prot_C-linearis_contig112.1532.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_C-linearis_contig112.1532.1
Unique Name	prot_C-linearis_contig112.1532.1
Type	polypeptide
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length	162

Homology

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BLAST of mRNA_C-linearis_contig112.1532.1 vs. uniprot
Match: A0A6H5KV55_9PHAE (H/ACA ribonucleoprotein complex subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV55_9PHAE)

HSP 1 Score: 184 bits (468), Expect = 6.840e-57
Identity = 88/89 (98.88%), Postives = 89/89 (100.00%), Query Frame = 0

Query:   12 ELGEFMHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKVGKVDEILGPVNGVMFTVKPDTGVNATSFKNGDKIFIGTQKLLPVSRFTGEGS 100
            ELGEFMHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKVGKVDEILGPVNGVMFTVKPDTGVNA+SFKNGDKIFIGTQKLLPVSRFTGEGS
Sbjct:   38 ELGEFMHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKVGKVDEILGPVNGVMFTVKPDTGVNASSFKNGDKIFIGTQKLLPVSRFTGEGS 126

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BLAST of mRNA_C-linearis_contig112.1532.1 vs. uniprot
Match: A0A7S3USE8_HETAK (H/ACA ribonucleoprotein complex subunit (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USE8_HETAK)

HSP 1 Score: 161 bits (407), Expect = 2.170e-48
Identity = 75/92 (81.52%), Postives = 82/92 (89.13%), Query Frame = 0

Query:   12 ELGEFMHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKVGKVDEILGPVNGVMFTVKPDTGVNATSFKNGDKIFIGTQKLLPVSRFTGEGSGGG 103
            ELG+FMHPCE EMVYKLTN MVPYFNAGAYL+NKTK+GKVDEI GPVN +MFTVKPDTGV ATSFK GDK++IGT KLLP+SRFTG G  GG
Sbjct:   23 ELGDFMHPCEGEMVYKLTNEMVPYFNAGAYLENKTKIGKVDEIFGPVNEIMFTVKPDTGVIATSFKKGDKVWIGTDKLLPMSRFTGGGXXGG 114

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BLAST of mRNA_C-linearis_contig112.1532.1 vs. uniprot
Match: A0A835YSJ1_9STRA (H/ACA ribonucleoprotein complex subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSJ1_9STRA)

HSP 1 Score: 153 bits (386), Expect = 5.550e-45
Identity = 71/86 (82.56%), Postives = 78/86 (90.70%), Query Frame = 0

Query:   12 ELGEFMHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKVGKVDEILGPVNGVMFTVKPDTGVNATSFKNGDKIFIGTQKLLPVSRFTG 97
            ELG F+H CE EMVYKLTNSMVPYFNAGAYL+NKTK+GKVDEILGP+NG  FTVKPD GVNATSFK+GDK+FIG  KLLP+SRFTG
Sbjct:   43 ELGIFVHACEGEMVYKLTNSMVPYFNAGAYLENKTKIGKVDEILGPINGSYFTVKPDGGVNATSFKDGDKVFIGPDKLLPMSRFTG 128

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BLAST of mRNA_C-linearis_contig112.1532.1 vs. uniprot
Match: D8LD14_ECTSI (H/ACA ribonucleoprotein complex subunit (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD14_ECTSI)

HSP 1 Score: 147 bits (371), Expect = 6.420e-43
Identity = 69/72 (95.83%), Postives = 71/72 (98.61%), Query Frame = 0

Query:   11 AELGEFMHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKVGKVDEILGPVNGVMFTVKPDTGVNATSFKNGDKI 82
            +ELGEFMHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKVGKVDEILGPVNGVMFTVKPDTGVNA+SFKN DKI
Sbjct:   43 SELGEFMHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKVGKVDEILGPVNGVMFTVKPDTGVNASSFKNNDKI 114

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BLAST of mRNA_C-linearis_contig112.1532.1 vs. uniprot
Match: A0A7S2UZ93_9STRA (H/ACA ribonucleoprotein complex subunit (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZ93_9STRA)

HSP 1 Score: 148 bits (373), Expect = 1.310e-42
Identity = 67/93 (72.04%), Postives = 80/93 (86.02%), Query Frame = 0

Query:   12 ELGEFMHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKVGKVDEILGPVNGVMFTVKPDTGVNATSFKNGDKIFIGTQKLLPVSRFTGEGSGGGG 104
            ELG FMHPCE EMVYKL ++MVPYFNAGA+L +KTK+GKVDEI GP+N +MFTVKPD GV+A SFK  DK+F+ T+KLLP+SRFTGEG+  GG
Sbjct:   49 ELGSFMHPCEGEMVYKLVHTMVPYFNAGAFLQDKTKLGKVDEIFGPINNIMFTVKPDAGVSAASFKAEDKVFVSTEKLLPMSRFTGEGAKRGG 141

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BLAST of mRNA_C-linearis_contig112.1532.1 vs. uniprot
Match: A0A6A4XZY0_9STRA (H/ACA ribonucleoprotein complex subunit (Fragment) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4XZY0_9STRA)

HSP 1 Score: 145 bits (366), Expect = 1.560e-41
Identity = 67/95 (70.53%), Postives = 78/95 (82.11%), Query Frame = 0

Query:   12 ELGEFMHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKVGKVDEILGPVNGVMFTVKPDTGVNATSFKNGDKIFIGTQKLLPVSRFTGEGSGGGGGR 106
            ELG FMH CEDEMVYK T+  VPYFNAG YL+NKTK+GK+DEILG +N VMFTVKPD+GV A SFK+GDK++I   KLLP+SRFT +G   GGGR
Sbjct:   50 ELGTFMHACEDEMVYKSTSDKVPYFNAGVYLENKTKIGKLDEILGAINDVMFTVKPDSGVAAKSFKSGDKVYISPDKLLPLSRFTDQGKSSGGGR 144

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BLAST of mRNA_C-linearis_contig112.1532.1 vs. uniprot
Match: A0A024U6J9_9STRA (H/ACA ribonucleoprotein complex subunit n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024U6J9_9STRA)

HSP 1 Score: 144 bits (363), Expect = 8.280e-41
Identity = 67/95 (70.53%), Postives = 77/95 (81.05%), Query Frame = 0

Query:   12 ELGEFMHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKVGKVDEILGPVNGVMFTVKPDTGVNATSFKNGDKIFIGTQKLLPVSRFTGEGSGGGGGR 106
            ELG F+H CEDEMVYK T+  VPYFNAGA+L+NKTK+GKVDEILG +N VMFTVKPD GV A SFK GDK++I   KLLP+SRFT +G   GGGR
Sbjct:   48 ELGVFLHACEDEMVYKSTSDKVPYFNAGAFLENKTKIGKVDEILGAINDVMFTVKPDAGVTAKSFKAGDKVYISPDKLLPLSRFTDQGKSSGGGR 142

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BLAST of mRNA_C-linearis_contig112.1532.1 vs. uniprot
Match: A0A7S3HT16_9STRA (H/ACA ribonucleoprotein complex subunit n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HT16_9STRA)

HSP 1 Score: 144 bits (362), Expect = 2.790e-40
Identity = 67/100 (67.00%), Postives = 81/100 (81.00%), Query Frame = 0

Query:    9 PPAEL---GEFMHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKVGKVDEILGPVNGVMFTVKPDTGVNATSFKNGDKIFIGTQKLLPVSRFTGEGSGGGGG 105
            PPAEL   G FMH  E E+V +LTN+MVPYFNAG Y++NK K+GKV+E+ GPV  + FT+KPDTGVNA SFK+GDK+FIGT KLLP++RFT EG  GGGG
Sbjct:   46 PPAELAEAGSFMHSAEGELVCRLTNAMVPYFNAGIYMENKAKIGKVEEVFGPVTKIYFTIKPDTGVNAASFKSGDKVFIGTDKLLPLARFTNEGKKGGGG 145

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BLAST of mRNA_C-linearis_contig112.1532.1 vs. uniprot
Match: D0NS88_PHYIT (H/ACA ribonucleoprotein complex subunit n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NS88_PHYIT)

HSP 1 Score: 144 bits (363), Expect = 1.100e-39
Identity = 73/107 (68.22%), Postives = 85/107 (79.44%), Query Frame = 0

Query:    6 PSPPPA---ELGEFMHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKVGKVDEILGPVNGVMFTVKPDTGVNATSFKNGDKIFIGTQKLLPVSRFT---GEGSGGGGGR 106
            P  PPA   ELG FMH CE+EMVYK TN  VPYFNAGA+L+NKT++GKVDEILG +N VMFTVKPDTGV+A+SF+NGDK+FI   KLLP+SRFT   G+   G GGR
Sbjct:  109 PEGPPAFVVELGSFMHACENEMVYKSTNDKVPYFNAGAFLENKTRIGKVDEILGSINEVMFTVKPDTGVSASSFQNGDKVFISPDKLLPLSRFTEKPGKKPAGAGGR 215

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BLAST of mRNA_C-linearis_contig112.1532.1 vs. uniprot
Match: A0A5D6Y826_9STRA (H/ACA ribonucleoprotein complex subunit n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y826_9STRA)

HSP 1 Score: 142 bits (357), Expect = 1.920e-39
Identity = 73/107 (68.22%), Postives = 84/107 (78.50%), Query Frame = 0

Query:    6 PSPPPA---ELGEFMHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKVGKVDEILGPVNGVMFTVKPDTGVNATSFKNGDKIFIGTQKLLPVSRFTGEG---SGGGGGR 106
            P  PPA   ELG FMH CE+EMVYK TN  VPYFNAGA+L+NKT++GKVDEILG +N VMFTVKPDTGV+ATSFK GDK+FI   KLLP+SRFT +    +G  GGR
Sbjct:   48 PEGPPAHVVELGSFMHACENEMVYKSTNDKVPYFNAGAFLENKTRIGKVDEILGNINEVMFTVKPDTGVSATSFKAGDKVFISPDKLLPLSRFTEQPKKPAGAAGGR 154

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig112.1532.1 vs. uniprot

BLAST of mRNA_C-linearis_contig112.1532.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KV55_9PHAE	6.840e-57	98.88	H/ACA ribonucleoprotein complex subunit n=1 Tax=Ec...	[more]
A0A7S3USE8_HETAK	2.170e-48	81.52	H/ACA ribonucleoprotein complex subunit (Fragment)...	[more]
A0A835YSJ1_9STRA	5.550e-45	82.56	H/ACA ribonucleoprotein complex subunit n=1 Tax=Tr...	[more]
D8LD14_ECTSI	6.420e-43	95.83	H/ACA ribonucleoprotein complex subunit (Fragment)...	[more]
A0A7S2UZ93_9STRA	1.310e-42	72.04	H/ACA ribonucleoprotein complex subunit (Fragment)...	[more]
A0A6A4XZY0_9STRA	1.560e-41	70.53	H/ACA ribonucleoprotein complex subunit (Fragment)...	[more]
A0A024U6J9_9STRA	8.280e-41	70.53	H/ACA ribonucleoprotein complex subunit n=2 Tax=Ap...	[more]
A0A7S3HT16_9STRA	2.790e-40	67.00	H/ACA ribonucleoprotein complex subunit n=1 Tax=Sp...	[more]
D0NS88_PHYIT	1.100e-39	68.22	H/ACA ribonucleoprotein complex subunit n=1 Tax=Ph...	[more]
A0A5D6Y826_9STRA	1.920e-39	68.22	H/ACA ribonucleoprotein complex subunit n=1 Tax=Py...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038664	H/ACA RNP complex subunit Gar1/Naf1, Cbf5-binding domain	GENE3D	2.40.10.230		coord: 5..96 e-value: 2.4E-34 score: 119.0
IPR007504	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1	PFAM	PF04410	Gar1	coord: 11..96 e-value: 6.3E-29 score: 100.7
None	No IPR available	PANTHER	PTHR23237	NUCLEOLAR PROTEIN FAMILY A MEMBER 1 SNORNP PROTEIN GAR1	coord: 6..160
None	No IPR available	PRODOM	PD020235		coord: 12..95 e-value: 5.0E-26 score: 289.0
IPR009000	Translation protein, beta-barrel domain superfamily	SUPERFAMILY	50447	Translation proteins	coord: 12..84

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig112	contig	C-linearis_contig112:293760..294245 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig112.1532.1	mRNA_C-linearis_contig112.1532.1	Chordaria linearis ClinC8C monoicous	mRNA	C-linearis_contig112 293760..294245 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_C-linearis_contig112.1532.1 ID=prot_C-linearis_contig112.1532.1|Name=mRNA_C-linearis_contig112.1532.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=162bp
MSPPPPSPPPAELGEFMHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKVGK
VDEILGPVNGVMFTVKPDTGVNATSFKNGDKIFIGTQKLLPVSRFTGEGS
GGGGGRGGGRGGARGGGRGGGMRGGRGGGMRGGRGGGMRGGRGGGFSSPR
GRGGSRGRGRF*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR038664	Gar1/Naf1_Cbf5-bd_sf
IPR007504	H/ACA_rnp_Gar1/Naf1
IPR009000	Transl_B-barrel_sf