prot_C-linearis_contig110.1459.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig110.1459.1
Unique Nameprot_C-linearis_contig110.1459.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length755
Homology
BLAST of mRNA_C-linearis_contig110.1459.1 vs. uniprot
Match: D8LEM0_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEM0_ECTSI)

HSP 1 Score: 373 bits (958), Expect = 9.680e-115
Identity = 346/772 (44.82%), Postives = 428/772 (55.44%), Query Frame = 0
Query:    8 KETALLKAAVESLRAGLREKEDAVTELEREKEGXXXXXXXXXXXXXXXXXXXXXXXXXEAQIQRLEAKLTQAGNERSLTMSLVDTLKSAQNDLRAAHAQVSQRYTELENTAEDSAEAIRRGNVLLHSQQLKIDAQSRQVKRQEEDLVSLRQERELHLEKSDETAAELAQILRRERAVQGSITDAQAEVEELKGELGHMREAFGRHRNVLRKNQGVIDAHETALKDVSRSELLSLSLEAERQSARHLQASTQAASEMARVTAEKNSAVHESGALRIEIEDVKDNLEEAGRKLDEVQAKQSATAAMATAAGSRSTAKYRGRHINTLQQQQHHTSPEAHRDSLSQIAVSDRQPHPVAHPDRPESLFINPNNTNSNQREWGNNATLQQ-RSISPHDGSQGGTGVATSADQRRGNDLNQSRGDHSALQRPHHQVPTAATPGESPSSSIFRPSTGD-FLPPTGAGAPKDNPPHLSNSVGANDKP---PLRSP-NAAGFARQEPPASXXXXXXXXXXXXXXXXF-----GGTTRDFGSQRNAHVVAVPPEDRGPEE--SEAKTNGEGDG----DRGAAKRTSSARRSRSRSPLANASINGEEGADDGNETAVMTTRLLSPSSVGS------RKRAKTTAANVDAGDDGSRAGDAIGDGDGAASPAXXXXXGRDAAGYSR---PPRLSSTGTARREPSFSIGIGNSRKDTIR-HGDNGAPDDTDGLSDGVCASCGDIPYGLMINCSGCYRQHHSSCVPEGQRVGKGLGA-VFHCSKCSNN 751
            K+ ALLKAA E+LRAG+REKED +TEL                                  I+ LEA+L +A   R+LTMSLV+TLKSAQNDLRA+HAQVSQRY ELEN  EDSAEA+RRGNVLLHSQQLK DAQ+RQ+KRQ+EDL +LR+ERE  L K+D  A ELAQ+LRRERA Q SI DAQ EV +LK       +AF +HR V+RK+Q VID HE ALKD +RS+LLSLSLEA++QS+RH QAS +AA+E AR TA+KN+A+ ES ALRIE + +KD LEEAGRKLDE+QA+QS +AA   A  +R++    G H N   QQ  HT P+ + DS SQ+A   R+     +    ES+F N  + N+ Q +  N+    Q RS  P        G  T  D              S++QR +   P          SS  RPS+   F+    AG P++    L ++ G  D     P  SP  AAG  R+   +  XXXXXXXXXXXXXXX      G   R  G+Q     V      RGP +    A   G+ DG    D G    +    RSR RSP       G + ++DG+E      R    S  GS      RKRAK  A   D                      XXXXX     G +    PP LS   T+ R   F  G     + +++  G +G     D   +GVC SCGD PYGLMINCSGC RQ+HSSCVP+GQ+VGKGLGA VF CSKC +N
Sbjct:   71 KDVALLKAAAENLRAGIREKEDVITEL----------------------------------IESLEAELAKAEAGRALTMSLVETLKSAQNDLRASHAQVSQRYAELENMLEDSAEAVRRGNVLLHSQQLKTDAQARQIKRQDEDLATLREERETQLAKADRNATELAQVLRRERAGQSSIADAQVEVGDLKAXXXXXXDAFAKHRGVVRKSQEVIDVHEKALKD-ARSKLLSLSLEADKQSSRHHQASAEAATETARATADKNAALRESRALRIEKDGLKDKLEEAGRKLDELQAQQSDSAAAMEAVAARNSVAVPGGHNNNGPQQ--HTYPKPNSDSSSQVATRGRRQQDFEN--HAESIFDN-GSANAPQVQIDNSPRQHQGRSSPPLLSVPTSLGTTTQGDNT------------SSVQRSYRAAPAEEAAEGQKLSSTNRPSSSTVFVRQAEAGLPREG--ALKSTNGRTDNNHNIPSSSPLPAAGVGRRSSASPAXXXXXXXXXXXXXXXXXRSGEGDAGRIGGTQIVHREVTTVSHSRGPNDVFDGAGRRGQRDGTDVVDGGRRGASGLRFRSRLRSPA------GTDYSNDGSEAV----RAAGGSVDGSDDAGSKRKRAKRGALEADX--------------------XXXXXXXXXXGGLTDSLPPPLLSGAATSSRLSHFDNGNSRPGEKSVQVQGKDG-----DSTPEGVCPSCGDTPYGLMINCSGCARQYHSSCVPDGQKVGKGLGATVFLCSKCRSN 753          
BLAST of mRNA_C-linearis_contig110.1459.1 vs. uniprot
Match: A0A6H5KZW7_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZW7_9PHAE)

HSP 1 Score: 266 bits (680), Expect = 1.700e-75
Identity = 281/679 (41.38%), Postives = 347/679 (51.10%), Query Frame = 0
Query:  110 RYTELENTAEDSAEAIRRGNVLLHSQQLKIDAQSRQVKRQEEDLVSLRQERELHLEKSDETAAELAQILRRERAVQGSITDAQAEVEELKGELGHMREAFGRHRNVLRKNQGVIDAHETALKDVSRSELLSLSLEAERQSARHLQASTQAASEMARVTAEKNSAVHESGALRIEIEDVKDNLEEAGRKLDEVQAKQSATAAMATAAGSRSTAKYRGRHINTLQQQQHHTSPEAHRDSLSQIAVSDRQPHPVAHPDRPESLFINPNNTNSNQREWGNNATLQQRSISPHDGSQGGTGVATSADQRRGNDLNQSRGDHSALQRPHHQVPTAATPGESPS-SSIFRPSTGDFLPPTGAGAPKDNPPH--LSNSVGANDKP---PLRSP-NAAGFAR--QEPPASXXXXXXXXXXXXXXXXFGG---TTRDFGSQRNAHVVAVPPEDRGPEESEAKTNGEGDG------------------------DRGAAKRTSSARRSRSRSPLANASINGEEGADDGNETAVMTTRLLSPSSVGSRKRAKTTAANVDAGDDGSRAGDAIGDGDGAASPAXXXXXGRDAAGYSRPPRLSSTGTARREPSFSIGIGNSRKDTIRHGDNGAPDDTDGLSDGVCASCGDIPYGLMINCSGCYRQHHSSCVPEGQRVGKGLGA-VFHCSKCSNN 751
            RY ELEN  EDSAEA+RRGNVLLHSQQLK DAQ+RQ+KRQ+EDL +LR+ERE  L K+D  A ELAQ+LRRERA Q SI DAQ EV +LK EL  MR+AF +   V+RK+Q VI+AHE ALK+ +RSELLSLSLEA++QS+RH QAS +AA+E AR TA+KN+A+ ES ALRIE E +KD LEEAGR    +QA++S   A   A  +R++A  +G H N+  QQ  HT P+ + DS SQ+A   R+         PE  + N  ++N+ Q +  N    QQ   SP   S     V TS           ++G  S+  R  ++V +A    E    SS  RPS+   L      A  ++P    L ++ G  D     P  SP  AAG  R     PA+  XXXXXXXXXX     GG     R  G+Q     V     +RGP       N   DG                                              A+    +G+DD                   RKRAKT     DA                  +  XXXXX         PP LS   T+ R   F  G     +     G  G     D   +GVC SCGD PYGLMINCSGC RQ+HSSCVP+GQ+VGKGLGA VF CSKCS N
Sbjct:   33 RYAELENMLEDSAEALRRGNVLLHSQQLKTDAQARQIKRQDEDLATLREERETQLAKADRNATELAQVLRRERAGQSSIADAQVEVGDLKAELAEMRDAFAK--GVVRKSQEVINAHEKALKN-ARSELLSLSLEADKQSSRHHQASAEAATETARATADKNAALRESRALRIEKEGLKDKLEEAGRXXXXLQAQRSELGAAMEAVAARNSAAVQGGHSNSGPQQ--HTYPKPNSDSSSQVATRGRRQQDFEK--HPECTYDN-GSSNAPQVQIDNFPRQQQGRSSPPSLS-----VHTSLGTT-------TQGGASSSLRRSYRVASAEEAAEGQKLSSTHRPSSKSVL---SRQAEPESPREGALKSTNGRTDNNHSLPSSSPFPAAGVGRVASASPATSAXXXXXXXXXXTDRRKGGEGDAGRIGGTQNIDPDVTAVSHNRGP-------NNVLDGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAARVDVDGSDDAGSK---------------RKRAKTGPLEADA------------------AXXXXXXXXXGLTDSLSPPLLSGATTSSRLSHFDAGNNRPGEAVQVQGKGG-----DSTLEGVCPSCGDTPYGLMINCSGCARQYHSSCVPDGQKVGKGLGATVFLCSKCSGN 643          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig110.1459.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEM0_ECTSI9.680e-11544.82PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KZW7_9PHAE1.700e-7541.38PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 132..166
NoneNo IPR availableCOILSCoilCoilcoord: 17..82
NoneNo IPR availableCOILSCoilCoilcoord: 188..208
NoneNo IPR availableCOILSCoilCoilcoord: 277..304
NoneNo IPR availablePANTHERPTHR43939FAMILY NOT NAMEDcoord: 12..445
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 675..753
e-value: 1.2E-5
score: 27.2
IPR019786Zinc finger, PHD-type, conserved sitePROSITEPS01359ZF_PHD_1coord: 703..748
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 688..749

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig110contigC-linearis_contig110:289861..295848 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig110.1459.1mRNA_C-linearis_contig110.1459.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig110 289861..295848 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig110.1459.1 ID=prot_C-linearis_contig110.1459.1|Name=mRNA_C-linearis_contig110.1459.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=755bp
RDAAGLSKETALLKAAVESLRAGLREKEDAVTELEREKEGLLEKVASLES
ATRVNVKLAQKVAHLEAQIQRLEAKLTQAGNERSLTMSLVDTLKSAQNDL
RAAHAQVSQRYTELENTAEDSAEAIRRGNVLLHSQQLKIDAQSRQVKRQE
EDLVSLRQERELHLEKSDETAAELAQILRRERAVQGSITDAQAEVEELKG
ELGHMREAFGRHRNVLRKNQGVIDAHETALKDVSRSELLSLSLEAERQSA
RHLQASTQAASEMARVTAEKNSAVHESGALRIEIEDVKDNLEEAGRKLDE
VQAKQSATAAMATAAGSRSTAKYRGRHINTLQQQQHHTSPEAHRDSLSQI
AVSDRQPHPVAHPDRPESLFINPNNTNSNQREWGNNATLQQRSISPHDGS
QGGTGVATSADQRRGNDLNQSRGDHSALQRPHHQVPTAATPGESPSSSIF
RPSTGDFLPPTGAGAPKDNPPHLSNSVGANDKPPLRSPNAAGFARQEPPA
SPTTSAADAGGGGGGGGFGGTTRDFGSQRNAHVVAVPPEDRGPEESEAKT
NGEGDGDRGAAKRTSSARRSRSRSPLANASINGEEGADDGNETAVMTTRL
LSPSSVGSRKRAKTTAANVDAGDDGSRAGDAIGDGDGAASPADGAGRGRD
AAGYSRPPRLSSTGTARREPSFSIGIGNSRKDTIRHGDNGAPDDTDGLSD
GVCASCGDIPYGLMINCSGCYRQHHSSCVPEGQRVGKGLGAVFHCSKCSN
NREG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR019786Zinc_finger_PHD-type_CS
IPR011011Znf_FYVE_PHD