mRNA_C-linearis_contig112.1532.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig112.1532.1
Unique NamemRNA_C-linearis_contig112.1532.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig112.1532.1 vs. uniprot
Match: A0A6H5KV55_9PHAE (H/ACA ribonucleoprotein complex subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV55_9PHAE)

HSP 1 Score: 184 bits (468), Expect = 6.840e-57
Identity = 88/89 (98.88%), Postives = 89/89 (100.00%), Query Frame = 1 
Query:   34 ELGEFMHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKVGKVDEILGPVNGVMFTVKPDTGVNATSFKNGDKIFIGTQKLLPVSRFTGEGS 300
            ELGEFMHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKVGKVDEILGPVNGVMFTVKPDTGVNA+SFKNGDKIFIGTQKLLPVSRFTGEGS
Sbjct:   38 ELGEFMHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKVGKVDEILGPVNGVMFTVKPDTGVNASSFKNGDKIFIGTQKLLPVSRFTGEGS 126
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BLAST of mRNA_C-linearis_contig112.1532.1 vs. uniprot
Match: A0A7S3USE8_HETAK (H/ACA ribonucleoprotein complex subunit (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USE8_HETAK)

HSP 1 Score: 161 bits (407), Expect = 2.170e-48
Identity = 75/92 (81.52%), Postives = 82/92 (89.13%), Query Frame = 1 
Query:   34 ELGEFMHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKVGKVDEILGPVNGVMFTVKPDTGVNATSFKNGDKIFIGTQKLLPVSRFTGEGSGGG 309
            ELG+FMHPCE EMVYKLTN MVPYFNAGAYL+NKTK+GKVDEI GPVN +MFTVKPDTGV ATSFK GDK++IGT KLLP+SRFTG G  GG
Sbjct:   23 ELGDFMHPCEGEMVYKLTNEMVPYFNAGAYLENKTKIGKVDEIFGPVNEIMFTVKPDTGVIATSFKKGDKVWIGTDKLLPMSRFTGGGXXGG 114
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BLAST of mRNA_C-linearis_contig112.1532.1 vs. uniprot
Match: A0A835YSJ1_9STRA (H/ACA ribonucleoprotein complex subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSJ1_9STRA)

HSP 1 Score: 153 bits (386), Expect = 5.550e-45
Identity = 71/86 (82.56%), Postives = 78/86 (90.70%), Query Frame = 1 
Query:   34 ELGEFMHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKVGKVDEILGPVNGVMFTVKPDTGVNATSFKNGDKIFIGTQKLLPVSRFTG 291
            ELG F+H CE EMVYKLTNSMVPYFNAGAYL+NKTK+GKVDEILGP+NG  FTVKPD GVNATSFK+GDK+FIG  KLLP+SRFTG
Sbjct:   43 ELGIFVHACEGEMVYKLTNSMVPYFNAGAYLENKTKIGKVDEILGPINGSYFTVKPDGGVNATSFKDGDKVFIGPDKLLPMSRFTG 128
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BLAST of mRNA_C-linearis_contig112.1532.1 vs. uniprot
Match: D8LD14_ECTSI (H/ACA ribonucleoprotein complex subunit (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD14_ECTSI)

HSP 1 Score: 147 bits (371), Expect = 6.420e-43
Identity = 69/72 (95.83%), Postives = 71/72 (98.61%), Query Frame = 1 
Query:   31 AELGEFMHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKVGKVDEILGPVNGVMFTVKPDTGVNATSFKNGDKI 246
            +ELGEFMHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKVGKVDEILGPVNGVMFTVKPDTGVNA+SFKN DKI
Sbjct:   43 SELGEFMHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKVGKVDEILGPVNGVMFTVKPDTGVNASSFKNNDKI 114
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BLAST of mRNA_C-linearis_contig112.1532.1 vs. uniprot
Match: A0A7S2UZ93_9STRA (H/ACA ribonucleoprotein complex subunit (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZ93_9STRA)

HSP 1 Score: 148 bits (373), Expect = 1.310e-42
Identity = 67/93 (72.04%), Postives = 80/93 (86.02%), Query Frame = 1 
Query:   34 ELGEFMHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKVGKVDEILGPVNGVMFTVKPDTGVNATSFKNGDKIFIGTQKLLPVSRFTGEGSGGGG 312
            ELG FMHPCE EMVYKL ++MVPYFNAGA+L +KTK+GKVDEI GP+N +MFTVKPD GV+A SFK  DK+F+ T+KLLP+SRFTGEG+  GG
Sbjct:   49 ELGSFMHPCEGEMVYKLVHTMVPYFNAGAFLQDKTKLGKVDEIFGPINNIMFTVKPDAGVSAASFKAEDKVFVSTEKLLPMSRFTGEGAKRGG 141
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BLAST of mRNA_C-linearis_contig112.1532.1 vs. uniprot
Match: A0A6A4XZY0_9STRA (H/ACA ribonucleoprotein complex subunit (Fragment) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4XZY0_9STRA)

HSP 1 Score: 145 bits (366), Expect = 1.560e-41
Identity = 67/95 (70.53%), Postives = 78/95 (82.11%), Query Frame = 1 
Query:   34 ELGEFMHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKVGKVDEILGPVNGVMFTVKPDTGVNATSFKNGDKIFIGTQKLLPVSRFTGEGSGGGGGR 318
            ELG FMH CEDEMVYK T+  VPYFNAG YL+NKTK+GK+DEILG +N VMFTVKPD+GV A SFK+GDK++I   KLLP+SRFT +G   GGGR
Sbjct:   50 ELGTFMHACEDEMVYKSTSDKVPYFNAGVYLENKTKIGKLDEILGAINDVMFTVKPDSGVAAKSFKSGDKVYISPDKLLPLSRFTDQGKSSGGGR 144
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BLAST of mRNA_C-linearis_contig112.1532.1 vs. uniprot
Match: A0A024U6J9_9STRA (H/ACA ribonucleoprotein complex subunit n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024U6J9_9STRA)

HSP 1 Score: 144 bits (363), Expect = 8.280e-41
Identity = 67/95 (70.53%), Postives = 77/95 (81.05%), Query Frame = 1 
Query:   34 ELGEFMHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKVGKVDEILGPVNGVMFTVKPDTGVNATSFKNGDKIFIGTQKLLPVSRFTGEGSGGGGGR 318
            ELG F+H CEDEMVYK T+  VPYFNAGA+L+NKTK+GKVDEILG +N VMFTVKPD GV A SFK GDK++I   KLLP+SRFT +G   GGGR
Sbjct:   48 ELGVFLHACEDEMVYKSTSDKVPYFNAGAFLENKTKIGKVDEILGAINDVMFTVKPDAGVTAKSFKAGDKVYISPDKLLPLSRFTDQGKSSGGGR 142
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BLAST of mRNA_C-linearis_contig112.1532.1 vs. uniprot
Match: A0A7S3HT16_9STRA (H/ACA ribonucleoprotein complex subunit n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HT16_9STRA)

HSP 1 Score: 144 bits (362), Expect = 2.790e-40
Identity = 67/100 (67.00%), Postives = 81/100 (81.00%), Query Frame = 1 
Query:   25 PPAEL---GEFMHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKVGKVDEILGPVNGVMFTVKPDTGVNATSFKNGDKIFIGTQKLLPVSRFTGEGSGGGGG 315
            PPAEL   G FMH  E E+V +LTN+MVPYFNAG Y++NK K+GKV+E+ GPV  + FT+KPDTGVNA SFK+GDK+FIGT KLLP++RFT EG  GGGG
Sbjct:   46 PPAELAEAGSFMHSAEGELVCRLTNAMVPYFNAGIYMENKAKIGKVEEVFGPVTKIYFTIKPDTGVNAASFKSGDKVFIGTDKLLPLARFTNEGKKGGGG 145
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BLAST of mRNA_C-linearis_contig112.1532.1 vs. uniprot
Match: D0NS88_PHYIT (H/ACA ribonucleoprotein complex subunit n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NS88_PHYIT)

HSP 1 Score: 144 bits (363), Expect = 1.100e-39
Identity = 73/107 (68.22%), Postives = 85/107 (79.44%), Query Frame = 1 
Query:   16 PSPPPA---ELGEFMHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKVGKVDEILGPVNGVMFTVKPDTGVNATSFKNGDKIFIGTQKLLPVSRFT---GEGSGGGGGR 318
            P  PPA   ELG FMH CE+EMVYK TN  VPYFNAGA+L+NKT++GKVDEILG +N VMFTVKPDTGV+A+SF+NGDK+FI   KLLP+SRFT   G+   G GGR
Sbjct:  109 PEGPPAFVVELGSFMHACENEMVYKSTNDKVPYFNAGAFLENKTRIGKVDEILGSINEVMFTVKPDTGVSASSFQNGDKVFISPDKLLPLSRFTEKPGKKPAGAGGR 215
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BLAST of mRNA_C-linearis_contig112.1532.1 vs. uniprot
Match: A0A5D6Y826_9STRA (H/ACA ribonucleoprotein complex subunit n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y826_9STRA)

HSP 1 Score: 142 bits (357), Expect = 1.920e-39
Identity = 73/107 (68.22%), Postives = 84/107 (78.50%), Query Frame = 1 
Query:   16 PSPPPA---ELGEFMHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKVGKVDEILGPVNGVMFTVKPDTGVNATSFKNGDKIFIGTQKLLPVSRFTGEG---SGGGGGR 318
            P  PPA   ELG FMH CE+EMVYK TN  VPYFNAGA+L+NKT++GKVDEILG +N VMFTVKPDTGV+ATSFK GDK+FI   KLLP+SRFT +    +G  GGR
Sbjct:   48 PEGPPAHVVELGSFMHACENEMVYKSTNDKVPYFNAGAFLENKTRIGKVDEILGNINEVMFTVKPDTGVSATSFKAGDKVFISPDKLLPLSRFTEQPKKPAGAAGGR 154
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig112.1532.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KV55_9PHAE6.840e-5798.88H/ACA ribonucleoprotein complex subunit n=1 Tax=Ec... [more]
A0A7S3USE8_HETAK2.170e-4881.52H/ACA ribonucleoprotein complex subunit (Fragment)... [more]
A0A835YSJ1_9STRA5.550e-4582.56H/ACA ribonucleoprotein complex subunit n=1 Tax=Tr... [more]
D8LD14_ECTSI6.420e-4395.83H/ACA ribonucleoprotein complex subunit (Fragment)... [more]
A0A7S2UZ93_9STRA1.310e-4272.04H/ACA ribonucleoprotein complex subunit (Fragment)... [more]
A0A6A4XZY0_9STRA1.560e-4170.53H/ACA ribonucleoprotein complex subunit (Fragment)... [more]
A0A024U6J9_9STRA8.280e-4170.53H/ACA ribonucleoprotein complex subunit n=2 Tax=Ap... [more]
A0A7S3HT16_9STRA2.790e-4067.00H/ACA ribonucleoprotein complex subunit n=1 Tax=Sp... [more]
D0NS88_PHYIT1.100e-3968.22H/ACA ribonucleoprotein complex subunit n=1 Tax=Ph... [more]
A0A5D6Y826_9STRA1.920e-3968.22H/ACA ribonucleoprotein complex subunit n=1 Tax=Py... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig112contigC-linearis_contig112:293760..294245 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.1
Seed ortholog evalue7e-33
Seed eggNOG ortholog2880.D8LD14
Preferred nameGAR1
KEGG rclassRC00002,RC00017,RC02795
KEGG koko:K02866,ko:K11128,ko:K17103
KEGG ReactionR01800
KEGG Pathwayko00260,ko00564,ko01100,ko01110,ko03008,ko03010,map00260,map00564,map01100,map01110,map03008,map03010
KEGG ModuleM00093,M00177,M00179,M00425
Hectar predicted targeting categoryother localisation
GOsGO:0000154,GO:0000454,GO:0000723,GO:0001522,GO:0001650,GO:0001651,GO:0002376,GO:0002520,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005697,GO:0005730,GO:0005732,GO:0005737,GO:0006139,GO:0006259,GO:0006278,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007004,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009987,GO:0010467,GO:0010833,GO:0015030,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0016073,GO:0016074,GO:0016604,GO:0018130,GO:0019438,GO:0022613,GO:0030097,GO:0030515,GO:0031118,GO:0031120,GO:0031429,GO:0031974,GO:0031976,GO:0031981,GO:0031984,GO:0032200,GO:0032501,GO:0032502,GO:0032991,GO:0034357,GO:0034470,GO:0034513,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040031,GO:0042254,GO:0042592,GO:0042651,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0046483,GO:0048513,GO:0048534,GO:0048731,GO:0048856,GO:0051276,GO:0055035,GO:0060216,GO:0060249,GO:0065007,GO:0065008,GO:0070013,GO:0070034,GO:0071704,GO:0071840,GO:0071897,GO:0072588,GO:0072589,GO:0090304,GO:0090661,GO:0097159,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990904
EggNOG free text desc.box H/ACA snoRNA binding
EggNOG OGsCOG3277@1,KOG3262@2759
Ec32 ortholog descriptionGar1 subunit of the H/ACA ribonucleoprotein complex
Ec32 orthologEc-01_001890.1
EC2.7.8.8
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03009,ko03011,ko03032
Exons1
Model size486
Cds size486
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927492.7296112-CDS-C-linearis_contig112:293759..2942451622927492.7296112-CDS-C-linearis_contig112:293759..294245Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 293760..294245 +
1690879730.1963887-CDS-C-linearis_contig112:293759..2942451690879730.1963887-CDS-C-linearis_contig112:293759..294245Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 293760..294245 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig112.1532.1prot_C-linearis_contig112.1532.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig112 293760..294245 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig112.1532.1

>prot_C-linearis_contig112.1532.1 ID=prot_C-linearis_contig112.1532.1|Name=mRNA_C-linearis_contig112.1532.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=162bp
MSPPPPSPPPAELGEFMHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKVGK
VDEILGPVNGVMFTVKPDTGVNATSFKNGDKIFIGTQKLLPVSRFTGEGS
GGGGGRGGGRGGARGGGRGGGMRGGRGGGMRGGRGGGMRGGRGGGFSSPR
GRGGSRGRGRF*
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mRNA from alignment at C-linearis_contig112:293760..294245+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig112.1532.1 ID=mRNA_C-linearis_contig112.1532.1|Name=mRNA_C-linearis_contig112.1532.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=486bp|location=Sequence derived from alignment at C-linearis_contig112:293760..294245+ (Chordaria linearis ClinC8C monoicous)
ATGTCGCCCCCACCACCATCACCACCACCGGCAGAGCTGGGCGAGTTCAT
GCACCCCTGCGAGGACGAGATGGTGTACAAGCTCACCAACAGCATGGTGC
CGTACTTCAACGCCGGCGCGTACCTCGATAACAAGACCAAGGTCGGCAAG
GTGGACGAGATCCTCGGCCCCGTCAACGGCGTCATGTTCACCGTCAAGCC
CGACACGGGCGTCAACGCCACGTCCTTCAAGAACGGCGACAAGATCTTCA
TCGGCACGCAGAAGCTGCTCCCCGTGTCGAGGTTCACAGGAGAGGGCAGC
GGCGGCGGGGGCGGCCGCGGCGGTGGCAGGGGGGGCGCGCGTGGGGGCGG
GAGGGGAGGAGGCATGAGGGGTGGGAGGGGCGGCGGTATGAGGGGGGGTA
GGGGAGGAGGCATGAGAGGGGGGCGTGGTGGGGGGTTTTCGTCTCCTCGG
GGGAGGGGTGGCAGCCGAGGCCGGGGTAGATTTTAG
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Coding sequence (CDS) from alignment at C-linearis_contig112:293760..294245+

>mRNA_C-linearis_contig112.1532.1 ID=mRNA_C-linearis_contig112.1532.1|Name=mRNA_C-linearis_contig112.1532.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=972bp|location=Sequence derived from alignment at C-linearis_contig112:293760..294245+ (Chordaria linearis ClinC8C monoicous)
ATGTCGCCCCCACCACCATCACCACCACCGGCAGAGCTGGGCGAGTTCAT
GCACCCCTGCGAGGACGAGATGGTGTACAAGCTCACCAACAGCATGGTGC
CGTACTTCAACGCCGGCGCGTACCTCGATAACAAGACCAAGGTCGGCAAG
GTGGACGAGATCCTCGGCCCCGTCAACGGCGTCATGTTCACCGTCAAGCC
CGACACGGGCGTCAACGCCACGTCCTTCAAGAACGGCGACAAGATCTTCA
TCGGCACGCAGAAGCTGCTCCCCGTGTCGAGGTTCACAGGAGAGGGCAGC
GGCGGCGGGGGCGGCCGCGGCGGTGGCAGGGGGGGCGCGCGTGGGGGCGG
GAGGGGAGGAGGCATGAGGGGTGGGAGGGGCGGCGGTATGAGGGGGGGTA
GGGGAGGAGGCATGAGAGGGGGGCGTGGTGGGGGGTTTTCGTCTCCTCGG
GGGAGGGGTGGCAGCCGAGGCCGGGGTAGATTTTAGATGTCGCCCCCACC
ACCATCACCACCACCGGCAGAGCTGGGCGAGTTCATGCACCCCTGCGAGG
ACGAGATGGTGTACAAGCTCACCAACAGCATGGTGCCGTACTTCAACGCC
GGCGCGTACCTCGATAACAAGACCAAGGTCGGCAAGGTGGACGAGATCCT
CGGCCCCGTCAACGGCGTCATGTTCACCGTCAAGCCCGACACGGGCGTCA
ACGCCACGTCCTTCAAGAACGGCGACAAGATCTTCATCGGCACGCAGAAG
CTGCTCCCCGTGTCGAGGTTCACAGGAGAGGGCAGCGGCGGCGGGGGCGG
CCGCGGCGGTGGCAGGGGGGGCGCGCGTGGGGGCGGGAGGGGAGGAGGCA
TGAGGGGTGGGAGGGGCGGCGGTATGAGGGGGGGTAGGGGAGGAGGCATG
AGAGGGGGGCGTGGTGGGGGGTTTTCGTCTCCTCGGGGGAGGGGTGGCAG
CCGAGGCCGGGGTAGATTTTAG
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