mRNA_C-linearis_contig112.1548.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig112.1548.1 vs. uniprot
Match: D7FVT2_ECTSI (RNase_PH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVT2_ECTSI) HSP 1 Score: 367 bits (942), Expect = 9.770e-126 Identity = 199/227 (87.67%), Postives = 216/227 (95.15%), Query Frame = 1
Query: 130 TRRDGRKANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSARSERADGATVDVNFKPESGITTPADAEREALLRRSLEEVVLRSRYPRAVVSVVIQVIVDDGSVLSAALNAATMALLNAGVEMTGMALSVTCCITSSLAGRSVLLDPCKSEEGEAAATADVATLSVGGGVLSCRAVGLMSREEYFACCEAAAQGTTAVRSFVRLSAEQKVNREAETLR 810
TRRDGR+ANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKS R ER++GAT+DV+FKPESGIT+ ADAE EALLRRSLEEVVLRSRYPR VVSV+IQVIVDDG+VLSAALNAATMALLNAGVEMTGMALSVTCCIT++++GRSVLLDPCK+EE +AAATA VATLS GGGVLSC AVG MS+EEYFACCEAA+ GTTAVRSFVRLSAEQKVNREAET+R
Sbjct: 4 TRRDGRRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSLRMERSEGATLDVSFKPESGITSSADAESEALLRRSLEEVVLRSRYPRTVVSVIIQVIVDDGAVLSAALNAATMALLNAGVEMTGMALSVTCCITATVSGRSVLLDPCKAEEIDAAATAVVATLSAGGGVLSCHAVGSMSQEEYFACCEAASLGTTAVRSFVRLSAEQKVNREAETVR 230
BLAST of mRNA_C-linearis_contig112.1548.1 vs. uniprot
Match: A0A835ZF16_9STRA (Ribosomal protein S5 domain 2-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF16_9STRA) HSP 1 Score: 187 bits (476), Expect = 5.820e-55 Identity = 114/238 (47.90%), Postives = 149/238 (62.61%), Query Frame = 1
Query: 133 RRDGRKANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSARSERADGATVDVNFKPESGITTPADAEREALLRRSLEEVVLRSRYPRAVVSVVIQVIVDDGSVLSAALNAATMALLNAGVEMTGMALSVTCCITSS-------------LAGRSVLLDPCKSEEGEAAATADVATLSVGGGVLSCRAVGLMSREEYFACCEAAAQGTTAVRSFVRLSAEQKVNREAETL 807
R DGR +QIR L A+QGILNRADGS RF GNTSVL AVYGPA + E+ D A ++V+++ + G T ADAERE +RR+LEE V +RYPR+V+SVV+QV+ DDGSVLSAA+NA MAL++AGVEM GM ++ T C + S L + LDP SEE AT +A L+ G+L+ + G + EE FA EAA + AV ++R + E KV R+ L
Sbjct: 6 RFDGRTGDQIRGLFADQGILNRADGSVRFGAGNTSVLVAVYGPAQPAQQKKEKPDRAIIEVSWRADKGAQTSADAERELYVRRTLEEAVAVARYPRSVISVVVQVLCDDGSVLSAAINACAMALVDAGVEMIGMPVAATACFSGSGSAAAAAPEQLQHLGESHLQLDPSASEEATTRATVMLAVLAGSDGILTMKMTGQLGAEELFAASEAARKACDAVSVYLRRAVEAKVLRDVANL 243
BLAST of mRNA_C-linearis_contig112.1548.1 vs. uniprot
Match: A0A067CJ13_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CJ13_SAPPC) HSP 1 Score: 182 bits (463), Expect = 2.840e-53 Identity = 104/220 (47.27%), Postives = 142/220 (64.55%), Query Frame = 1
Query: 133 RRDGRKANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSARSERADGATVDVNFKPESGITTPADAEREALLRRSLEEVVLRSRYPRAVVSVVIQVIVDDGSVLSAALNAATMALLNAGVEMTGMALSVTCCITSSLAGRSVLLDPCKSEEGEAAATADVATLSVGGGVLSCRAVGLMSREEYFACCEAAAQGTTAVRSFVRLSAEQKVNR 792
R DGR +IRPLA EQG+LNRADGSARF G TSVLA+V GPA AK R E+A GAT++V FK E G + D E E +LR + E +++ +PRAVVS+ +QV+ DDG++L+ A+NA +AL++AGV M + ++TC I L + LDP +SE AAAT A G+L+ G++S E+YFAC E + +V +FVR+S E K N+
Sbjct: 7 REDGRLVQEIRPLACEQGLLNRADGSARFNHGTTSVLASVSGPAAAKLRRQEKATGATLEVTFKAEKGAPSARDKEYEMILRETFEPIIVLENFPRAVVSITVQVVEDDGALLAVAINAVNLALIDAGVPMRSIVGAITCSI---LEDGQLCLDPSRSEGETAAATVTTACCGNNDGILTSMTSGVLSEEQYFACSEICRRAIDSVLAFVRISQESKFNK 223
BLAST of mRNA_C-linearis_contig112.1548.1 vs. uniprot
Match: A0A485KL27_9STRA (Aste57867_8748 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KL27_9STRA) HSP 1 Score: 179 bits (455), Expect = 4.940e-52 Identity = 105/223 (47.09%), Postives = 140/223 (62.78%), Query Frame = 1
Query: 133 RRDGRKANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSARSERADGATVDVNFKPESGITTPADAEREALLRRSLEEVVLRSRYPRAVVSVVIQVIVDDGSVLSAALNAATMALLNAGVEMTGMALSVTCCITSSLAGRSVLLDPCKSEEGEAAATADVATLSVGGGVLSCRAVGLMSREEYFACCEAAAQGTTAVRSFVRLSAEQKVNREAE 801
R DGR +IRPL+ EQG+LNRADGSARF G TSVLA+V GPA AK R E+ D AT++V FK E G T D E EA+LR++ E +V YPRAV+S+ +QV+ DDGS+L+ A+NA +ALL+AG+ M + ++TC I L + LDP + E AAAT A G+L+ G++S +YFAC E + +V SFVR+S E K + E
Sbjct: 8 RGDGRLVQEIRPLSCEQGLLNRADGSARFSHGTTSVLASVNGPAAAKIRRQEKVDEATLEVVFKAEKGAPTARDKEYEAILRQTFEPIVYLENYPRAVISITVQVVEDDGSLLAVAINAVNLALLDAGIPMRCLVGAITCSI---LEDGQLCLDPARVEGETAAATVTSACAGNNDGILTSLTTGMLSESQYFACSEICRRAVDSVLSFVRISQETKFQKALE 227
BLAST of mRNA_C-linearis_contig112.1548.1 vs. uniprot
Match: A0A1V9ZII6_9STRA (Exosome component Rrp46 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZII6_9STRA) HSP 1 Score: 177 bits (450), Expect = 2.610e-51 Identity = 103/220 (46.82%), Postives = 142/220 (64.55%), Query Frame = 1
Query: 133 RRDGRKANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSARSERADGATVDVNFKPESGITTPADAEREALLRRSLEEVVLRSRYPRAVVSVVIQVIVDDGSVLSAALNAATMALLNAGVEMTGMALSVTCCITSSLAGRSVLLDPCKSEEGEAAATADVATLSVGGGVLSCRAVGLMSREEYFACCEAAAQGTTAVRSFVRLSAEQKVNR 792
R DGR +IRPLA EQG+LNRADGS+RF G TSVLA+V GPA AK R E+ AT++V FKPE G + D E E +LR++ E ++L +PRAV+SV +QV+ DDG++L+ A+NA +ALL+AGV M G+ ++TC I L + LDP SE AAAT A+ GVL+ G+++ +YFAC E +G +V +FVR++ E K +
Sbjct: 8 REDGRLVQEIRPLACEQGLLNRADGSSRFNHGTTSVLASVSGPAAAKLRRQEKMHCATLEVVFKPEKGAASARDKEYEMILRQTFEPIILLENFPRAVISVTVQVVEDDGALLAVAINAVNLALLDAGVPMRGIVGAITCTI---LEDGQLCLDPSLSEGEAAAATVTTASCGNSDGVLTSMTSGVLTEAQYFACSEICRRGIDSVLAFVRIAQETKFQK 224
BLAST of mRNA_C-linearis_contig112.1548.1 vs. uniprot
Match: A0A024TBK6_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024TBK6_9STRA) HSP 1 Score: 171 bits (432), Expect = 1.470e-48 Identity = 99/222 (44.59%), Postives = 139/222 (62.61%), Query Frame = 1
Query: 133 RRDGRKANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSARSERADGATVDVNFKPESGITTPADAEREALLRRSLEEVVLRSRYPRAVVSVVIQVIVDDGSVLSAALNAATMALLNAGVEMTGMALSVTCCITSSLAGRSVLLDPCKSEEGEAAATADVATLSVGGGVLSCRAVGLMSREEYFACCEAAAQGTTAVRSFVRLSAEQKVNREA 798
R DGR +IRPL+ EQG+LNRADGSARF G+TSVLA+V GPA AK R E+ D ATV+V FK + G T D E EA+L+++ + +V YPRAV+S+ +QV+ DDGS+L+ A+NA +ALL+AG+ M + ++TC I L + LDP +E A A+ A G+L+ GL++ +YFA E + +V SFVR++ E K + A
Sbjct: 10 RDDGRLVQEIRPLSCEQGLLNRADGSARFCHGSTSVLASVNGPAAAKIRRHEKVDAATVEVVFKSDKGAPTARDKEYEAILKQTFDPIVYVENYPRAVISITVQVVEDDGSLLAVAINAVNLALLDAGIPMRSLVGAITCSI---LDDGQLCLDPSLTEGDAATASVTAAYAGKNDGILTSITTGLVNESQYFAASEICRRAIDSVLSFVRIAQESKFQKNA 228
BLAST of mRNA_C-linearis_contig112.1548.1 vs. uniprot
Match: A0A833WKX0_PHYIN (3' exoribonuclease family domain 2 n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WKX0_PHYIN) HSP 1 Score: 166 bits (421), Expect = 1.230e-46 Identity = 102/238 (42.86%), Postives = 149/238 (62.61%), Query Frame = 1
Query: 103 LSPRMALATT---RRDGRKANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSARSERADGATVDVNFKPESGITTPADAEREALLRRSLEEVVLRSRYPRAVVSVVIQVIVDDGSV--------LSAALNAATMALLNAGVEMTGMALSVTCCITSSLAGRSVLLDPCKSEEGEAAATADVATLSVGGGVLSCRAVGLMSREEYFACCEAAAQGTTAVRSFVRLSAEQK 783
L+ R A+ T R+DGR N++RP A+EQG L RADGSAR G+++VLAAVYGP A++ R+E D AT+DV FK E GI T + E E ++R++ VVL +PRAV+S+V+QVI D+GS+ + A+NA ++AL++AGV M + + +C I ++ LDP +EE EA + A S GVL+C GL+S E+YFAC EA + + +V +F R+ ++K
Sbjct: 9 LNNRQAMVATNLQRQDGRAGNELRPFASEQGALFRADGSARMSHGSSTVLAAVYGPGQARNWRAENTDKATLDVCFKLEKGIMTSKEKEYEQIIRQTFAPVVLTDSFPRAVISIVVQVIEDNGSISFPLFLIIAALAINAVSLALMDAGVPMLSVVTATSCSIFDD---GNLYLDPTAAEEEEAVSWVTTARSSTSDGVLTCITNGLLSEEQYFACSEACQRASESVAAFFRIVQQKK 243
BLAST of mRNA_C-linearis_contig112.1548.1 vs. uniprot
Match: A0A6G0WBP6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WBP6_9STRA) HSP 1 Score: 163 bits (413), Expect = 9.890e-46 Identity = 99/219 (45.21%), Postives = 133/219 (60.73%), Query Frame = 1
Query: 127 TTRRDGRKANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSARSERADGATVDVNFKPESGITTPADAEREALLRRSLEEVVLRSRYPRAVVSVVIQVIVDDGSVLSAALNAATMALLNAGVEMTGMALSVTCCITSSLAGRSVLLDPCKSEEGEAAATADVATLSVGGGVLSCRAVGLMSREEYFACCEAAAQGTTAVRSFVRLSAEQK 783
T R DGR +IRPL+ EQ +LNRADGSARF G +SVLA+V GPA AK R E+ A+++V FK E G T D E EA+LR++ E ++ +PRAV+SV +QV+ DDGS+LS A+NA +ALL+AG+ M + +VTC I L LD +E A A+ A G+L+ G++S YFAC E + +V SFVR+S E K
Sbjct: 7 TRREDGRLVQEIRPLSCEQSLLNRADGSARFSHGTSSVLASVNGPAAAKIRRQEKVSCASLEVTFKAEKGAPTARDKEYEAILRQTFEPIIYLENFPRAVISVTVQVVEDDGSLLSVAINAMNLALLDAGIPMRCLVGAVTCSI---LDDGQFCLDSSLTEGEAAVASVTSACAGNNDGILTSLTTGVLSESHYFACSEICRRAVGSVLSFVRISQETK 222
BLAST of mRNA_C-linearis_contig112.1548.1 vs. uniprot
Match: A0A1V9ZVY3_9STRA (U4/U6 small nuclear ribonucleoprotein Prp4 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZVY3_9STRA) HSP 1 Score: 171 bits (434), Expect = 7.910e-45 Identity = 96/219 (43.84%), Postives = 138/219 (63.01%), Query Frame = 1
Query: 133 RRDGRKANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSARSERADGATVDVNFKPESGITTPADAEREALLRRSLEEVVLRSRYPRAVVSVVIQVIVDDGSVLSAALNAATMALLNAGVEMTGMALSVTCCITSSLAGRSVLLDPCKSEEGEAAATADVATLSVGGGVLSCRAVGLMSREEYFACCEAAAQGTTAVRSFVRLSAEQKVN 789
R DGR +IRPLA EQG+LNRADGSARF G TSV+A+V GPAPAK R E + AT+DV FK E G+ T D E E +LR++ E ++L +PR V+S+ +QV+ DDGS+L+ ++NA +AL++AG+ M + ++TC S L + +DP E A AT A + +L+ G+++ E+YFAC E + +V +FVR+S E K +
Sbjct: 504 REDGRSVQEIRPLACEQGLLNRADGSARFNHGTTSVMASVSGPAPAKIRRQENVNQATLDVVFKAEKGVATARDKEYELILRQTFEPIILLENFPRTVISITVQVVEDDGSLLAVSINAINLALMDAGIPMRSVVGAITC---SVLEDSQLCIDPSLVENDTATATVTTACSANNHQILTSFTSGILTEEQYFACSEICRRAIDSVIAFVRISQESKFH 719
BLAST of mRNA_C-linearis_contig112.1548.1 vs. uniprot
Match: A0A5D6XHQ5_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XHQ5_9STRA) HSP 1 Score: 160 bits (406), Expect = 8.450e-45 Identity = 97/226 (42.92%), Postives = 140/226 (61.95%), Query Frame = 1
Query: 121 LATTRRDGRKANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSARSERADGATVDVNFKPESGITTPADAEREALLRRSLEEVVLRSRYPRAVVSVVIQVIVDDGSVLSAALNAATMALLNAGVEMTGMALSVTCCITSSLAGRSVLLDPCKSEEGEAAATADVATLSVGGGVLSCRAVGLMSREEYFACCEAAAQGTTAVRSFVRLSAEQKVNREA 798
+AT R DGR N++RPLA+EQG L RADGSAR G+++VL AVYGP AKS RSE+ A +DV FK E G+ T + E E ++R++ E VV+ +PRAV+S+V+Q +LS A+NA ++ALL+AGV MT + S TC + L ++ LDP ++EE + + A S VL+ GL++ E+YFAC EA + +V +F R+ ++K A
Sbjct: 1 MATKRHDGRAGNELRPLASEQGALFRADGSARVAHGSSAVLVAVYGPGQAKSRRSEKLHRAALDVCFKLEKGVLTSKEKEYEQVIRQTFEPVVVTENFPRAVISIVVQ------HLLSVAINAVSLALLDAGVPMTSVVTSATCGL---LPDGTLFLDPSQAEEELSTSLVTTACSSTSDSVLTSLTNGLLTEEQYFACSEACRRAAESVHAFFRIVQQKKYEANA 217 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig112.1548.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig112.1548.1 >prot_C-linearis_contig112.1548.1 ID=prot_C-linearis_contig112.1548.1|Name=mRNA_C-linearis_contig112.1548.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=233bp MALATTRRDGRKANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAback to top mRNA from alignment at C-linearis_contig112:408259..409979- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig112.1548.1 ID=mRNA_C-linearis_contig112.1548.1|Name=mRNA_C-linearis_contig112.1548.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1721bp|location=Sequence derived from alignment at C-linearis_contig112:408259..409979- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig112:408259..409979- >mRNA_C-linearis_contig112.1548.1 ID=mRNA_C-linearis_contig112.1548.1|Name=mRNA_C-linearis_contig112.1548.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1398bp|location=Sequence derived from alignment at C-linearis_contig112:408259..409979- (Chordaria linearis ClinC8C monoicous)back to top |