNSTPEPG--ENEEVALAQAPRGSNIIEIMLA----TGEP----ALALLPTRFRKLIWVKRGDFLITSTSAGDFETSAGEAGKVRHRVEHILNKDQIKHLKKRGLWP 949
            M+G GR++ YRKSVT++ L+S PEP     E VA     RG NI+++ +A    +GE     +LALLPT+FRKLIWVKRGDF+I S ++ DF+T+AGE GKV+  VEHIL K+Q+KHLK +G+WP
Sbjct:    1 MSGAGRKSAYRKSVTEEVLHSFPEPNVAAGERVARVVQSRGGNILQVNVAPDPKSGEDENGGSLALLPTKFRKLIWVKRGDFVIVSGTSHDFQTAAGEKGKVKFMVEHILYKEQVKHLKDQGMWP 125
[Close]
BLAST of mRNA_C-linearis_contig112.1552.1 vs. uniprot
Match: A0A812LGH3_9DINO (Eif1ad protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812LGH3_9DINO)

HSP 1 Score: 130 bits (327), Expect = 4.580e-32
Identity = 62/115 (53.91%), Postives = 78/115 (67.83%), Query Frame = 2 
Query:  605 MAGVGRRTLYRKSVTDDYLNSTPEPGENEEVALAQAPRGSNIIEIMLATGEPALALLPTRFRKLIWVKRGDFLITSTSAGDFETSAGEAGKVRHRVEHILNKDQIKHLKKRGLWP 949
            MAGV RRT YRK V  D L++   P + +E+       GSNI+E+  A GE A  +LPT++RKLIWVKRGDFLI S  A D++T++G  G V++ VEHIL    IKHLKK GLWP
Sbjct:    1 MAGVKRRTKYRKQVEADVLDAFHTPEDGQEIVQIVQSHGSNILEVRDAEGENAKCILPTKYRKLIWVKRGDFLIVSKGAEDYDTASGNKGTVKYMVEHILTASSIKHLKKEGLWP 115
[Close]
BLAST of mRNA_C-linearis_contig112.1552.1 vs. uniprot
Match: A0A2D4BRF2_PYTIN (S1-like domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BRF2_PYTIN)

HSP 1 Score: 129 bits (324), Expect = 1.040e-31
Identity = 60/115 (52.17%), Postives = 80/115 (69.57%), Query Frame = 2 
Query:  605 MAGVGRRTLYRKSVTDDYLNSTPEPGENEEVALAQAPRGSNIIEIMLATGEPALALLPTRFRKLIWVKRGDFLITSTSAGDFETSAGEAGKVRHRVEHILNKDQIKHLKKRGLWP 949
            M+G GR++ YRK VT+  L+  PEP ENE++    A RG N+ E+  A G  +L +LP +FRKLIWVKRGDFLI ++S  +  T+ G+ G V   VEHIL KDQIK+L+ +GLWP
Sbjct:    1 MSGSGRKSAYRKGVTNKVLHGNPEPQENEQIVRVIALRGGNLFEVQDAEGATSLTMLPAKFRKLIWVKRGDFLIVASSDNEVSTADGKKGAVTSIVEHILYKDQIKNLRTKGLWP 115
[Close]
BLAST of mRNA_C-linearis_contig112.1552.1 vs. uniprot
Match: A0A8K1C280_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C280_PYTOL)

HSP 1 Score: 127 bits (320), Expect = 3.900e-31
Identity = 63/115 (54.78%), Postives = 76/115 (66.09%), Query Frame = 2 
Query:  605 MAGVGRRTLYRKSVTDDYLNSTPEPGENEEVALAQAPRGSNIIEIMLATGEPALALLPTRFRKLIWVKRGDFLITSTSAGDFETSAGEAGKVRHRVEHILNKDQIKHLKKRGLWP 949
            M+G GR++ YRK VT   L   PEP ENE +    A RGSN+ E+  A    +L +LPT+FRKLIWVKRGDFLI S   GD  TS G+ G V   VE IL KDQIK+L+ +GLWP
Sbjct:    1 MSGSGRKSAYRKGVTKKVLYDHPEPRENEAIVRVVALRGSNLFEVQHADASKSLTMLPTKFRKLIWVKRGDFLIVSGGDGDITTSEGKKGAVTSIVEAILYKDQIKNLRAKGLWP 115
[Close]
BLAST of mRNA_C-linearis_contig112.1552.1 vs. uniprot
Match: A0A196SLW6_BLAHN (RNA-binding protein EIF1AD n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SLW6_BLAHN)

HSP 1 Score: 125 bits (314), Expect = 1.740e-30
Identity = 56/110 (50.91%), Postives = 74/110 (67.27%), Query Frame = 2 
Query:  620 RRTLYRKSVTDDYLNSTPEPGENEEVALAQAPRGSNIIEIMLATGEPALALLPTRFRKLIWVKRGDFLITSTSAGDFETSAGEAGKVRHRVEHILNKDQIKHLKKRGLWP 949
            R+T YRK VT   L+  P P ENE +A    PRG N+ E+ L  G+  LA+LPT+F KLIW+KRGD++I + S G F TS+G+   V   ++HIL KDQ+ H+KK GLWP
Sbjct:    6 RKTSYRKGVTSTTLDEYPVPKENEILARISNPRGGNVFEVELPDGQKVLAILPTKFNKLIWMKRGDYVIVTKSEGQFTTSSGKQNGVESMIQHILLKDQVNHIKKEGLWP 115
[Close]
BLAST of mRNA_C-linearis_contig112.1552.1 vs. uniprot
Match: A0A2R5GUD2_9STRA (S1-like domain-containing protein C146.08c n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GUD2_9STRA)

HSP 1 Score: 132 bits (332), Expect = 3.620e-30
Identity = 61/115 (53.04%), Postives = 79/115 (68.70%), Query Frame = 2 
Query:  605 MAGVGRRTLYRKSVTDDYLNSTPEPGENEEVALAQAPRGSNIIEIMLATGEPALALLPTRFRKLIWVKRGDFLITSTSAGDFETSAGEAGKVRHRVEHILNKDQIKHLKKRGLWP 949
            M+G  RRT YRK V  D L   PEPGE EE+   +A  G N++E++   GE AL LLP +FRKL+W+KRG+FLI S S  D+ T+ G  G+V++ V HIL KDQIKHL++  LWP
Sbjct:    1 MSGAKRRTKYRKHVETDMLEGLPEPGEGEEIVRVEALCGGNMLEVLSPDGEKALCLLPAKFRKLVWIKRGNFLIASKSDEDYLTATGAKGRVKYTVVHILFKDQIKHLRQADLWP 115
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig112.1552.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVT6_ECTSI5.660e-8871.97S1-like domain-containing protein n=2 Tax=Ectocarp... [more]
A0A835YV91_9STRA5.530e-3747.53S1-like domain-containing protein n=1 Tax=Tribonem... [more]
A0A7S2UVE6_9STRA5.780e-3555.83Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S1GDQ2_9STRA4.340e-3450.00Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A4D9CWY1_9STRA4.580e-3354.40S1-like domain-containing protein n=3 Tax=Monodops... [more]
A0A812LGH3_9DINO4.580e-3253.91Eif1ad protein n=1 Tax=Symbiodinium sp. KB8 TaxID=... [more]
A0A2D4BRF2_PYTIN1.040e-3152.17S1-like domain-containing protein n=1 Tax=Pythium ... [more]
A0A8K1C280_PYTOL3.900e-3154.78Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A196SLW6_BLAHN1.740e-3050.91RNA-binding protein EIF1AD n=1 Tax=Blastocystis sp... [more]
A0A2R5GUD2_9STRA3.620e-3053.04S1-like domain-containing protein C146.08c n=1 Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig112contigC-linearis_contig112:434299..436230 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score282.3
Seed ortholog evalue2.2e-73
Seed eggNOG ortholog2880.D7FVT6
Preferred nameEIF1AD
KEGG koko:K15025
Hectar predicted targeting categoryother localisation
GOsGO:0002181,GO:0002183,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.translation initiation factor activity
EggNOG OGsKOG2925@1,KOG2925@2759
Ec32 ortholog descriptionRNA-binding domain, S1, IF1 type
Ec32 orthologEc-01_002080.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons3
Model size1372
Cds size768
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig112.1552.1prot_C-linearis_contig112.1552.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig112 434299..435626 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927495.3316705-CDS-C-linearis_contig112:434298..4347931622927495.3316705-CDS-C-linearis_contig112:434298..434793Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 434299..434793 -
1690879732.0146756-CDS-C-linearis_contig112:434298..4347931690879732.0146756-CDS-C-linearis_contig112:434298..434793Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 434299..434793 -
1622927495.3468359-CDS-C-linearis_contig112:435001..4351421622927495.3468359-CDS-C-linearis_contig112:435001..435142Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 435002..435142 -
1690879732.0363488-CDS-C-linearis_contig112:435001..4351421690879732.0363488-CDS-C-linearis_contig112:435001..435142Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 435002..435142 -
1622927495.3636787-CDS-C-linearis_contig112:435494..4356261622927495.3636787-CDS-C-linearis_contig112:435494..435626Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 435495..435626 -
1690879732.0484655-CDS-C-linearis_contig112:435494..4356261690879732.0484655-CDS-C-linearis_contig112:435494..435626Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 435495..435626 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927495.3787422-UTR-C-linearis_contig112:435626..4362301622927495.3787422-UTR-C-linearis_contig112:435626..436230Chordaria linearis ClinC8C monoicousUTRC-linearis_contig112 435627..436230 -
1690879732.0655015-UTR-C-linearis_contig112:435626..4362301690879732.0655015-UTR-C-linearis_contig112:435626..436230Chordaria linearis ClinC8C monoicousUTRC-linearis_contig112 435627..436230 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig112.1552.1

>prot_C-linearis_contig112.1552.1 ID=prot_C-linearis_contig112.1552.1|Name=mRNA_C-linearis_contig112.1552.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=256bp
MAGVGRRTLYRKSVTDDYLNSTPEPGENEEVALAQAPRGSNIIEIMLATG
EPALALLPTRFRKLIWVKRGDFLITSTSAGDFETSAGEAGKVRHRVEHIL
NKDQIKHLKKRGLWPGDDAFGGAFPAAGPGSGTPRDGWGDAIAAKGDDNG
GGGGDGADGRKGAGCDTGKAGAVGGAAPAASRAGELVGSDGADGGGETRG
GVERGAGGEEEEEEEEEEEDMSDLFVNNNRVAMMQLRIDHEDDDEDSDSD
SDSDE*
back to top

mRNA from alignment at C-linearis_contig112:434299..436230-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig112.1552.1 ID=mRNA_C-linearis_contig112.1552.1|Name=mRNA_C-linearis_contig112.1552.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1932bp|location=Sequence derived from alignment at C-linearis_contig112:434299..436230- (Chordaria linearis ClinC8C monoicous)
CGAGGGTTGTTGTGAGGATGGGTCAGTCTGCCCCTAATTGTTCCCTGGCC
CTCGTGGTAACGGCGGTGGAAACATGATCTCCTCGTTCGTCTAACGTGAA
CGCCGGCCCGAGACCATGCTTACGCACTACGGTATACAAGAGCGATGCCG
ACTAAACAATATGCCGCCGTCGATGTTTCCTCCCCAGCTGGTCGAGAATT
GGGGCATATTTGAACGGATGGGTTCTTGTGCTGGCTCTTCACGTGGGCTG
TTGTGTTTCCTAATGCAGACACTCTCTCACCACTTCAGACTATTAAATGT
CTAGATTACAGAGTAATGCCCGCCTTCGACGTTGTCCACACTCCTGGTGT
CCTTTGGCCGCACACACGCAGAACCAGAAACGCAAAACCATCACCGGTCC
GCCCAGAAAGAAGACCTCTGAAACCTACGACCACTCCGATCCGACGCAGC
AAGAAATCGGCGTGAAGACGCTTGGAACTCCCTCCTCCCACTGCTGTCGG
TCTCGTGGGTCTCGTGGAGATCTACTGCACTACCTGATACTCGTACGCGT
TTGTCGACAGCAGTTCAGAGCGACAAGCTCGTGGTTGCGGTTCGCTGAAA
CAAAATGGCGGGGGTCGGGAGGAGAACGCTGTACCGCAAGTCGGTGACGG
ATGACTATCTCAACAGCACGCCCGAGCCGGGAGAGAACGAGGAGGTCGCG
CTCGCCCAAGCTCCCAGAGGGTCCAACATCATCGAGGTGAGATTTCTTCT
CCTGTTTGTGTTTCGAAAACTATGCCAGCTAAACCGTTTACTGTCTCGCA
CTCTGCTGTTTGACGGCCCCGGTTGAGATTTGTGCATCTGCTGCGGATTT
CCTTCAATCACCGCGCAAACCCTCCACGAAAGTACTATAGAGATAACCCC
TCAATGTCCCGTGTGTCCTTGGAGACAAGACTTTGCACACAACAGGCTGC
GTGTTTTTTTTCTACTGCACGCGCAGGAAGCCGATCGCCCCCTTCCTCTC
CGCTTTCAGTCAGCAGCCTCCACGGGTACGCCGCGACTCACGCAGCCCCC
CCGCCGCCGCCTATCCTTGTCCCTACACCGCTGCACAGATCATGCTCGCC
ACCGGAGAACCGGCTCTGGCACTCCTGCCCACCAGATTCCGAAAGCTGAT
CTGGGTGAAGCGTGGGGATTTCCTCATAACGTCCACCTCCGCGGGAGACT
TCGAGACAAGCGCCGGGGAGGCCGGGAAAGTGAGTCCGTTTCACCTGGCT
TTGGCCCTTTGGTGCCGTGAGAAACCCACCACACGCTCACCGCGCTCCGT
GGTGCACAACAAACGCGCCAATCCTCCTCTTGTCCTTGCGTGCGTTCTGC
TGCCTGTGCCCCATCACACCCCGCCCGCGCCGTGCCCTCGGTTTGTGACG
GAATTTTCTCGCCGTTTTTTGTTGCCATGCTTAACAGGTGCGACATCGCG
TAGAACACATCCTCAACAAGGACCAGATAAAACACCTCAAGAAACGGGGC
CTCTGGCCGGGAGACGACGCCTTCGGAGGGGCTTTCCCCGCCGCCGGGCC
GGGGTCGGGCACCCCGAGAGACGGCTGGGGGGACGCGATAGCCGCGAAGG
GTGACGATAACGGCGGCGGCGGCGGTGATGGTGCGGACGGCAGAAAGGGA
GCGGGATGCGATACGGGAAAAGCGGGAGCGGTAGGGGGAGCGGCACCAGC
AGCCTCGAGAGCAGGAGAGTTAGTGGGCAGTGATGGTGCAGATGGGGGTG
GGGAGACCAGGGGGGGCGTGGAGCGCGGGGCGGGGGGAGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAAGACATGAGCGATTTGTTCGTGAACAACAA
CAGGGTGGCGATGATGCAGCTGAGAATAGACCACGAGGACGACGACGAGG
ATTCAGACTCCGACTCCGACTCGGACGAATGA
back to top

Coding sequence (CDS) from alignment at C-linearis_contig112:434299..436230-

>mRNA_C-linearis_contig112.1552.1 ID=mRNA_C-linearis_contig112.1552.1|Name=mRNA_C-linearis_contig112.1552.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1536bp|location=Sequence derived from alignment at C-linearis_contig112:434299..436230- (Chordaria linearis ClinC8C monoicous)
ATGGCGGGGGTCGGGAGGAGAACGCTGTACCGCAAGTCGGTGACGGATGA
CTATCTCAACAGCACGCCCGAGCCGGGAGAGAACGAGGAGGTCGCGCTCG
CCCAAGCTCCCAGAGGGTCCAACATCATCGAGATGGCGGGGGTCGGGAGG
AGAACGCTGTACCGCAAGTCGGTGACGGATGACTATCTCAACAGCACGCC
CGAGCCGGGAGAGAACGAGGAGGTCGCGCTCGCCCAAGCTCCCAGAGGGT
CCAACATCATCGAGATCATGCTCGCCACCGGAGAACCGGCTCTGGCACTC
CTGCCCACCAGATTCCGAAAGCTGATCTGGGTGAAGCGTGGGGATTTCCT
CATAACGTCCACCTCCGCGGGAGACTTCGAGACAAGCGCCGGGGAGGCCG
GGAAAATCATGCTCGCCACCGGAGAACCGGCTCTGGCACTCCTGCCCACC
AGATTCCGAAAGCTGATCTGGGTGAAGCGTGGGGATTTCCTCATAACGTC
CACCTCCGCGGGAGACTTCGAGACAAGCGCCGGGGAGGCCGGGAAAGTGC
GACATCGCGTAGAACACATCCTCAACAAGGACCAGATAAAACACCTCAAG
AAACGGGGCCTCTGGCCGGGAGACGACGCCTTCGGAGGGGCTTTCCCCGC
CGCCGGGCCGGGGTCGGGCACCCCGAGAGACGGCTGGGGGGACGCGATAG
CCGCGAAGGGTGACGATAACGGCGGCGGCGGCGGTGATGGTGCGGACGGC
AGAAAGGGAGCGGGATGCGATACGGGAAAAGCGGGAGCGGTAGGGGGAGC
GGCACCAGCAGCCTCGAGAGCAGGAGAGTTAGTGGGCAGTGATGGTGCAG
ATGGGGGTGGGGAGACCAGGGGGGGCGTGGAGCGCGGGGCGGGGGGAGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGACATGAGCGATTTGTTCGT
GAACAACAACAGGGTGGCGATGATGCAGCTGAGAATAGACCACGAGGACG
ACGACGAGGATTCAGACTCCGACTCCGACTCGGACGAATGAGTGCGACAT
CGCGTAGAACACATCCTCAACAAGGACCAGATAAAACACCTCAAGAAACG
GGGCCTCTGGCCGGGAGACGACGCCTTCGGAGGGGCTTTCCCCGCCGCCG
GGCCGGGGTCGGGCACCCCGAGAGACGGCTGGGGGGACGCGATAGCCGCG
AAGGGTGACGATAACGGCGGCGGCGGCGGTGATGGTGCGGACGGCAGAAA
GGGAGCGGGATGCGATACGGGAAAAGCGGGAGCGGTAGGGGGAGCGGCAC
CAGCAGCCTCGAGAGCAGGAGAGTTAGTGGGCAGTGATGGTGCAGATGGG
GGTGGGGAGACCAGGGGGGGCGTGGAGCGCGGGGCGGGGGGAGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAAGACATGAGCGATTTGTTCGTGAACA
ACAACAGGGTGGCGATGATGCAGCTGAGAATAGACCACGAGGACGACGAC
GAGGATTCAGACTCCGACTCCGACTCGGACGAATGA
back to top