mRNA_C-linearis_contig112.1545.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig112.1545.1
Unique NamemRNA_C-linearis_contig112.1545.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig112.1545.1 vs. uniprot
Match: D7FVS7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVS7_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 2.220e-34
Identity = 81/159 (50.94%), Postives = 97/159 (61.01%), Query Frame = 1 
Query:  193 QNRETRRRRP--RPWASSRTTAVLLTLVLGGCQGFALTSKPHHANHAAVSSKLQRPGLDNPTALNHHHKTSTCVPL--RSRRRPHR----TRVGGQRDGG-YGRFSDTDDEPSFRPSPSPSVAGAGVGRPGREWQEIGNADVLVPKDVEYPLGVVHFVG 642
            Q    R+RRP  +PWAS  +  VLL L+LG CQGFA +SK HH              LD+P A N +H+     P+  RSRRR       T  G  RD G YGRFSDT DEP++RP+     A  G  R GR+W+EIGNADVLVP+DV+YPLGVVHFVG
Sbjct:    3 QQHRRRQRRPVQQPWASGTSAIVLLALLLGRCQGFAFSSKAHHTR------------LDSPAAHNSNHRRDVAAPVLQRSRRRRRHPASPTIAGAHRDSGDYGRFSDTGDEPAYRPA----TAAGGASRSGRDWEEIGNADVLVPRDVDYPLGVVHFVG 145
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig112.1545.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVS7_ECTSI2.220e-3450.94Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig112contigC-linearis_contig112:387491..388838 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score140.6
Seed ortholog evalue6.3e-31
Seed eggNOG ortholog2880.D7FVS7
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Protein of unknown function (DUF1350)
EggNOG OGs2QSXN@2759,COG1084@1
Ec32 ortholog descriptionProtein of unknown function DUF1350
Ec32 orthologEc-01_001990.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size644
Cds size468
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig112.1545.1prot_C-linearis_contig112.1545.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig112 387665..388838 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927494.2951853-UTR-C-linearis_contig112:387490..3876641622927494.2951853-UTR-C-linearis_contig112:387490..387664Chordaria linearis ClinC8C monoicousUTRC-linearis_contig112 387491..387664 +
1690879731.38509-UTR-C-linearis_contig112:387490..3876641690879731.38509-UTR-C-linearis_contig112:387490..387664Chordaria linearis ClinC8C monoicousUTRC-linearis_contig112 387491..387664 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927494.3090925-CDS-C-linearis_contig112:387664..3877761622927494.3090925-CDS-C-linearis_contig112:387664..387776Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 387665..387776 +
1690879731.3965828-CDS-C-linearis_contig112:387664..3877761690879731.3965828-CDS-C-linearis_contig112:387664..387776Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 387665..387776 +
1622927494.3214173-CDS-C-linearis_contig112:388482..3888381622927494.3214173-CDS-C-linearis_contig112:388482..388838Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 388483..388838 +
1690879731.4123003-CDS-C-linearis_contig112:388482..3888381690879731.4123003-CDS-C-linearis_contig112:388482..388838Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 388483..388838 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig112.1545.1

>prot_C-linearis_contig112.1545.1 ID=prot_C-linearis_contig112.1545.1|Name=mRNA_C-linearis_contig112.1545.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=156bp
MASQQVQNRETRRRRPRPWASSRTTAVLLTLVLGGCQGFALTSKPHHANH
AAVSSKLQRPGLDNPTALNHHHKTSTCVPLRSRRRPHRTRVGGQRDGGYG
RFSDTDDEPSFRPSPSPSVAGAGVGRPGREWQEIGNADVLVPKDVEYPLG
VVHFVG
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mRNA from alignment at C-linearis_contig112:387491..388838+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig112.1545.1 ID=mRNA_C-linearis_contig112.1545.1|Name=mRNA_C-linearis_contig112.1545.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1348bp|location=Sequence derived from alignment at C-linearis_contig112:387491..388838+ (Chordaria linearis ClinC8C monoicous)
CCTCTTGCTCCCTGCCTTACTTCTCTGCTCTCCACCGAGAGGAAGAGAGC
GGCCCCCTTGCACTGATTCTTCTCTACACACATAGAGAAGTGGTGGCCTC
CACTTTACAATCGTCCTTTTCCCGCTGTCCTCTGTAGTGGCCTCCAGTTT
ACAATCGACTTCGCTGTCTCCTCTATGGCTTCGCAGCAAGTGCAGAATCG
TGAGACTCGCAGACGCCGACCACGTCCGTGGGCGTCGAGTAGAACCACAG
CTGTCTTGCTGACTCTCGTCCTCGGCGGATGTCAAGGTGCGGCTTCCGTT
GGGTATTCATCACGCGAACTGCTGTGTGTGCTCTTGTGTCCGTCTGTCTG
CTGTGATGAATGCGGTGCTGCGCTCTCTCACCGACACGTATGTATGTAGC
AGGCCATATGGTGGCAGTTGGTTGTAGCTCCCCGAGGTGCAATGCACACC
CCGCGTGGCTACCAGGTTACATAGCAGTTGCAAGAAAACTGGGTGCCATA
AAAGCACTCCATGCTTGACCGTGTGGTGGTTGAGGCCCGCCGCTCTCCGC
TCGCAGAGGTTTGAATTCAAATCGTTCACATCACGAGTGCAATATGACGG
CCATGCCAGGTGGTCTCTCCACGTAGCACCGCCACGTTCTCGTAGTTGCT
CGCGTCCCTCTAGCTGTTGCTGGGCACTACTGCTCTAGTCTGGAGCGAGT
TACACGCATAAATTACTCGCTGTATCGATCTCATTGCTATGCGACGACTG
GAAGTTGGACTCATTTTAGAGAGACCTTCCACCTCGACGCTAGACGACGA
CAGCAGTACGAATGACCACCGCGGTACATAAATCTGCACAGCAGTTGGCA
CACACCAAGCGCCATGGATGTGCGGCTCCTATATCGCGTGTGTTTGCGCA
CCCCGTCCCGGGCGACCACAAAACGCACTCCGATACCTCAACCCCCCGCT
TGCCCCGTTGATGTCCAAAACCCTCCCACCGCCGTTTATCAGGGTTCGCG
CTCACCAGCAAGCCCCACCACGCCAACCACGCTGCTGTCAGCAGCAAGCT
CCAACGCCCCGGCCTTGACAACCCTACCGCACTCAACCACCACCATAAAA
CTTCCACCTGCGTCCCGCTGCGCTCGCGTCGACGGCCGCACCGCACGAGG
GTCGGCGGCCAACGCGACGGCGGTTACGGAAGGTTCAGCGATACCGACGA
CGAGCCGAGCTTCCGGCCGTCTCCATCCCCATCGGTGGCGGGGGCAGGGG
TGGGGAGGCCCGGTCGGGAGTGGCAGGAGATCGGCAACGCGGACGTGCTG
GTGCCGAAGGACGTGGAGTATCCCCTGGGGGTGGTGCACTTCGTCGGG
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Coding sequence (CDS) from alignment at C-linearis_contig112:387491..388838+

>mRNA_C-linearis_contig112.1545.1 ID=mRNA_C-linearis_contig112.1545.1|Name=mRNA_C-linearis_contig112.1545.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=936bp|location=Sequence derived from alignment at C-linearis_contig112:387491..388838+ (Chordaria linearis ClinC8C monoicous)
ATGGCTTCGCAGCAAGTGCAGAATCGTGAGACTCGCAGACGCCGACCACG
TCCGTGGGCGTCGAGTAGAACCACAGCTGTCTTGCTGACTCTCGTCCTCG
GCGGATGTCAAGATGGCTTCGCAGCAAGTGCAGAATCGTGAGACTCGCAG
ACGCCGACCACGTCCGTGGGCGTCGAGTAGAACCACAGCTGTCTTGCTGA
CTCTCGTCCTCGGCGGATGTCAAGGGTTCGCGCTCACCAGCAAGCCCCAC
CACGCCAACCACGCTGCTGTCAGCAGCAAGCTCCAACGCCCCGGCCTTGA
CAACCCTACCGCACTCAACCACCACCATAAAACTTCCACCTGCGTCCCGC
TGCGCTCGCGTCGACGGCCGCACCGCACGAGGGTCGGCGGCCAACGCGAC
GGCGGTTACGGAAGGTTCAGCGATACCGACGACGAGCCGAGCTTCCGGCC
GTCTCCATCCCCATCGGTGGCGGGGGCAGGGGTGGGGAGGCCCGGTCGGG
AGTGGCAGGAGATCGGCAACGCGGACGTGCTGGTGCCGAAGGACGTGGAG
TATCCCCTGGGGGTGGTGCACTTCGTCGGGGGTTCGCGCTCACCAGCAAG
CCCCACCACGCCAACCACGCTGCTGTCAGCAGCAAGCTCCAACGCCCCGG
CCTTGACAACCCTACCGCACTCAACCACCACCATAAAACTTCCACCTGCG
TCCCGCTGCGCTCGCGTCGACGGCCGCACCGCACGAGGGTCGGCGGCCAA
CGCGACGGCGGTTACGGAAGGTTCAGCGATACCGACGACGAGCCGAGCTT
CCGGCCGTCTCCATCCCCATCGGTGGCGGGGGCAGGGGTGGGGAGGCCCG
GTCGGGAGTGGCAGGAGATCGGCAACGCGGACGTGCTGGTGCCGAAGGAC
GTGGAGTATCCCCTGGGGGTGGTGCACTTCGTCGGG
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