prot_C-linearis_contig111.1495.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig111.1495.1
Unique Nameprot_C-linearis_contig111.1495.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length152
Homology
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BLAST of mRNA_C-linearis_contig111.1495.1 vs. uniprot
Match: D7FL62_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL62_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 1.790e-54
Identity = 98/121 (80.99%), Postives = 105/121 (86.78%), Query Frame = 0 
Query:    1 MKGALAA---VCVGLLGASNAFVVPGPSKIISGRSTRASTSQVIVMGRGDTRTAKGKRMRHTYGKCRPQKQKEVIYFEGEIVKKAAPVARRWENIEYDEASMPKPAPAVEAAAADVEEAVE 118
            M GALA    V   +   SNAFVVPGPS+++SGRSTRASTSQVIVMGRGDTRT KGKRMRH+YGKCRPQKQKEV+YFEGEIVKKAAPVARRWENIEYDEASMPKPAP VEAAA +V EA E
Sbjct:    1 MHGALATLGLVVAMMASVSNAFVVPGPSQVVSGRSTRASTSQVIVMGRGDTRTTKGKRMRHSYGKCRPQKQKEVVYFEGEIVKKAAPVARRWENIEYDEASMPKPAP-VEAAAEEVTEAEE 120
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig111.1495.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FL62_ECTSI1.790e-5480.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR03082630S ribosomal proteinTIGRFAMTIGR04560TIGR04560coord: 43..67
e-value: 1.5E-9
score: 35.7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..13
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..151
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..18
score: 0.646

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig111contigC-linearis_contig111:262322..264427 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig111.1495.1mRNA_C-linearis_contig111.1495.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig111 262193..265331 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig111.1495.1 ID=prot_C-linearis_contig111.1495.1|Name=mRNA_C-linearis_contig111.1495.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=152bp
MKGALAAVCVGLLGASNAFVVPGPSKIISGRSTRASTSQVIVMGRGDTRT
AKGKRMRHTYGKCRPQKQKEVIYFEGEIVKKAAPVARRWENIEYDEASMP
KPAPAVEAAAADVEEAVEDAVEEASPVMAVEEAAVGEVAEAAPAAEEAVE
A*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR030826Ribo_THX