prot_C-linearis_contig11.1369.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig11.1369.1
Unique Nameprot_C-linearis_contig11.1369.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length418
Homology
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BLAST of mRNA_C-linearis_contig11.1369.1 vs. uniprot
Match: D8LKJ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKJ3_ECTSI)

HSP 1 Score: 396 bits (1017), Expect = 1.880e-132
Identity = 252/406 (62.07%), Postives = 284/406 (69.95%), Query Frame = 0 
Query:    1 MSWAT-RPSSGGXXXXXXXXXXXXXXXXXAVTACEQRRP--KTSVQRKAHQMVEGLKEPPTPPRDIPSTADVDSLEQALVVSIRTAGLKPGRENQLVDEAARLRRRRKAWLEETEIVLREWVGHANLLWELHKQESAKFNESRRAREKLHARSLANLKKEHENERERVYAAVSEERDASVAQLRAAQEAQELWAKTQQEKAXXXXXRENNRTTARLRRDAEQHARSVKEVFEAEYADRMAAALERSEEAAALSSTAHKKAARXEATARRLEAQLVEAAERNRRMERLFQTQNGAVKELKEGLENRARRLARHLDEEQASNDKDRETHASELRAVKQQWKGELRTVDGRVRAIVGVKDQATQQAIERLTEGLEDARQRAETAEALLEELQRGVCPTLASTAVSHRHS 403
            MSWAT RPSS G                        +R   + SV+R+A  +V GL+EPP+PPRDIP T DVD+LEQALVVSIRTAGLKPGRENQLVDEA RLRRRRKAWLEE EIV REWVGHANLLWELHKQE +K ++S+R RE+ HARSLANLK+  E ERER  AAV              QEAQELWAK  ++++     RE  RTTARLRRD+EQHA SVKE  EA YADRMAAALE+SEE+AAL STA KKA R EAT RRLEAQL EAAERNRRME L QTQN AVKELKE LE RARRLAR L+E++AS++K+RE HASEL  VK Q                         AIERLT+GL+ +RQRAETAEALLEELQRG+CP     + SHRHS
Sbjct:    1 MSWATSRPSSAGGFGPAPRNRVRSSSGGPPAQGTRSKRTSARASVERRATAVVNGLREPPSPPRDIPPTNDVDALEQALVVSIRTAGLKPGRENQLVDEATRLRRRRKAWLEEAEIVFREWVGHANLLWELHKQEVSKLSDSQRERERQHARSLANLKERLEEERERTRAAVVXXXXXXXXXXXXXQEAQELWAKAHRDESAAAAKREIARTTARLRRDSEQHASSVKETLEAAYADRMAAALEKSEESAALLSTAQKKAFRLEATTRRLEAQLAEAAERNRRMEHLSQTQNAAVKELKEDLEKRARRLARRLEEDKASHEKEREAHASELLTVKAQ-------------------------AIERLTDGLKSSRQRAETAEALLEELQRGICPPFVPGSGSHRHS 381
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1369.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKJ3_ECTSI1.880e-13262.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 296..316
NoneNo IPR availableCOILSCoilCoilcoord: 90..110
NoneNo IPR availableCOILSCoilCoilcoord: 361..388
NoneNo IPR availableCOILSCoilCoilcoord: 192..212
NoneNo IPR availableCOILSCoilCoilcoord: 250..284
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..33
score: 5.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:3189917..3194586 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1369.1mRNA_C-linearis_contig11.1369.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig11 3189463..3194586 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig11.1369.1 ID=prot_C-linearis_contig11.1369.1|Name=mRNA_C-linearis_contig11.1369.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=418bp
MSWATRPSSGGGVVPASRRKARSSGGPPAVTACEQRRPKTSVQRKAHQMV
EGLKEPPTPPRDIPSTADVDSLEQALVVSIRTAGLKPGRENQLVDEAARL
RRRRKAWLEETEIVLREWVGHANLLWELHKQESAKFNESRRAREKLHARS
LANLKKEHENERERVYAAVSEERDASVAQLRAAQEAQELWAKTQQEKAAA
AAQRENNRTTARLRRDAEQHARSVKEVFEAEYADRMAAALERSEEAAALS
STAHKKAARLEATARRLEAQLVEAAERNRRMERLFQTQNGAVKELKEGLE
NRARRLARHLDEEQASNDKDRETHASELRAVKQQWKGELRTVDGRVRAIV
GVKDQATQQAIERLTEGLEDARQRAETAEALLEELQRGVCPTLASTAVSH
RHSSPRRQSSSTGRSRR*
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