mRNA_C-linearis_contig111.1495.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig111.1495.1
Unique NamemRNA_C-linearis_contig111.1495.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig111.1495.1 vs. uniprot
Match: D7FL62_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL62_ECTSI)

HSP 1 Score: 179 bits (454), Expect = 8.270e-51
Identity = 98/121 (80.99%), Postives = 105/121 (86.78%), Query Frame = 1 
Query:  130 MKGALAA---VCVGLLGASNAFVVPGPSKIISGRSTRASTSQVIVMGRGDTRTAKGKRMRHTYGKCRPQKQKEVIYFEGEIVKKAAPVARRWENIEYDEASMPKPAPAVEAAAADVEEAVE 483
            M GALA    V   +   SNAFVVPGPS+++SGRSTRASTSQVIVMGRGDTRT KGKRMRH+YGKCRPQKQKEV+YFEGEIVKKAAPVARRWENIEYDEASMPKPAP VEAAA +V EA E
Sbjct:    1 MHGALATLGLVVAMMASVSNAFVVPGPSQVVSGRSTRASTSQVIVMGRGDTRTTKGKRMRHSYGKCRPQKQKEVVYFEGEIVKKAAPVARRWENIEYDEASMPKPAP-VEAAAEEVTEAEE 120
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig111.1495.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FL62_ECTSI8.270e-5180.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig111contigC-linearis_contig111:262193..265331 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-19_005370.1
Exons3
Model size1489
Cds size456
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig111.1495.1prot_C-linearis_contig111.1495.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig111 262322..264427 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927482.724172-UTR-C-linearis_contig111:262192..2623211622927482.724172-UTR-C-linearis_contig111:262192..262321Chordaria linearis ClinC8C monoicousUTRC-linearis_contig111 262193..262321 +
1690879726.646653-UTR-C-linearis_contig111:262192..2623211690879726.646653-UTR-C-linearis_contig111:262192..262321Chordaria linearis ClinC8C monoicousUTRC-linearis_contig111 262193..262321 +
1622927482.7700183-UTR-C-linearis_contig111:264427..2653311622927482.7700183-UTR-C-linearis_contig111:264427..265331Chordaria linearis ClinC8C monoicousUTRC-linearis_contig111 264428..265331 +
1690879726.6905851-UTR-C-linearis_contig111:264427..2653311690879726.6905851-UTR-C-linearis_contig111:264427..265331Chordaria linearis ClinC8C monoicousUTRC-linearis_contig111 264428..265331 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927482.7342072-CDS-C-linearis_contig111:262321..2624381622927482.7342072-CDS-C-linearis_contig111:262321..262438Chordaria linearis ClinC8C monoicousCDSC-linearis_contig111 262322..262438 +
1690879726.6593943-CDS-C-linearis_contig111:262321..2624381690879726.6593943-CDS-C-linearis_contig111:262321..262438Chordaria linearis ClinC8C monoicousCDSC-linearis_contig111 262322..262438 +
1622927482.7456145-CDS-C-linearis_contig111:263541..2635941622927482.7456145-CDS-C-linearis_contig111:263541..263594Chordaria linearis ClinC8C monoicousCDSC-linearis_contig111 263542..263594 +
1690879726.669394-CDS-C-linearis_contig111:263541..2635941690879726.669394-CDS-C-linearis_contig111:263541..263594Chordaria linearis ClinC8C monoicousCDSC-linearis_contig111 263542..263594 +
1622927482.7597988-CDS-C-linearis_contig111:264141..2644271622927482.7597988-CDS-C-linearis_contig111:264141..264427Chordaria linearis ClinC8C monoicousCDSC-linearis_contig111 264142..264427 +
1690879726.6794927-CDS-C-linearis_contig111:264141..2644271690879726.6794927-CDS-C-linearis_contig111:264141..264427Chordaria linearis ClinC8C monoicousCDSC-linearis_contig111 264142..264427 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig111.1495.1

>prot_C-linearis_contig111.1495.1 ID=prot_C-linearis_contig111.1495.1|Name=mRNA_C-linearis_contig111.1495.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=152bp
MKGALAAVCVGLLGASNAFVVPGPSKIISGRSTRASTSQVIVMGRGDTRT
AKGKRMRHTYGKCRPQKQKEVIYFEGEIVKKAAPVARRWENIEYDEASMP
KPAPAVEAAAADVEEAVEDAVEEASPVMAVEEAAVGEVAEAAPAAEEAVE
A*
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mRNA from alignment at C-linearis_contig111:262193..265331+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig111.1495.1 ID=mRNA_C-linearis_contig111.1495.1|Name=mRNA_C-linearis_contig111.1495.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3139bp|location=Sequence derived from alignment at C-linearis_contig111:262193..265331+ (Chordaria linearis ClinC8C monoicous)
CGTCATCATCTGCCTCACCCACGCCAAGCACGCTCCCAGCACGCCAAGCA
CAGGTCTCTCGTGCTTGCACCGCAGTAGAAGCCCCACTTTCAGCTTGTCT
TTTACCAATCTCTTTTCACCAGCAGTACCATGAAAGGAGCTCTCGCCGCC
GTCTGTGTCGGCCTCCTCGGAGCCTCGAACGCTTTCGTCGTGCCAGGGCC
GTCCAAGATCATCTCCGGCCGCTCTACGCGTGCCTCTACATCCCAGGTAC
ACGAGTGCGGCTTAGTTATGTAGGCCAGAGGGTGCCTAGAGCGGTGTGGG
CGATGTTGCGTGTATCGGTTGCAGTTTGACGGTCTGCGTGTGCGTTGGGC
GCACACCCGTCAGACTGTATTTACGTATTTTGCATGCGGCAGGTTGATGT
GGCCAAGTAGGCAACCAAAGAGAGAACCGGGTCGGGTTAGGCAAGGCGGC
AGCAGAAGCAGAGGGTTCGTTCATGCTGTCGCGCAGGACTAGCGCTTTGA
GAAGGTTAGGCTGTGTGGACAAGCTTGGCAGACGATGTTGACGAAGGAAG
CGTAATGTACTTGGTTTTAGAGTTAGCGAGACAACATGTGTGTGGCGCAC
CAACGGACACGGTTGTTTTCCTCAGCAGTACTCTATGTACTGCTGTACCA
GGACGCAGTCTCGAGACCACTGGTGTGCCACAGTGGTAGTGATAGCACCG
GAGTGTCTGCATGGGTGGGTGAATCGTTTCCCGGCAGTTGCACGTGGGGT
GCAGTAGACAGCAGACCACTTGAGTGCGTGACGTGTGTTCGATTCATAAA
ACTGCCTTCAACTAATTTAGGCAAGAAAACACACCCTTTTGCTCTAAAAT
AGTGTCCAACTTGAGGCTTTTAGGCCACAGCTGCTGTATGCATACAACGC
TGTGGGGATGGAAATAAAAAAGAGGGCTATTTTCTGTTGTTGCACCAGAG
AAGGTATTGTGTCCTGATATCTACCTGCCTTTTATTTCGTCGTTGTGCTC
ATATTGTCTGCTCCAAACAAACAATTAATTAATTAAAAAAAATAAAAAAC
ACACGAGGGTGAGGCAACCTGCACCACGGATCAATAGATAATATATATAT
AGGTATATATACTCTATTGTCTGCTCCAAACAAACAATTAATTAATTAAA
AAAAATAAAAAACACCTATATATCGTATTCATCCGTTGTCCGTCGTGTGC
TGAAAGTATGGTCTCTCCACGTTCTGCCCTCTGTTTACTACCGGTACTCC
GTATTTCCGTATTTACCCATGTTTTCTTGCTTGTGGTGCGGTGCCGTGCG
GATGGACGTGCGTGCATCCCTTTTCGTTATTGCTTGTTTTGATTTCTAGG
TGATTGTGATGGGCAGGGGGGACACTCGCACAGCCAAGGGCAAGCGCATG
AGGTAAGACAAAGCAGCCAGCTGACTGACCATCATGGTGGTGGTAGAGCG
TTACTGGTGTATGTGCCATGATGAAGGGCCGCATGTACGACATACAGCCA
CACGTATGTACGTACATTTCCGTCATATGGGTTGACCTGACATACCTTGG
CCTCGGTTCCCCATTCCGTACCTCCACACCTCGAAACAGACACGAGTTCA
GATGTATCCAGTCTTGAGCGGGTGTAATTTATATTCTTCCAAGTATACTG
ATGGCACTCAACATGCGAGTTTTACTCTCAACATACAAATCGAGATCAAT
GAAGTAGGCGAAGAGGGGGAGCTGATCGAGCCTGGACATGGGAATATACC
AATGAACCAATGAAATTCCGGCTGGACCGCACCCGTACATTTCCGCCGCC
AATTTGAATTTTCTCACCAATGAACCCTTCCCCCCCCCCCACCCCAACGT
CCCCGTGCTCGTTGGCTTATTTCTCCGAAACCCTACGATATCACTGCCAC
CGCGACGCGTGACATGTCGGCGCAAAAAAACTGCCCCACTCCCGACCAGG
CACACGTACGGCAAATGCCGTCCCCAGAAGCAGAAGGAGGTGATCTACTT
CGAGGGTGAGATCGTGAAGAAGGCGGCCCCCGTGGCGAGGAGGTGGGAGA
ACATCGAATACGACGAGGCGTCCATGCCCAAGCCCGCGCCCGCGGTCGAG
GCCGCGGCGGCGGACGTCGAGGAGGCTGTGGAGGATGCAGTTGAGGAGGC
TTCTCCCGTGATGGCCGTAGAAGAGGCGGCCGTGGGGGAGGTTGCCGAGG
CCGCGCCCGCAGCTGAGGAGGCTGTGGAGGCGTAAATTCGGGGGTGCCGT
TTTCCGGTTCACGTAGTTTGAGAAGACATACATACAAGAATAGTTTGAAA
TAAAAATAACGTTTTGAGGGGAGAGCACGCTGAGAGAAGGGTCCACAGGT
GTGCGAGACTTGAACAATCGGTCTCTCGTGGGGGACGGAGTTACTCCCCC
GAAACGCTTTAAGCTTTAGACGTTTTGGCTCCTCGGGTGGGGTCTATGGA
GGAGTGTCCACAAAGTTATGCTGTTGAATGTGAATCCCACTTAAATAGCA
AGAGACAAGCAGTGGTTGACGGGAGATTTAGCAGCTTTCGTGTTTTGGGT
TTGCGGGCGGGTGGCCGCTCTTGTTTTGTTTTTCCTGACCATCATCTCCA
GATAAAATTAGCAACGAAGGGGTCCAAGTCAAAGGCGGGTGCAGCTCGTT
CCTAGCTGTCCGAATTTTGGTGCGATGCCGTAGAGACGTGCACATTCAAT
GCCAGACTCGGAGCGCGGGAGTGCGTCAAGATGATTTTGGTTTGTTGTGC
GTGAGGGTGAGGCTCAGTCGAGAGCCATCGTTTGCAGAGATGTTGGAAAT
CTTGGTGTTAAAAGCGTCTTTCTCCTAAGGAGTACTGGTATGGAAGAAGG
CGTTTCCCTGCCGACGCAACCGCCGTTTGGGTTCTGCTGCTGTTGTTGAG
ACGGTTTCTTGGACATCAAATTTTTAAATCGCGCTTGACAGGGTGTATAG
CCGTGGCTAAATCAAGAACCTCCTCCATGCAGCAAATTCCCATTTTTTTT
TAATCGGCGGCATCTCATTCGCTGCCCTCTTTCGCGCAGGATGTTCGTCG
CAGAACATCGCCTCTCTGCTATTAATAGTACCCACAACAGCAGTAGTCGT
GTTCTCCTTTCAAGAGCGTGCATGTCTTATGGCAGTCTA
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Coding sequence (CDS) from alignment at C-linearis_contig111:262193..265331+

>mRNA_C-linearis_contig111.1495.1 ID=mRNA_C-linearis_contig111.1495.1|Name=mRNA_C-linearis_contig111.1495.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=912bp|location=Sequence derived from alignment at C-linearis_contig111:262193..265331+ (Chordaria linearis ClinC8C monoicous)
ATGAAAGGAGCTCTCGCCGCCGTCTGTGTCGGCCTCCTCGGAGCCTCGAA
CGCTTTCGTCGTGCCAGGGCCGTCCAAGATCATCTCCGGCCGCTCTACGC
GTGCCTCTACATCCCAGATGAAAGGAGCTCTCGCCGCCGTCTGTGTCGGC
CTCCTCGGAGCCTCGAACGCTTTCGTCGTGCCAGGGCCGTCCAAGATCAT
CTCCGGCCGCTCTACGCGTGCCTCTACATCCCAGGTGATTGTGATGGGCA
GGGGGGACACTCGCACAGCCAAGGGCAAGCGCATGAGGTGATTGTGATGG
GCAGGGGGGACACTCGCACAGCCAAGGGCAAGCGCATGAGGCACACGTAC
GGCAAATGCCGTCCCCAGAAGCAGAAGGAGGTGATCTACTTCGAGGGTGA
GATCGTGAAGAAGGCGGCCCCCGTGGCGAGGAGGTGGGAGAACATCGAAT
ACGACGAGGCGTCCATGCCCAAGCCCGCGCCCGCGGTCGAGGCCGCGGCG
GCGGACGTCGAGGAGGCTGTGGAGGATGCAGTTGAGGAGGCTTCTCCCGT
GATGGCCGTAGAAGAGGCGGCCGTGGGGGAGGTTGCCGAGGCCGCGCCCG
CAGCTGAGGAGGCTGTGGAGGCGTAAGCACACGTACGGCAAATGCCGTCC
CCAGAAGCAGAAGGAGGTGATCTACTTCGAGGGTGAGATCGTGAAGAAGG
CGGCCCCCGTGGCGAGGAGGTGGGAGAACATCGAATACGACGAGGCGTCC
ATGCCCAAGCCCGCGCCCGCGGTCGAGGCCGCGGCGGCGGACGTCGAGGA
GGCTGTGGAGGATGCAGTTGAGGAGGCTTCTCCCGTGATGGCCGTAGAAG
AGGCGGCCGTGGGGGAGGTTGCCGAGGCCGCGCCCGCAGCTGAGGAGGCT
GTGGAGGCGTAA
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