mRNA_C-linearis_contig112.1548.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig112.1548.1
Unique NamemRNA_C-linearis_contig112.1548.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig112.1548.1 vs. uniprot
Match: D7FVT2_ECTSI (RNase_PH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVT2_ECTSI)

HSP 1 Score: 367 bits (942), Expect = 9.770e-126
Identity = 199/227 (87.67%), Postives = 216/227 (95.15%), Query Frame = 1
Query:  130 TRRDGRKANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSARSERADGATVDVNFKPESGITTPADAEREALLRRSLEEVVLRSRYPRAVVSVVIQVIVDDGSVLSAALNAATMALLNAGVEMTGMALSVTCCITSSLAGRSVLLDPCKSEEGEAAATADVATLSVGGGVLSCRAVGLMSREEYFACCEAAAQGTTAVRSFVRLSAEQKVNREAETLR 810
            TRRDGR+ANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKS R ER++GAT+DV+FKPESGIT+ ADAE EALLRRSLEEVVLRSRYPR VVSV+IQVIVDDG+VLSAALNAATMALLNAGVEMTGMALSVTCCIT++++GRSVLLDPCK+EE +AAATA VATLS GGGVLSC AVG MS+EEYFACCEAA+ GTTAVRSFVRLSAEQKVNREAET+R
Sbjct:    4 TRRDGRRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSLRMERSEGATLDVSFKPESGITSSADAESEALLRRSLEEVVLRSRYPRTVVSVIIQVIVDDGAVLSAALNAATMALLNAGVEMTGMALSVTCCITATVSGRSVLLDPCKAEEIDAAATAVVATLSAGGGVLSCHAVGSMSQEEYFACCEAASLGTTAVRSFVRLSAEQKVNREAETVR 230          
BLAST of mRNA_C-linearis_contig112.1548.1 vs. uniprot
Match: A0A835ZF16_9STRA (Ribosomal protein S5 domain 2-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF16_9STRA)

HSP 1 Score: 187 bits (476), Expect = 5.820e-55
Identity = 114/238 (47.90%), Postives = 149/238 (62.61%), Query Frame = 1
Query:  133 RRDGRKANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSARSERADGATVDVNFKPESGITTPADAEREALLRRSLEEVVLRSRYPRAVVSVVIQVIVDDGSVLSAALNAATMALLNAGVEMTGMALSVTCCITSS-------------LAGRSVLLDPCKSEEGEAAATADVATLSVGGGVLSCRAVGLMSREEYFACCEAAAQGTTAVRSFVRLSAEQKVNREAETL 807
            R DGR  +QIR L A+QGILNRADGS RF  GNTSVL AVYGPA     + E+ D A ++V+++ + G  T ADAERE  +RR+LEE V  +RYPR+V+SVV+QV+ DDGSVLSAA+NA  MAL++AGVEM GM ++ T C + S             L    + LDP  SEE    AT  +A L+   G+L+ +  G +  EE FA  EAA +   AV  ++R + E KV R+   L
Sbjct:    6 RFDGRTGDQIRGLFADQGILNRADGSVRFGAGNTSVLVAVYGPAQPAQQKKEKPDRAIIEVSWRADKGAQTSADAERELYVRRTLEEAVAVARYPRSVISVVVQVLCDDGSVLSAAINACAMALVDAGVEMIGMPVAATACFSGSGSAAAAAPEQLQHLGESHLQLDPSASEEATTRATVMLAVLAGSDGILTMKMTGQLGAEELFAASEAARKACDAVSVYLRRAVEAKVLRDVANL 243          
BLAST of mRNA_C-linearis_contig112.1548.1 vs. uniprot
Match: A0A067CJ13_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CJ13_SAPPC)

HSP 1 Score: 182 bits (463), Expect = 2.840e-53
Identity = 104/220 (47.27%), Postives = 142/220 (64.55%), Query Frame = 1
Query:  133 RRDGRKANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSARSERADGATVDVNFKPESGITTPADAEREALLRRSLEEVVLRSRYPRAVVSVVIQVIVDDGSVLSAALNAATMALLNAGVEMTGMALSVTCCITSSLAGRSVLLDPCKSEEGEAAATADVATLSVGGGVLSCRAVGLMSREEYFACCEAAAQGTTAVRSFVRLSAEQKVNR 792
            R DGR   +IRPLA EQG+LNRADGSARF  G TSVLA+V GPA AK  R E+A GAT++V FK E G  +  D E E +LR + E +++   +PRAVVS+ +QV+ DDG++L+ A+NA  +AL++AGV M  +  ++TC I   L    + LDP +SE   AAAT   A      G+L+    G++S E+YFAC E   +   +V +FVR+S E K N+
Sbjct:    7 REDGRLVQEIRPLACEQGLLNRADGSARFNHGTTSVLASVSGPAAAKLRRQEKATGATLEVTFKAEKGAPSARDKEYEMILRETFEPIIVLENFPRAVVSITVQVVEDDGALLAVAINAVNLALIDAGVPMRSIVGAITCSI---LEDGQLCLDPSRSEGETAAATVTTACCGNNDGILTSMTSGVLSEEQYFACSEICRRAIDSVLAFVRISQESKFNK 223          
BLAST of mRNA_C-linearis_contig112.1548.1 vs. uniprot
Match: A0A485KL27_9STRA (Aste57867_8748 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KL27_9STRA)

HSP 1 Score: 179 bits (455), Expect = 4.940e-52
Identity = 105/223 (47.09%), Postives = 140/223 (62.78%), Query Frame = 1
Query:  133 RRDGRKANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSARSERADGATVDVNFKPESGITTPADAEREALLRRSLEEVVLRSRYPRAVVSVVIQVIVDDGSVLSAALNAATMALLNAGVEMTGMALSVTCCITSSLAGRSVLLDPCKSEEGEAAATADVATLSVGGGVLSCRAVGLMSREEYFACCEAAAQGTTAVRSFVRLSAEQKVNREAE 801
            R DGR   +IRPL+ EQG+LNRADGSARF  G TSVLA+V GPA AK  R E+ D AT++V FK E G  T  D E EA+LR++ E +V    YPRAV+S+ +QV+ DDGS+L+ A+NA  +ALL+AG+ M  +  ++TC I   L    + LDP + E   AAAT   A      G+L+    G++S  +YFAC E   +   +V SFVR+S E K  +  E
Sbjct:    8 RGDGRLVQEIRPLSCEQGLLNRADGSARFSHGTTSVLASVNGPAAAKIRRQEKVDEATLEVVFKAEKGAPTARDKEYEAILRQTFEPIVYLENYPRAVISITVQVVEDDGSLLAVAINAVNLALLDAGIPMRCLVGAITCSI---LEDGQLCLDPARVEGETAAATVTSACAGNNDGILTSLTTGMLSESQYFACSEICRRAVDSVLSFVRISQETKFQKALE 227          
BLAST of mRNA_C-linearis_contig112.1548.1 vs. uniprot
Match: A0A1V9ZII6_9STRA (Exosome component Rrp46 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZII6_9STRA)

HSP 1 Score: 177 bits (450), Expect = 2.610e-51
Identity = 103/220 (46.82%), Postives = 142/220 (64.55%), Query Frame = 1
Query:  133 RRDGRKANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSARSERADGATVDVNFKPESGITTPADAEREALLRRSLEEVVLRSRYPRAVVSVVIQVIVDDGSVLSAALNAATMALLNAGVEMTGMALSVTCCITSSLAGRSVLLDPCKSEEGEAAATADVATLSVGGGVLSCRAVGLMSREEYFACCEAAAQGTTAVRSFVRLSAEQKVNR 792
            R DGR   +IRPLA EQG+LNRADGS+RF  G TSVLA+V GPA AK  R E+   AT++V FKPE G  +  D E E +LR++ E ++L   +PRAV+SV +QV+ DDG++L+ A+NA  +ALL+AGV M G+  ++TC I   L    + LDP  SE   AAAT   A+     GVL+    G+++  +YFAC E   +G  +V +FVR++ E K  +
Sbjct:    8 REDGRLVQEIRPLACEQGLLNRADGSSRFNHGTTSVLASVSGPAAAKLRRQEKMHCATLEVVFKPEKGAASARDKEYEMILRQTFEPIILLENFPRAVISVTVQVVEDDGALLAVAINAVNLALLDAGVPMRGIVGAITCTI---LEDGQLCLDPSLSEGEAAAATVTTASCGNSDGVLTSMTSGVLTEAQYFACSEICRRGIDSVLAFVRIAQETKFQK 224          
BLAST of mRNA_C-linearis_contig112.1548.1 vs. uniprot
Match: A0A024TBK6_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024TBK6_9STRA)

HSP 1 Score: 171 bits (432), Expect = 1.470e-48
Identity = 99/222 (44.59%), Postives = 139/222 (62.61%), Query Frame = 1
Query:  133 RRDGRKANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSARSERADGATVDVNFKPESGITTPADAEREALLRRSLEEVVLRSRYPRAVVSVVIQVIVDDGSVLSAALNAATMALLNAGVEMTGMALSVTCCITSSLAGRSVLLDPCKSEEGEAAATADVATLSVGGGVLSCRAVGLMSREEYFACCEAAAQGTTAVRSFVRLSAEQKVNREA 798
            R DGR   +IRPL+ EQG+LNRADGSARF  G+TSVLA+V GPA AK  R E+ D ATV+V FK + G  T  D E EA+L+++ + +V    YPRAV+S+ +QV+ DDGS+L+ A+NA  +ALL+AG+ M  +  ++TC I   L    + LDP  +E   A A+   A      G+L+    GL++  +YFA  E   +   +V SFVR++ E K  + A
Sbjct:   10 RDDGRLVQEIRPLSCEQGLLNRADGSARFCHGSTSVLASVNGPAAAKIRRHEKVDAATVEVVFKSDKGAPTARDKEYEAILKQTFDPIVYVENYPRAVISITVQVVEDDGSLLAVAINAVNLALLDAGIPMRSLVGAITCSI---LDDGQLCLDPSLTEGDAATASVTAAYAGKNDGILTSITTGLVNESQYFAASEICRRAIDSVLSFVRIAQESKFQKNA 228          
BLAST of mRNA_C-linearis_contig112.1548.1 vs. uniprot
Match: A0A833WKX0_PHYIN (3' exoribonuclease family domain 2 n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WKX0_PHYIN)

HSP 1 Score: 166 bits (421), Expect = 1.230e-46
Identity = 102/238 (42.86%), Postives = 149/238 (62.61%), Query Frame = 1
Query:  103 LSPRMALATT---RRDGRKANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSARSERADGATVDVNFKPESGITTPADAEREALLRRSLEEVVLRSRYPRAVVSVVIQVIVDDGSV--------LSAALNAATMALLNAGVEMTGMALSVTCCITSSLAGRSVLLDPCKSEEGEAAATADVATLSVGGGVLSCRAVGLMSREEYFACCEAAAQGTTAVRSFVRLSAEQK 783
            L+ R A+  T   R+DGR  N++RP A+EQG L RADGSAR   G+++VLAAVYGP  A++ R+E  D AT+DV FK E GI T  + E E ++R++   VVL   +PRAV+S+V+QVI D+GS+         + A+NA ++AL++AGV M  +  + +C I       ++ LDP  +EE EA +    A  S   GVL+C   GL+S E+YFAC EA  + + +V +F R+  ++K
Sbjct:    9 LNNRQAMVATNLQRQDGRAGNELRPFASEQGALFRADGSARMSHGSSTVLAAVYGPGQARNWRAENTDKATLDVCFKLEKGIMTSKEKEYEQIIRQTFAPVVLTDSFPRAVISIVVQVIEDNGSISFPLFLIIAALAINAVSLALMDAGVPMLSVVTATSCSIFDD---GNLYLDPTAAEEEEAVSWVTTARSSTSDGVLTCITNGLLSEEQYFACSEACQRASESVAAFFRIVQQKK 243          
BLAST of mRNA_C-linearis_contig112.1548.1 vs. uniprot
Match: A0A6G0WBP6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WBP6_9STRA)

HSP 1 Score: 163 bits (413), Expect = 9.890e-46
Identity = 99/219 (45.21%), Postives = 133/219 (60.73%), Query Frame = 1
Query:  127 TTRRDGRKANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSARSERADGATVDVNFKPESGITTPADAEREALLRRSLEEVVLRSRYPRAVVSVVIQVIVDDGSVLSAALNAATMALLNAGVEMTGMALSVTCCITSSLAGRSVLLDPCKSEEGEAAATADVATLSVGGGVLSCRAVGLMSREEYFACCEAAAQGTTAVRSFVRLSAEQK 783
            T R DGR   +IRPL+ EQ +LNRADGSARF  G +SVLA+V GPA AK  R E+   A+++V FK E G  T  D E EA+LR++ E ++    +PRAV+SV +QV+ DDGS+LS A+NA  +ALL+AG+ M  +  +VTC I   L      LD   +E   A A+   A      G+L+    G++S   YFAC E   +   +V SFVR+S E K
Sbjct:    7 TRREDGRLVQEIRPLSCEQSLLNRADGSARFSHGTSSVLASVNGPAAAKIRRQEKVSCASLEVTFKAEKGAPTARDKEYEAILRQTFEPIIYLENFPRAVISVTVQVVEDDGSLLSVAINAMNLALLDAGIPMRCLVGAVTCSI---LDDGQFCLDSSLTEGEAAVASVTSACAGNNDGILTSLTTGVLSESHYFACSEICRRAVGSVLSFVRISQETK 222          
BLAST of mRNA_C-linearis_contig112.1548.1 vs. uniprot
Match: A0A1V9ZVY3_9STRA (U4/U6 small nuclear ribonucleoprotein Prp4 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZVY3_9STRA)

HSP 1 Score: 171 bits (434), Expect = 7.910e-45
Identity = 96/219 (43.84%), Postives = 138/219 (63.01%), Query Frame = 1
Query:  133 RRDGRKANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSARSERADGATVDVNFKPESGITTPADAEREALLRRSLEEVVLRSRYPRAVVSVVIQVIVDDGSVLSAALNAATMALLNAGVEMTGMALSVTCCITSSLAGRSVLLDPCKSEEGEAAATADVATLSVGGGVLSCRAVGLMSREEYFACCEAAAQGTTAVRSFVRLSAEQKVN 789
            R DGR   +IRPLA EQG+LNRADGSARF  G TSV+A+V GPAPAK  R E  + AT+DV FK E G+ T  D E E +LR++ E ++L   +PR V+S+ +QV+ DDGS+L+ ++NA  +AL++AG+ M  +  ++TC   S L    + +DP   E   A AT   A  +    +L+    G+++ E+YFAC E   +   +V +FVR+S E K +
Sbjct:  504 REDGRSVQEIRPLACEQGLLNRADGSARFNHGTTSVMASVSGPAPAKIRRQENVNQATLDVVFKAEKGVATARDKEYELILRQTFEPIILLENFPRTVISITVQVVEDDGSLLAVSINAINLALMDAGIPMRSVVGAITC---SVLEDSQLCIDPSLVENDTATATVTTACSANNHQILTSFTSGILTEEQYFACSEICRRAIDSVIAFVRISQESKFH 719          
BLAST of mRNA_C-linearis_contig112.1548.1 vs. uniprot
Match: A0A5D6XHQ5_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XHQ5_9STRA)

HSP 1 Score: 160 bits (406), Expect = 8.450e-45
Identity = 97/226 (42.92%), Postives = 140/226 (61.95%), Query Frame = 1
Query:  121 LATTRRDGRKANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSARSERADGATVDVNFKPESGITTPADAEREALLRRSLEEVVLRSRYPRAVVSVVIQVIVDDGSVLSAALNAATMALLNAGVEMTGMALSVTCCITSSLAGRSVLLDPCKSEEGEAAATADVATLSVGGGVLSCRAVGLMSREEYFACCEAAAQGTTAVRSFVRLSAEQKVNREA 798
            +AT R DGR  N++RPLA+EQG L RADGSAR   G+++VL AVYGP  AKS RSE+   A +DV FK E G+ T  + E E ++R++ E VV+   +PRAV+S+V+Q       +LS A+NA ++ALL+AGV MT +  S TC +   L   ++ LDP ++EE  + +    A  S    VL+    GL++ E+YFAC EA  +   +V +F R+  ++K    A
Sbjct:    1 MATKRHDGRAGNELRPLASEQGALFRADGSARVAHGSSAVLVAVYGPGQAKSRRSEKLHRAALDVCFKLEKGVLTSKEKEYEQVIRQTFEPVVVTENFPRAVISIVVQ------HLLSVAINAVSLALLDAGVPMTSVVTSATCGL---LPDGTLFLDPSQAEEELSTSLVTTACSSTSDSVLTSLTNGLLTEEQYFACSEACRRAAESVHAFFRIVQQKKYEANA 217          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig112.1548.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVT2_ECTSI9.770e-12687.67RNase_PH domain-containing protein n=2 Tax=Ectocar... [more]
A0A835ZF16_9STRA5.820e-5547.90Ribosomal protein S5 domain 2-type protein n=1 Tax... [more]
A0A067CJ13_SAPPC2.840e-5347.27Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A485KL27_9STRA4.940e-5247.09Aste57867_8748 protein n=1 Tax=Aphanomyces stellat... [more]
A0A1V9ZII6_9STRA2.610e-5146.82Exosome component Rrp46 n=1 Tax=Achlya hypogyna Ta... [more]
A0A024TBK6_9STRA1.470e-4844.59Uncharacterized protein n=2 Tax=Aphanomyces TaxID=... [more]
A0A833WKX0_PHYIN1.230e-4642.863' exoribonuclease family domain 2 n=1 Tax=Phytoph... [more]
A0A6G0WBP6_9STRA9.890e-4645.21Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A1V9ZVY3_9STRA7.910e-4543.84U4/U6 small nuclear ribonucleoprotein Prp4 n=1 Tax... [more]
A0A5D6XHQ5_9STRA8.450e-4542.92Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig112contigC-linearis_contig112:408259..409979 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score367.1
Seed ortholog evalue6.2e-99
Seed eggNOG ortholog2880.D7FVT2
Preferred nameEXOSC5
KEGG koko:K12590,ko:K12812
KEGG Pathwayko03013,ko03015,ko03018,ko03040,ko05164,map03013,map03015,map03018,map03040,map05164
KEGG ModuleM00391,M00406,M00430
Hectar predicted targeting categoryother localisation
GOsGO:0000175,GO:0000176,GO:0000177,GO:0000178,GO:0000184,GO:0000288,GO:0000291,GO:0000459,GO:0000460,GO:0000466,GO:0000467,GO:0000469,GO:0000737,GO:0000785,GO:0000956,GO:0002252,GO:0002376,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0003727,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004536,GO:0004540,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006304,GO:0006308,GO:0006309,GO:0006364,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006915,GO:0006921,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0008219,GO:0008408,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009615,GO:0009892,GO:0009893,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010605,GO:0010608,GO:0010629,GO:0012501,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016074,GO:0016075,GO:0016078,GO:0016180,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019219,GO:0019222,GO:0019439,GO:0019899,GO:0022411,GO:0022613,GO:0030262,GO:0031123,GO:0031125,GO:0031126,GO:0031323,GO:0031325,GO:0031329,GO:0031974,GO:0031981,GO:0032069,GO:0032070,GO:0032075,GO:0032077,GO:0032991,GO:0034427,GO:0034470,GO:0034472,GO:0034475,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0035327,GO:0042254,GO:0042802,GO:0043085,GO:0043144,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043487,GO:0043488,GO:0043628,GO:0043632,GO:0043633,GO:0043634,GO:0043928,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045006,GO:0045935,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051252,GO:0051336,GO:0051345,GO:0051607,GO:0051704,GO:0051707,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070478,GO:0070481,GO:0070651,GO:0071025,GO:0071027,GO:0071028,GO:0071029,GO:0071035,GO:0071038,GO:0071042,GO:0071046,GO:0071047,GO:0071051,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0097194,GO:0098542,GO:0140097,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1903311,GO:1905354
EggNOG free text desc.polyadenylation-dependent snoRNA 3'-end processing
EggNOG OGsCOG0689@1,KOG1069@2759
Ec32 ortholog descriptionRrp46 is a component of the exosome 3'->5' exoribonuclease complex, a complex that degrades mRNAs.
Ec32 orthologEc-01_002040.1
EC3.6.4.13
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019,ko03041
Exons2
Model size916
Cds size699
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig112.1548.1prot_C-linearis_contig112.1548.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig112 408362..409865 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927494.6735232-UTR-C-linearis_contig112:408258..4083611622927494.6735232-UTR-C-linearis_contig112:408258..408361Chordaria linearis ClinC8C monoicousUTRC-linearis_contig112 408259..408361 -
1690879731.642349-UTR-C-linearis_contig112:408258..4083611690879731.642349-UTR-C-linearis_contig112:408258..408361Chordaria linearis ClinC8C monoicousUTRC-linearis_contig112 408259..408361 -
1622927494.7468662-UTR-C-linearis_contig112:409865..4099791622927494.7468662-UTR-C-linearis_contig112:409865..409979Chordaria linearis ClinC8C monoicousUTRC-linearis_contig112 409866..409979 -
1690879731.6731577-UTR-C-linearis_contig112:409865..4099791690879731.6731577-UTR-C-linearis_contig112:409865..409979Chordaria linearis ClinC8C monoicousUTRC-linearis_contig112 409866..409979 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927494.7214856-CDS-C-linearis_contig112:408361..4087301622927494.7214856-CDS-C-linearis_contig112:408361..408730Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 408362..408730 -
1690879731.654538-CDS-C-linearis_contig112:408361..4087301690879731.654538-CDS-C-linearis_contig112:408361..408730Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 408362..408730 -
1622927494.7329397-CDS-C-linearis_contig112:409535..4098651622927494.7329397-CDS-C-linearis_contig112:409535..409865Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 409536..409865 -
1690879731.6638372-CDS-C-linearis_contig112:409535..4098651690879731.6638372-CDS-C-linearis_contig112:409535..409865Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 409536..409865 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig112.1548.1

>prot_C-linearis_contig112.1548.1 ID=prot_C-linearis_contig112.1548.1|Name=mRNA_C-linearis_contig112.1548.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=233bp
MALATTRRDGRKANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPA
PAKSARSERADGATVDVNFKPESGITTPADAEREALLRRSLEEVVLRSRY
PRAVVSVVIQVIVDDGSVLSAALNAATMALLNAGVEMTGMALSVTCCITS
SLAGRSVLLDPCKSEEGEAAATADVATLSVGGGVLSCRAVGLMSREEYFA
CCEAAAQGTTAVRSFVRLSAEQKVNREAETLR*
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mRNA from alignment at C-linearis_contig112:408259..409979-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig112.1548.1 ID=mRNA_C-linearis_contig112.1548.1|Name=mRNA_C-linearis_contig112.1548.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1721bp|location=Sequence derived from alignment at C-linearis_contig112:408259..409979- (Chordaria linearis ClinC8C monoicous)
CCCAACATCACCCCACACGCCGTTGTTGTGCAGTTTGGAAGGAGAGCAAC GTGCTCCGATCTCCCGTGCGCCTTCCCCCTCTTTGCCGTGAGCCCCCCTC CCCTCTCTCCGAGAATGGCGCTAGCAACAACCCGGCGAGACGGCCGGAAA GCCAACCAGATACGGCCTCTAGCCGCCGAGCAAGGCATCCTCAACAGAGC GGACGGCTCCGCCCGCTTCGTGCAGGGCAACACTTCCGTCCTCGCGGCCG TCTACGGGCCGGCCCCGGCCAAGTCGGCGAGGTCGGAGAGGGCCGACGGG GCGACGGTGGACGTGAACTTCAAGCCTGAGAGCGGGATAACTACGCCCGC CGACGCGGAGAGGGAGGCGCTGCTGAGGAGGTCGCTTGAGGAGGTGGTCT TGCGGTCGAGATATCCCAGGGCCGTGGTGTCTGTCGTCATTCAGGTGTGT GTTTGTGTGTGTGTGTGTGTGTGTGTGTGTACGTACGCGCGTATGTCGAG AAGGCGGCGTGCTGCAGTTTGTAGAACTGCTGTTGTAGGTGGTAAACTTG GATGCACACCTTACTGGCGCAAAACAGGACTGGTGCGTGACAATGTCAGC ACACCCAGCAGAGCAGCAAAGCTACAACAAACAAGGTGTGCAGGCACATG CAAAAAGGGCTGCCGGAGATACATGGCTCCCGCGCCGAAGAAGCGTCGGT TTGAGGAAGCGCGGAACCTGTCCCTGAGTTTGAATGAGAAGGCTTTTGAT CCTGACAGCCTGAGCTGTGTAGGGCAGTGCTGCACACCATCGTCGAGAAA GCGGCGGGTGGTTCCTTTGGGTGGGATGTACAGCAGTAGAACAAACCAAC AAACCCTGCGCGAGACAGACAACCTCCACAGCTGGTTTCGTTTTCGCGTA ACTTCTCTGTAGCGTGACTCTTGTGAGCTACAGCATTGGTATATGCTGCA ATGTTCGGCGGCGTGATTTGATTTGATTTGATTTGATTGTTGTCTTCACC AGGAGGGCCAGGTTGAAAGCCCCCTAAAATTACCCGGGGGTAGGTATGCT TCGAAGGATTCTATTGTATCACTCGTGCGAGTTGCTCGAGTGCCTGCCAT TTACCTTCGACACCTTTAGCCGACACCTTTAGCATGTGTTTCTTGCCTCA ACACCCATCAACTTTCCTCTATTTCTTAACACATCACTTCTGCATATATG TACATACATATGCGTCCTTATTAAACAAAACCAACAAACAACACAACAGG TGATCGTGGACGACGGCTCGGTCCTGAGCGCCGCCCTCAACGCCGCCACC ATGGCCCTCCTCAACGCGGGCGTCGAGATGACCGGCATGGCCCTCTCCGT AACCTGCTGCATCACCTCGTCCCTCGCCGGGAGGTCCGTCCTCCTGGACC CCTGCAAGTCGGAGGAGGGCGAGGCCGCCGCCACCGCCGACGTCGCCACC CTGTCGGTCGGCGGCGGGGTGCTGTCGTGCCGGGCTGTCGGGCTGATGAG CCGGGAGGAGTACTTCGCGTGCTGCGAGGCGGCGGCGCAGGGCACGACGG CCGTCCGGTCGTTTGTGAGGCTGTCCGCGGAGCAAAAGGTCAACCGCGAG GCGGAGACTCTGAGATGACGATAGGGATGACGATAGAGTTAGATTCGAAA CGAGCGCCGTTTTTTTTGTCGTGTACAGCATGATAGTTAGCCTGTGACCA CGGGAATTGGCCGTGTCTAGT
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Coding sequence (CDS) from alignment at C-linearis_contig112:408259..409979-

>mRNA_C-linearis_contig112.1548.1 ID=mRNA_C-linearis_contig112.1548.1|Name=mRNA_C-linearis_contig112.1548.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1398bp|location=Sequence derived from alignment at C-linearis_contig112:408259..409979- (Chordaria linearis ClinC8C monoicous)
ATGGCGCTAGCAACAACCCGGCGAGACGGCCGGAAAGCCAACCAGATACG
GCCTCTAGCCGCCGAGCAAGGCATCCTCAACAGAGCGGACGGCTCCGCCC
GCTTCGTGCAGGGCAACACTTCCGTCCTCGCGGCCGTCTACGGGCCGGCC
CCGGCCAAGTCGGCGAGGTCGGAGAGGGCCGACGGGGCGACGGTGGACGT
GAACTTCAAGCCTGAGAGCGGGATAACTACGCCCGCCGACGCGGAGAGGG
AGGCGCTGCTGAGGAGGTCGCTTGAGGAGGTGGTCTTGCGGTCGAGATAT
CCCAGGGCCGTGGTGTCTGTCGTCATTCAGATGGCGCTAGCAACAACCCG
GCGAGACGGCCGGAAAGCCAACCAGATACGGCCTCTAGCCGCCGAGCAAG
GCATCCTCAACAGAGCGGACGGCTCCGCCCGCTTCGTGCAGGGCAACACT
TCCGTCCTCGCGGCCGTCTACGGGCCGGCCCCGGCCAAGTCGGCGAGGTC
GGAGAGGGCCGACGGGGCGACGGTGGACGTGAACTTCAAGCCTGAGAGCG
GGATAACTACGCCCGCCGACGCGGAGAGGGAGGCGCTGCTGAGGAGGTCG
CTTGAGGAGGTGGTCTTGCGGTCGAGATATCCCAGGGCCGTGGTGTCTGT
CGTCATTCAGGTGATCGTGGACGACGGCTCGGTCCTGAGCGCCGCCCTCA
ACGCCGCCACCATGGCCCTCCTCAACGCGGGCGTCGAGATGACCGGCATG
GCCCTCTCCGTAACCTGCTGCATCACCTCGTCCCTCGCCGGGAGGTCCGT
CCTCCTGGACCCCTGCAAGTCGGAGGAGGGCGAGGCCGCCGCCACCGCCG
ACGTCGCCACCCTGTCGGTCGGCGGCGGGGTGCTGTCGTGCCGGGCTGTC
GGGCTGATGAGCCGGGAGGAGTACTTCGCGTGCTGCGAGGCGGCGGCGCA
GGGCACGACGGCCGTCCGGTCGTTTGTGAGGCTGTCCGCGGAGCAAAAGG
TCAACCGCGAGGCGGAGACTCTGAGATGAGTGATCGTGGACGACGGCTCG
GTCCTGAGCGCCGCCCTCAACGCCGCCACCATGGCCCTCCTCAACGCGGG
CGTCGAGATGACCGGCATGGCCCTCTCCGTAACCTGCTGCATCACCTCGT
CCCTCGCCGGGAGGTCCGTCCTCCTGGACCCCTGCAAGTCGGAGGAGGGC
GAGGCCGCCGCCACCGCCGACGTCGCCACCCTGTCGGTCGGCGGCGGGGT
GCTGTCGTGCCGGGCTGTCGGGCTGATGAGCCGGGAGGAGTACTTCGCGT
GCTGCGAGGCGGCGGCGCAGGGCACGACGGCCGTCCGGTCGTTTGTGAGG
CTGTCCGCGGAGCAAAAGGTCAACCGCGAGGCGGAGACTCTGAGATGA
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