prot_C-linearis_contig112.1548.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig112.1548.1
Unique Nameprot_C-linearis_contig112.1548.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length233
Homology
BLAST of mRNA_C-linearis_contig112.1548.1 vs. uniprot
Match: D7FVT2_ECTSI (RNase_PH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVT2_ECTSI)

HSP 1 Score: 364 bits (935), Expect = 6.990e-126
Identity = 199/227 (87.67%), Postives = 216/227 (95.15%), Query Frame = 0
Query:    6 TRRDGRKANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSARSERADGATVDVNFKPESGITTPADAEREALLRRSLEEVVLRSRYPRAVVSVVIQVIVDDGSVLSAALNAATMALLNAGVEMTGMALSVTCCITSSLAGRSVLLDPCKSEEGEAAATADVATLSVGGGVLSCRAVGLMSREEYFACCEAAAQGTTAVRSFVRLSAEQKVNREAETLR 232
            TRRDGR+ANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKS R ER++GAT+DV+FKPESGIT+ ADAE EALLRRSLEEVVLRSRYPR VVSV+IQVIVDDG+VLSAALNAATMALLNAGVEMTGMALSVTCCIT++++GRSVLLDPCK+EE +AAATA VATLS GGGVLSC AVG MS+EEYFACCEAA+ GTTAVRSFVRLSAEQKVNREAET+R
Sbjct:    4 TRRDGRRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSLRMERSEGATLDVSFKPESGITSSADAESEALLRRSLEEVVLRSRYPRTVVSVIIQVIVDDGAVLSAALNAATMALLNAGVEMTGMALSVTCCITATVSGRSVLLDPCKAEEIDAAATAVVATLSAGGGVLSCHAVGSMSQEEYFACCEAASLGTTAVRSFVRLSAEQKVNREAETVR 230          
BLAST of mRNA_C-linearis_contig112.1548.1 vs. uniprot
Match: A0A835ZF16_9STRA (Ribosomal protein S5 domain 2-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF16_9STRA)

HSP 1 Score: 185 bits (469), Expect = 6.160e-55
Identity = 113/236 (47.88%), Postives = 148/236 (62.71%), Query Frame = 0
Query:    9 DGRKANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSARSERADGATVDVNFKPESGITTPADAEREALLRRSLEEVVLRSRYPRAVVSVVIQVIVDDGSVLSAALNAATMALLNAGVEMTGMALSVTCCITSS-------------LAGRSVLLDPCKSEEGEAAATADVATLSVGGGVLSCRAVGLMSREEYFACCEAAAQGTTAVRSFVRLSAEQKVNREAETL 231
            DGR  +QIR L A+QGILNRADGS RF  GNTSVL AVYGPA     + E+ D A ++V+++ + G  T ADAERE  +RR+LEE V  +RYPR+V+SVV+QV+ DDGSVLSAA+NA  MAL++AGVEM GM ++ T C + S             L    + LDP  SEE    AT  +A L+   G+L+ +  G +  EE FA  EAA +   AV  ++R + E KV R+   L
Sbjct:    8 DGRTGDQIRGLFADQGILNRADGSVRFGAGNTSVLVAVYGPAQPAQQKKEKPDRAIIEVSWRADKGAQTSADAERELYVRRTLEEAVAVARYPRSVISVVVQVLCDDGSVLSAAINACAMALVDAGVEMIGMPVAATACFSGSGSAAAAAPEQLQHLGESHLQLDPSASEEATTRATVMLAVLAGSDGILTMKMTGQLGAEELFAASEAARKACDAVSVYLRRAVEAKVLRDVANL 243          
BLAST of mRNA_C-linearis_contig112.1548.1 vs. uniprot
Match: A0A067CJ13_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CJ13_SAPPC)

HSP 1 Score: 180 bits (457), Expect = 2.180e-53
Identity = 104/220 (47.27%), Postives = 142/220 (64.55%), Query Frame = 0
Query:    7 RRDGRKANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSARSERADGATVDVNFKPESGITTPADAEREALLRRSLEEVVLRSRYPRAVVSVVIQVIVDDGSVLSAALNAATMALLNAGVEMTGMALSVTCCITSSLAGRSVLLDPCKSEEGEAAATADVATLSVGGGVLSCRAVGLMSREEYFACCEAAAQGTTAVRSFVRLSAEQKVNR 226
            R DGR   +IRPLA EQG+LNRADGSARF  G TSVLA+V GPA AK  R E+A GAT++V FK E G  +  D E E +LR + E +++   +PRAVVS+ +QV+ DDG++L+ A+NA  +AL++AGV M  +  ++TC I   L    + LDP +SE   AAAT   A      G+L+    G++S E+YFAC E   +   +V +FVR+S E K N+
Sbjct:    7 REDGRLVQEIRPLACEQGLLNRADGSARFNHGTTSVLASVSGPAAAKLRRQEKATGATLEVTFKAEKGAPSARDKEYEMILRETFEPIIVLENFPRAVVSITVQVVEDDGALLAVAINAVNLALIDAGVPMRSIVGAITCSI---LEDGQLCLDPSRSEGETAAATVTTACCGNNDGILTSMTSGVLSEEQYFACSEICRRAIDSVLAFVRISQESKFNK 223          
BLAST of mRNA_C-linearis_contig112.1548.1 vs. uniprot
Match: A0A485KL27_9STRA (Aste57867_8748 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KL27_9STRA)

HSP 1 Score: 177 bits (449), Expect = 3.840e-52
Identity = 105/223 (47.09%), Postives = 140/223 (62.78%), Query Frame = 0
Query:    7 RRDGRKANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSARSERADGATVDVNFKPESGITTPADAEREALLRRSLEEVVLRSRYPRAVVSVVIQVIVDDGSVLSAALNAATMALLNAGVEMTGMALSVTCCITSSLAGRSVLLDPCKSEEGEAAATADVATLSVGGGVLSCRAVGLMSREEYFACCEAAAQGTTAVRSFVRLSAEQKVNREAE 229
            R DGR   +IRPL+ EQG+LNRADGSARF  G TSVLA+V GPA AK  R E+ D AT++V FK E G  T  D E EA+LR++ E +V    YPRAV+S+ +QV+ DDGS+L+ A+NA  +ALL+AG+ M  +  ++TC I   L    + LDP + E   AAAT   A      G+L+    G++S  +YFAC E   +   +V SFVR+S E K  +  E
Sbjct:    8 RGDGRLVQEIRPLSCEQGLLNRADGSARFSHGTTSVLASVNGPAAAKIRRQEKVDEATLEVVFKAEKGAPTARDKEYEAILRQTFEPIVYLENYPRAVISITVQVVEDDGSLLAVAINAVNLALLDAGIPMRCLVGAITCSI---LEDGQLCLDPARVEGETAAATVTSACAGNNDGILTSLTTGMLSESQYFACSEICRRAVDSVLSFVRISQETKFQKALE 227          
BLAST of mRNA_C-linearis_contig112.1548.1 vs. uniprot
Match: A0A1V9ZII6_9STRA (Exosome component Rrp46 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZII6_9STRA)

HSP 1 Score: 175 bits (444), Expect = 2.050e-51
Identity = 103/217 (47.47%), Postives = 141/217 (64.98%), Query Frame = 0
Query:    7 RRDGRKANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSARSERADGATVDVNFKPESGITTPADAEREALLRRSLEEVVLRSRYPRAVVSVVIQVIVDDGSVLSAALNAATMALLNAGVEMTGMALSVTCCITSSLAGRSVLLDPCKSEEGEAAATADVATLSVGGGVLSCRAVGLMSREEYFACCEAAAQGTTAVRSFVRLSAEQK 223
            R DGR   +IRPLA EQG+LNRADGS+RF  G TSVLA+V GPA AK  R E+   AT++V FKPE G  +  D E E +LR++ E ++L   +PRAV+SV +QV+ DDG++L+ A+NA  +ALL+AGV M G+  ++TC I   L    + LDP  SE   AAAT   A+     GVL+    G+++  +YFAC E   +G  +V +FVR++ E K
Sbjct:    8 REDGRLVQEIRPLACEQGLLNRADGSSRFNHGTTSVLASVSGPAAAKLRRQEKMHCATLEVVFKPEKGAASARDKEYEMILRQTFEPIILLENFPRAVISVTVQVVEDDGALLAVAINAVNLALLDAGVPMRGIVGAITCTI---LEDGQLCLDPSLSEGEAAAATVTTASCGNSDGVLTSMTSGVLTEAQYFACSEICRRGIDSVLAFVRIAQETK 221          
BLAST of mRNA_C-linearis_contig112.1548.1 vs. uniprot
Match: A0A024TBK6_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024TBK6_9STRA)

HSP 1 Score: 168 bits (426), Expect = 1.190e-48
Identity = 99/222 (44.59%), Postives = 139/222 (62.61%), Query Frame = 0
Query:    7 RRDGRKANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSARSERADGATVDVNFKPESGITTPADAEREALLRRSLEEVVLRSRYPRAVVSVVIQVIVDDGSVLSAALNAATMALLNAGVEMTGMALSVTCCITSSLAGRSVLLDPCKSEEGEAAATADVATLSVGGGVLSCRAVGLMSREEYFACCEAAAQGTTAVRSFVRLSAEQKVNREA 228
            R DGR   +IRPL+ EQG+LNRADGSARF  G+TSVLA+V GPA AK  R E+ D ATV+V FK + G  T  D E EA+L+++ + +V    YPRAV+S+ +QV+ DDGS+L+ A+NA  +ALL+AG+ M  +  ++TC I   L    + LDP  +E   A A+   A      G+L+    GL++  +YFA  E   +   +V SFVR++ E K  + A
Sbjct:   10 RDDGRLVQEIRPLSCEQGLLNRADGSARFCHGSTSVLASVNGPAAAKIRRHEKVDAATVEVVFKSDKGAPTARDKEYEAILKQTFDPIVYVENYPRAVISITVQVVEDDGSLLAVAINAVNLALLDAGIPMRSLVGAITCSI---LDDGQLCLDPSLTEGDAATASVTAAYAGKNDGILTSITTGLVNESQYFAASEICRRAIDSVLSFVRIAQESKFQKNA 228          
BLAST of mRNA_C-linearis_contig112.1548.1 vs. uniprot
Match: A0A833WKX0_PHYIN (3' exoribonuclease family domain 2 n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WKX0_PHYIN)

HSP 1 Score: 163 bits (412), Expect = 2.860e-46
Identity = 98/225 (43.56%), Postives = 143/225 (63.56%), Query Frame = 0
Query:    7 RRDGRKANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSARSERADGATVDVNFKPESGITTPADAEREALLRRSLEEVVLRSRYPRAVVSVVIQVIVDDGSV--------LSAALNAATMALLNAGVEMTGMALSVTCCITSSLAGRSVLLDPCKSEEGEAAATADVATLSVGGGVLSCRAVGLMSREEYFACCEAAAQGTTAVRSFVRLSAEQK 223
            R+DGR  N++RP A+EQG L RADGSAR   G+++VLAAVYGP  A++ R+E  D AT+DV FK E GI T  + E E ++R++   VVL   +PRAV+S+V+QVI D+GS+         + A+NA ++AL++AGV M  +  + +C I       ++ LDP  +EE EA +    A  S   GVL+C   GL+S E+YFAC EA  + + +V +F R+  ++K
Sbjct:   22 RQDGRAGNELRPFASEQGALFRADGSARMSHGSSTVLAAVYGPGQARNWRAENTDKATLDVCFKLEKGIMTSKEKEYEQIIRQTFAPVVLTDSFPRAVISIVVQVIEDNGSISFPLFLIIAALAINAVSLALMDAGVPMLSVVTATSCSIFDD---GNLYLDPTAAEEEEAVSWVTTARSSTSDGVLTCITNGLLSEEQYFACSEACQRASESVAAFFRIVQQKK 243          
BLAST of mRNA_C-linearis_contig112.1548.1 vs. uniprot
Match: A0A6G0WBP6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WBP6_9STRA)

HSP 1 Score: 161 bits (408), Expect = 5.910e-46
Identity = 99/219 (45.21%), Postives = 133/219 (60.73%), Query Frame = 0
Query:    5 TTRRDGRKANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSARSERADGATVDVNFKPESGITTPADAEREALLRRSLEEVVLRSRYPRAVVSVVIQVIVDDGSVLSAALNAATMALLNAGVEMTGMALSVTCCITSSLAGRSVLLDPCKSEEGEAAATADVATLSVGGGVLSCRAVGLMSREEYFACCEAAAQGTTAVRSFVRLSAEQK 223
            T R DGR   +IRPL+ EQ +LNRADGSARF  G +SVLA+V GPA AK  R E+   A+++V FK E G  T  D E EA+LR++ E ++    +PRAV+SV +QV+ DDGS+LS A+NA  +ALL+AG+ M  +  +VTC I   L      LD   +E   A A+   A      G+L+    G++S   YFAC E   +   +V SFVR+S E K
Sbjct:    7 TRREDGRLVQEIRPLSCEQSLLNRADGSARFSHGTSSVLASVNGPAAAKIRRQEKVSCASLEVTFKAEKGAPTARDKEYEAILRQTFEPIIYLENFPRAVISVTVQVVEDDGSLLSVAINAMNLALLDAGIPMRCLVGAVTCSI---LDDGQFCLDSSLTEGEAAVASVTSACAGNNDGILTSLTTGVLSESHYFACSEICRRAVGSVLSFVRISQETK 222          
BLAST of mRNA_C-linearis_contig112.1548.1 vs. uniprot
Match: A0A1V9ZVY3_9STRA (U4/U6 small nuclear ribonucleoprotein Prp4 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZVY3_9STRA)

HSP 1 Score: 169 bits (428), Expect = 5.480e-45
Identity = 96/217 (44.24%), Postives = 137/217 (63.13%), Query Frame = 0
Query:    7 RRDGRKANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSARSERADGATVDVNFKPESGITTPADAEREALLRRSLEEVVLRSRYPRAVVSVVIQVIVDDGSVLSAALNAATMALLNAGVEMTGMALSVTCCITSSLAGRSVLLDPCKSEEGEAAATADVATLSVGGGVLSCRAVGLMSREEYFACCEAAAQGTTAVRSFVRLSAEQK 223
            R DGR   +IRPLA EQG+LNRADGSARF  G TSV+A+V GPAPAK  R E  + AT+DV FK E G+ T  D E E +LR++ E ++L   +PR V+S+ +QV+ DDGS+L+ ++NA  +AL++AG+ M  +  ++TC   S L    + +DP   E   A AT   A  +    +L+    G+++ E+YFAC E   +   +V +FVR+S E K
Sbjct:  504 REDGRSVQEIRPLACEQGLLNRADGSARFNHGTTSVMASVSGPAPAKIRRQENVNQATLDVVFKAEKGVATARDKEYELILRQTFEPIILLENFPRTVISITVQVVEDDGSLLAVSINAINLALMDAGIPMRSVVGAITC---SVLEDSQLCIDPSLVENDTATATVTTACSANNHQILTSFTSGILTEEQYFACSEICRRAIDSVIAFVRISQESK 717          
BLAST of mRNA_C-linearis_contig112.1548.1 vs. uniprot
Match: A0A5D6XHQ5_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XHQ5_9STRA)

HSP 1 Score: 158 bits (400), Expect = 7.260e-45
Identity = 97/226 (42.92%), Postives = 140/226 (61.95%), Query Frame = 0
Query:    3 LATTRRDGRKANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSARSERADGATVDVNFKPESGITTPADAEREALLRRSLEEVVLRSRYPRAVVSVVIQVIVDDGSVLSAALNAATMALLNAGVEMTGMALSVTCCITSSLAGRSVLLDPCKSEEGEAAATADVATLSVGGGVLSCRAVGLMSREEYFACCEAAAQGTTAVRSFVRLSAEQKVNREA 228
            +AT R DGR  N++RPLA+EQG L RADGSAR   G+++VL AVYGP  AKS RSE+   A +DV FK E G+ T  + E E ++R++ E VV+   +PRAV+S+V+Q       +LS A+NA ++ALL+AGV MT +  S TC +   L   ++ LDP ++EE  + +    A  S    VL+    GL++ E+YFAC EA  +   +V +F R+  ++K    A
Sbjct:    1 MATKRHDGRAGNELRPLASEQGALFRADGSARVAHGSSAVLVAVYGPGQAKSRRSEKLHRAALDVCFKLEKGVLTSKEKEYEQVIRQTFEPVVVTENFPRAVISIVVQ------HLLSVAINAVSLALLDAGVPMTSVVTSATCGL---LPDGTLFLDPSQAEEELSTSLVTTACSSTSDSVLTSLTNGLLTEEQYFACSEACRRAAESVHAFFRIVQQKKYEANA 217          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig112.1548.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVT2_ECTSI6.990e-12687.67RNase_PH domain-containing protein n=2 Tax=Ectocar... [more]
A0A835ZF16_9STRA6.160e-5547.88Ribosomal protein S5 domain 2-type protein n=1 Tax... [more]
A0A067CJ13_SAPPC2.180e-5347.27Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A485KL27_9STRA3.840e-5247.09Aste57867_8748 protein n=1 Tax=Aphanomyces stellat... [more]
A0A1V9ZII6_9STRA2.050e-5147.47Exosome component Rrp46 n=1 Tax=Achlya hypogyna Ta... [more]
A0A024TBK6_9STRA1.190e-4844.59Uncharacterized protein n=2 Tax=Aphanomyces TaxID=... [more]
A0A833WKX0_PHYIN2.860e-4643.563' exoribonuclease family domain 2 n=1 Tax=Phytoph... [more]
A0A6G0WBP6_9STRA5.910e-4645.21Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A1V9ZVY3_9STRA5.480e-4544.24U4/U6 small nuclear ribonucleoprotein Prp4 n=1 Tax... [more]
A0A5D6XHQ5_9STRA7.260e-4542.92Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027408PNPase/RNase PH domain superfamilyGENE3D3.30.230.70coord: 4..231
e-value: 1.1E-56
score: 193.9
IPR001247Exoribonuclease, phosphorolytic domain 1PFAMPF01138RNase_PHcoord: 15..136
e-value: 7.4E-25
score: 88.0
NoneNo IPR availablePANTHERPTHR11953EXOSOME COMPLEX COMPONENTcoord: 7..226
NoneNo IPR availablePANTHERPTHR11953:SF1EXOSOME COMPLEX COMPONENT RRP46coord: 7..226
IPR036345Exoribonuclease, PH domain 2 superfamilySUPERFAMILY55666Ribonuclease PH domain 2-likecoord: 137..224
IPR020568Ribosomal protein S5 domain 2-type foldSUPERFAMILY54211Ribosomal protein S5 domain 2-likecoord: 6..166

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig112contigC-linearis_contig112:408362..409865 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig112.1548.1mRNA_C-linearis_contig112.1548.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig112 408259..409979 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig112.1548.1 ID=prot_C-linearis_contig112.1548.1|Name=mRNA_C-linearis_contig112.1548.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=233bp
MALATTRRDGRKANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPA
PAKSARSERADGATVDVNFKPESGITTPADAEREALLRRSLEEVVLRSRY
PRAVVSVVIQVIVDDGSVLSAALNAATMALLNAGVEMTGMALSVTCCITS
SLAGRSVLLDPCKSEEGEAAATADVATLSVGGGVLSCRAVGLMSREEYFA
CCEAAAQGTTAVRSFVRLSAEQKVNREAETLR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027408PNPase/RNase_PH_dom_sf
IPR001247ExoRNase_PH_dom1
IPR036345ExoRNase_PH_dom2_sf
IPR020568Ribosomal_S5_D2-typ_fold