prot_C-linearis_contig112.1545.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig112.1545.1
Unique Nameprot_C-linearis_contig112.1545.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length156
Homology
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BLAST of mRNA_C-linearis_contig112.1545.1 vs. uniprot
Match: D7FVS7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVS7_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 4.230e-35
Identity = 81/159 (50.94%), Postives = 97/159 (61.01%), Query Frame = 0 
Query:    7 QNRETRRRRP--RPWASSRTTAVLLTLVLGGCQGFALTSKPHHANHAAVSSKLQRPGLDNPTALNHHHKTSTCVPL--RSRRRPHR----TRVGGQRDGG-YGRFSDTDDEPSFRPSPSPSVAGAGVGRPGREWQEIGNADVLVPKDVEYPLGVVHFVG 156
            Q    R+RRP  +PWAS  +  VLL L+LG CQGFA +SK HH              LD+P A N +H+     P+  RSRRR       T  G  RD G YGRFSDT DEP++RP+     A  G  R GR+W+EIGNADVLVP+DV+YPLGVVHFVG
Sbjct:    3 QQHRRRQRRPVQQPWASGTSAIVLLALLLGRCQGFAFSSKAHHTR------------LDSPAAHNSNHRRDVAAPVLQRSRRRRRHPASPTIAGAHRDSGDYGRFSDTGDEPAYRPA----TAAGGASRSGRDWEEIGNADVLVPRDVDYPLGVVHFVG 145
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig112.1545.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVS7_ECTSI4.230e-3550.94Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 34..38
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..38
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 25..33
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 39..156
NoneNo IPR availableTMHMMTMhelixcoord: 19..41

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig112contigC-linearis_contig112:387665..388838 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig112.1545.1mRNA_C-linearis_contig112.1545.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig112 387491..388838 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig112.1545.1 ID=prot_C-linearis_contig112.1545.1|Name=mRNA_C-linearis_contig112.1545.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=156bp
MASQQVQNRETRRRRPRPWASSRTTAVLLTLVLGGCQGFALTSKPHHANH
AAVSSKLQRPGLDNPTALNHHHKTSTCVPLRSRRRPHRTRVGGQRDGGYG
RFSDTDDEPSFRPSPSPSVAGAGVGRPGREWQEIGNADVLVPKDVEYPLG
VVHFVG
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